|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003213 ID=TCONS_00003213|Name=TCONS_00003213|organism=Clytia hemisphaerica|type=transcript|length=4607bpRun BLAST on NCBI transcript from alignment at sc0000025:899336..945679- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003213 ID=TCONS_00003213|Name=TCONS_00003213|organism=Clytia hemisphaerica|type=transcript|length=46344bp|location=Sequence derived from alignment at sc0000025:899336..945679- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003213 vs. Swiss-Prot (Human)
Match: SF3B3 (Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4) HSP 1 Score: 1885.54 bits (4883), Expect = 0.000e+0 Identity = 902/1224 (73.69%), Postives = 1062/1224 (86.76%), Query Frame = 2
Query: 59 MHLYQLTLQKSSAIYNAVHGNFSGTKTQDIVVSRGKVLELLRPDHNTGKVHPVFATEVFGVIRDMMAFRLTGGTKDYLAIGSDSGRIVILEYLPAKNCFEKVHQETFGKSGCRRIVPGQFLAADPKGRAIMISAMEKQKFVYILNRDAQARLTISSPLEAHKAHNIVYHCVGIDVGFENPMFACLEVDYEESDMDHTGEAAQTSQQTLTFYELDLGLNHVVRKYSEPLEEYANMLISVPGGNDGPSGVIICSENYLTYKNFGDQQDIRCPIPRRKNDLDDNERSMIFVCSATYKTKSMFFFLVQSEQGDIFKVTLETDDDMVTEIRIKYFDTIPVASAMCVLKTGFLFAASEFGNHALYQITHLGDDDEEPEFSSLMATELDEGETFFFHARDLQNLVCVDEMESLAPIMHCKVADLANEDTPQLYAACGRGPRSSLRVLRHGLEVSEMAVSELPGNPTSVWTVKRNVTDEQDSYIVVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALLQIYPDGIRHIRSDRRINEWKTPGKKSIIQCAVNERQIVIALSGNELVYFELDQSGQLNEYTERKEMSAEVVCMALGPVPASEQRSRFLAVGLGDNTVRIISLDPNDCLEPLSMQALPAPGESLCIIEMGGS-GATEHGEQATTGGLFLSIGLANGVLLRTVLDNVTGDLSDTRIRYLGSKPVKLFDVKTYGSHSVLAMSSRTWLSYTYQSRFHLTPLSYESLEYASSFASEQCPEGIVAISGNTLRILALEKLGAVFNQVTTPLRYTPRKFTIDHQTGSIIMIETDHNAMTSLFKSDRKQKIAEEMVEACGNDSEARAAESKVAASFLNTDMVEAQFGAPKAGVSKWASIIRVIDPIRGETHYEVELDQDEAAFSICVAEFASRPGERFLIVGCAFKMTLNPHTCLTASIHTYRIHQNDRGRVYLEFLHKTPVDDVPGALAGFQGRLLAGVGRILRIYDIGXXXXXXXXXXXXIATFITGIETTGYRIVANDIQESFHCLKYKKNDNQLVLFADDTHPRFLTCGCILDYDTVAGADKFGNVFFQRLPTDVKDDVEEDPTGVKALWDRGVLNGASQKMDTVSVYHIGETLLSLQKAVLIPGGSESLVYTTLSGGVGMLVPFTSREDIDFFQHLEMHMRQENPPLCGRDHLWYRSSYSPVKNTCDGDLCEQFNSLEYSKRKAIAEELDKTPAEVSKKLEDIRTRYAF 3727
M LY LTLQ+++ I A+HGNFSGTK Q+IVVSRGK+LELLRPD NTGKVH + EVFGVIR +MAFRLTGGTKDY+ +GSDSGRIVILEY P+KN FEK+HQETFGKSGCRRIVPGQFLA DPKGRA+MISA+EKQK VYILNRDA ARLTISSPLEAHKA+ +VYH VG+DVGFENPMFACLE+DYEE+D D TGEAA +QQTLTFYELDLGLNHVVRKYSEPLEE+ N LI+VPGG+DGPSGV+ICSENY+TYKNFGDQ DIRCPIPRR+NDLDD ER MIFVCSAT+KTKSMFFFL Q+EQGDIFK+TLETD+DMVTEIR+KYFDT+PVA+AMCVLKTGFLF ASEFGNH LYQI HLGDDDEEPEFSS M L+EG+TFFF R L+NLV VDE++SL+PI+ C++ADLANEDTPQLY ACGRGPRSSLRVLRHGLEVSEMAVSELPGNP +VWTV+R++ DE D+YI+VSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG+DAL+Q+YPDGIRHIR+D+R+NEWKTPGKK+I++CAVN+RQ+VIAL+G ELVYFE+D SGQLNEYTERKEMSA+VVCM+L VP EQRSRFLAVGL DNTVRIISLDP+DCL+PLSMQALPA ESLCI+EMGG+ E GE+ + G L+L+IGL NGVLLRTVLD VTGDLSDTR RYLGS+PVKLF V+ G +VLAMSSR+WLSY+YQSRFHLTPLSYE+LE+AS FASEQCPEGIVAIS NTLRILALEKLGAVFNQV PL+YTPRKF I ++ ++I+IETDHNA T K+ RKQ++AEEMVEA G D AAE +AA+FLN ++ E+ FGAPKAG +WAS+IRV++PI+G T V+L+Q+EAAFS+ V F++ + +++VG A + LNP + ++TY++ N LEFLHKTPV++VP A+A FQGR+L GVG++LR+YD+GKKKLLRKCENK IA +I+GI+T G+R++ +D+QESF ++YK+N+NQL++FADDT+PR++T +LDYDTVAGADKFGN+ RLP + D+V+EDPTG KALWDRG+LNGASQK + + YH+GET+LSLQK LIPGGSESLVYTTLSGG+G+LVPFTS ED DFFQH+EMH+R E+PPLCGRDHL +RS Y PVKN DGDLCEQFNS+E +K+K ++EELD+TP EVSKKLEDIRTRYAF
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMP--LEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAE--MAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEK---LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYAF 1217 The following BLAST results are available for this feature:
BLAST of TCONS_00003213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.