TCONS_00003237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003237
Unique NameTCONS_00003237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003237 ID=TCONS_00003237|Name=TCONS_00003237|organism=Clytia hemisphaerica|type=transcript|length=561bp
CTTCAACGCtgacatctgaaaattcaaCACCTATATCTGCTACATCCACA
TCTGAGAAAGCAACAACCACTTCTTCAACGCtgacatctgaaaattcaaC
ACCTATATCTGCTACATCCACATCTGAGAAAGCAACAACCACTTCTTCAA
CGCtgacatctgaaaattcaaCACCTTTATCTGCTACATCCACACCTGAG
AAAGCAACAACCACTTCTTCAACGCtgacatctgaaaattcaaCACCTTT
ATCTGCTACATCCACATCTAAGAAAGCAACAACCACTTCTTCAACGCtga
catctgaaaattcaaCACCCACATCTGCTACATCCACATCTAAAAAAGCA
ACAACCACTTCTTCAACGCtgacatctgaaaattcaaCACCCACATCTGC
TACATCCACATCTAAGAAAGCAACAACCACTTCTTCAACGCtgacatctg
aaaattcaaCACCCACATCTGCTACATCCACATCTGAGAAAGCAACAACC
ACTTCTTCAACGCtgacatctgaaaattcaaCACCTATATCTGCTACATC
CACATCTAAGA
Run BLAST on NCBI

protein sequence of TCONS_00003237-protein

>TCONS_00003237-protein ID=TCONS_00003237-protein|Name=TCONS_00003237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
LDVDVADIGVEFSDVSVEEVVVAFSDVDVADVGVEFSDVSVEEVVVAFLD
VDVADVGVEFSDVSVEEVVVAFLDVDVADVGVEFSDVSVEEVVVAFLDVD
VADKGVEFSDVSVEEVVVAFSGVDVADKGVEFSDVSVEEVVVAFSDVDVA
DIGVEFSDVSVEEVVVAFSDVDVADIGVEFSDVSVE
Run BLAST on NCBI

transcript from alignment at sc0000025:679795..680355

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003237 ID=TCONS_00003237|Name=TCONS_00003237|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at sc0000025:679795..680355 (Clytia hemisphaerica)
TCTTAGATGTGGATGTAGCAGATATAGGTGttgaattttcagatgtcaGC
GTTGAAGAAGTGGTTGTTGCTTTCTCAGATGTGGATGTAGCAGATGTGGG
TGttgaattttcagatgtcaGCGTTGAAGAAGTGGTTGTTGCTTTCTTAG
ATGTGGATGTAGCAGATGTGGGTGttgaattttcagatgtcaGCGTTGAA
GAAGTGGTTGTTGCTTTTTTAGATGTGGATGTAGCAGATGTGGGTGttga
attttcagatgtcaGCGTTGAAGAAGTGGTTGTTGCTTTCTTAGATGTGG
ATGTAGCAGATAAAGGTGttgaattttcagatgtcaGCGTTGAAGAAGTG
GTTGTTGCTTTCTCAGGTGTGGATGTAGCAGATAAAGGTGttgaattttc
agatgtcaGCGTTGAAGAAGTGGTTGTTGCTTTCTCAGATGTGGATGTAG
CAGATATAGGTGttgaattttcagatgtcaGCGTTGAAGAAGTGGTTGTT
GCTTTCTCAGATGTGGATGTAGCAGATATAGGTGttgaattttcagatgt
caGCGTTGAAG

Coding sequence (CDS) from alignment at sc0000025:679795..680355

>TCONS_00003237 ID=TCONS_00003237|Name=TCONS_00003237|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000025:679795..680355 (Clytia hemisphaerica)
TTAGATGTGGATGTAGCAGATATAGGTGttgaattttcagatgtcaGCGT
TGAAGAAGTGGTTGTTGCTTTCTCAGATGTGGATGTAGCAGATGTGGGTG
ttgaattttcagatgtcaGCGTTGAAGAAGTGGTTGTTGCTTTCTTAGAT
GTGGATGTAGCAGATGTGGGTGttgaattttcagatgtcaGCGTTGAAGA
AGTGGTTGTTGCTTTTTTAGATGTGGATGTAGCAGATGTGGGTGttgaat
tttcagatgtcaGCGTTGAAGAAGTGGTTGTTGCTTTCTTAGATGTGGAT
GTAGCAGATAAAGGTGttgaattttcagatgtcaGCGTTGAAGAAGTGGT
TGTTGCTTTCTCAGGTGTGGATGTAGCAGATAAAGGTGttgaattttcag
atgtcaGCGTTGAAGAAGTGGTTGTTGCTTTCTCAGATGTGGATGTAGCA
GATATAGGTGttgaattttcagatgtcaGCGTTGAAGAAGTGGTTGTTGC
TTTCTCAGATGTGGATGTAGCAGATATAGGTGttgaattttcagatgtca
GCGTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001797XLOC_001797Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003237-proteinTCONS_00003237-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003237-exon-sc0000025-1491911889:679795..680355TCONS_00003237-exon-sc0000025-1491911889:679795..680355Clytia hemisphaericaexon
TCONS_00003237-exon-sc0000025-1510915933:679795..680355TCONS_00003237-exon-sc0000025-1510915933:679795..680355Clytia hemisphaericaexon
TCONS_00003237-exon-sc0000025-1575043694:679795..680355TCONS_00003237-exon-sc0000025-1575043694:679795..680355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:679795..680355 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.302367	0.0982852	0.79883	0.111647	0	0	0	0.485246	0	0	0	0	0.268127	0.069613	0.114463	0.061418	0	0.0775511	0.535705	0.672692	0	0.427788	0	0.105063	0.108213	0.482886	0.138202	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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