TCONS_00003245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003245
Unique NameTCONS_00003245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003245 ID=TCONS_00003245|Name=TCONS_00003245|organism=Clytia hemisphaerica|type=transcript|length=557bp
AGCGTGTTAGCGTCTTTTTGAGAGATACGATCTTGTGGTGGTGACATGAT
GTCATAGATTTGTCAAAATGTCAATCGTGATAAATTTTCTCGTAAAAGAA
AGTTGAACTGAATTGATGTTCGTCGAGATACAAATTCAGTTTACTACGTT
TTATTCTAGTGTTTGCTGAGTGAAGGATATTAATGAGATATTATGATTGT
GTGTTAATTAGTCGATAATGGTTGGTCGTTATTAAACAAATTATGACTAT
TTGGTTTTCTGAGAATGTGATGGAACACAATTAAAACTATAATACAAAAA
TTACGTATTGCATGAGTTCTGTTTTCACTTACGAAAACTGGCGATGTAGA
cagttattctttttttttcaatcgggAGATGGAACGGCTCAATACCTTTC
ACAAATTCAATATTGTCCAACCATTGAGTACGGATCCGGGGGGATATTAG
GTTTGCGAGAGGACAGGTATctctgaaatttgaaaatcgaccttttgaga
gactgaatttcgaaaactttgttcgttttttgacgtttttaccaccctta
gagagag
Run BLAST on NCBI

transcript from alignment at sc0000025:883908..884464

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003245 ID=TCONS_00003245|Name=TCONS_00003245|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000025:883908..884464 (Clytia hemisphaerica)
ctctctctaagggtggtaaaaacgtcaaaaaacgaacaaagttttcgaaa
ttcagtctctcaaaaggtcgattttcaaatttcagagATACCTGTCCTCT
CGCAAACCTAATATCCCCCCGGATCCGTACTCAATGGTTGGACAATATTG
AATTTGTGAAAGGTATTGAGCCGTTCCATCTcccgattgaaaaaaaaaga
ataactgTCTACATCGCCAGTTTTCGTAAGTGAAAACAGAACTCATGCAA
TACGTAATTTTTGTATTATAGTTTTAATTGTGTTCCATCACATTCTCAGA
AAACCAAATAGTCATAATTTGTTTAATAACGACCAACCATTATCGACTAA
TTAACACACAATCATAATATCTCATTAATATCCTTCACTCAGCAAACACT
AGAATAAAACGTAGTAAACTGAATTTGTATCTCGACGAACATCAATTCAG
TTCAACTTTCTTTTACGAGAAAATTTATCACGATTGACATTTTGACAAAT
CTATGACATCATGTCACCACCACAAGATCGTATCTCTCAAAAAGACGCTA
ACACGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001805XLOC_001805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003245-exon-sc0000025-1491911889:883908..884464TCONS_00003245-exon-sc0000025-1491911889:883908..884464Clytia hemisphaericaexon
TCONS_00003245-exon-sc0000025-1510915933:883908..884464TCONS_00003245-exon-sc0000025-1510915933:883908..884464Clytia hemisphaericaexon
TCONS_00003245-exon-sc0000025-1575043694:883908..884464TCONS_00003245-exon-sc0000025-1575043694:883908..884464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:883908..884464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.11543	0	0.824892	0.21728	0.13107	0.245412	0	0	0	0	0.474615	0.774545	0.578892	0.993983	4.74496	3.76524	0.86698	0.56702	0.788549	1.29812	0.467564	0.318813	0	0.195375	0.279581	0.298376	12.4469	14.1802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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