TCONS_00003207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003207
Unique NameTCONS_00003207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003207 ID=TCONS_00003207|Name=TCONS_00003207|organism=Clytia hemisphaerica|type=transcript|length=1459bp
CTTTGTGAATTTTATTCCATGGTGTATATATCATGCGATAAACTAACTAA
AGAAAGATAATTAAAACACATGCTTATGagctaaaacaaaaagtacataA
CCAAGCTACACTATAAattaagacatttttttaaaactaaaaacttgcac
gattaaaattaaaacctgttaaatttgttttttaaaaccCTAATAGAAAA
TATTATCCATCGAACTCTAAAAAGAAGACTAGAATGGcttatatttttcg
aaatcaTACGATTTGGCCATTCTAGTCACTTTAGAGTTCGGTTGGTTAAG
TGTGACCCAAATGGTTCTTATCTCCTATGAGAAATGCATTAAATACGTAA
AAATGTATAACAACTATATATCtaattttgtacaaatttttggattttct
aTTACCATTAATataacaatattacatatttttcaaaaagggttAAATAC
TGAATCATagagtttttttttggaatgaaAAAGTGGTTTTTATCTGTCCA
AAAAAATGTTGATTATGTAGAAAGCCATATATGACGATTCAACAGAATTA
AAGTGTAGAAataatcttcaaaatagatCTTCAGAATTCTTATTATCCTC
ATTAATTGAAATCATGCGAAACTTCTTCCTTCCCTTGACTGATGTTGTGC
CACCCAAACAAAATCGAAACCAAAAATGTGTAACAATTGCCATAAGTGCA
TTGGACCTCCATTAAAACGAAGGCTTTTAAAACAATATTAATTTTATCAG
AGTAGGCAAGTAACCTTTACTCTTGAAATGGTAGGTACACcttagattta
taaagcccgaagggctagatgtcgtgcttcgactgaaagtgtgccgtggt
taggtagaaAATTCTACCTATGTCTATGTCACGTgaaattacaatagaat
ttcagcacttgaccaatcagaagcttcgcgggttttccgAAAACAATTGC
AACAATACTTTTTCCGATagtcacttttttttgcctgcgatggcttaaag
cacgacatctagcccttcgggttcgGGCTTTCTAAATCTGTGAGGTACAC
TCAAACTATAACACCTCCcgataaaatttgaaacaaacgTCGTGTTACCA
TGTATTTACAATGCTCTTGTCTGAATGAGAAAACCTTCAGAGATTCGTAc
ccaaaaaaacgaaaaccAGTAGAATTAGTTCAATATCTAACTGGTGGCTA
GGAGACGTAAGCAAAAAGGTTGAATTGTTTTATATCGGTCACGCAAGAAA
CTTTAAATAAAAGAGATttataaaatgttttattaAAAGTTCCTTGGGTC
ACATGATCAAAGATGATCAATATCGATAGAAAATCTGAATTAGTTTAATT
GGGTGAATAACATTTCCATTCCAATGCAACAACTTCCCCGAtggggctat
tccagaaatagtctgtaccccctatgttcaggaggtgtgacgtcctgGGT
GGTCTGAAA
Run BLAST on NCBI

transcript from alignment at sc0000025:865925..868355-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003207 ID=TCONS_00003207|Name=TCONS_00003207|organism=Clytia hemisphaerica|type=transcript|length=2431bp|location=Sequence derived from alignment at sc0000025:865925..868355- (Clytia hemisphaerica)
CTTTGTGAATTTTATTCCATGGTGTATATATCATGCGATAAACTAACTAA
AGAAAGATAATTAAAACACATGCTTATGAGCTAAAACAAAAAGTACATAA
CCAAGCTACACTATAAATTAAGACATTTTTTTAAAACTAAAAACTTGCAC
GATTAAAATTAAAACCTGTTAAATTTGTTTTTTAAAACCCTAATAGAAAA
TATTATCCATCGAACTCTAAAAAGAAGACTAGAATGGCTTATATTTTTCG
AAATCAGTACGATTCTAGTCACTTTAGAGTTCGGTTGGTTAAGTGTGACC
CAAATGGTTCTTATCTCCTATGAGAAATGCATTAAATACGTAAAAATGTA
TAANAGTACGATTTGGCCATTCTAGTCACTTTAGAGTTCGGTTGGTTAAG
TGTGACCCAAATGGTTCTTATCTCCTATGAGAAATGCATTAAATACGTAA
AAATGTATAACAACTATATATCTAATTTTGTACAAATTTTTGGATTTTCT
ATTACCATTAATATAACAATATTACATATTTTTCAAAAAGGGTTAAATAC
TGAATCATAGAGTTTTTTTTTGGAATGAAAAAGTGGTTTTTATCTGTCCA
AAAAAATGTTGATTATGTAGAAAGCCATATATGACGATTCAACAGAATTA
AAGTGTAGAAATAATCTTCAAAATAGATCTTCAGAATTCTTATTATCCTC
ATTAATTGAAATCATGCGAAACTTCTTCCTTCCCTTGACTGATGTTGTGC
CACCCAAACAAAATCGAAACCAAAAATGTGTAACAATTGCCATAAGTGCA
TTGGACCTCCATTAAAACGAAGGCTTTTAAAACAATATTAATTTTATCAG
AGTAGGCAAGTAACCTTTACTCTTGAAATGGTAGGTACACCTTAGATTTA
TAAAGCCCGAAGGGCTAGATGTCGTGCTTCGACTGAAAGTGTGCCGTGGT
TAGGTAGAAAATTCTACCTATGTCTATGTCACGTGAAATTACAATAGAAT
TTCAGCACTTGACCAATCAGAAGCTTCGCGGGTTTTCCGAAAACAATTGC
AACAATACTTTTTCCGATAGTCACTTTTTTTTGCCTGCGATGGCTTAAAG
CACGACATCTAGCCCTTCGGGTTCGGGCTTTCTAAATCTGTGAGGTACAC
TTAAACTATAACACCCCCCGATAAAATTTGAAACAAACGTCGTGTTACCA
TGTATTTACAATGCTCTTGTCTGAATGAGAAAACCTTCAGAGATTCGTAC
CCAAAAAANCGGTCAAAAAAAAAGACAATTTTTTATTTTGCTACTGGCAG
TTTCATGCCACTTTTGTGACAATCTTCAGAGTAGCAACATAAAAAATTGT
CTTTTCTTCCTGACTGACATCGCTCTACTTATGTATCAAGCACTGTAAAA
GACTGAAGAATTATTTACCAATAATGAATCATAGAGTTTTTTTTTGGAAT
GAAAAAGTGGTTTTTATCTGTCCGAAAAAATGTTGATTATGTAGAGAGCC
ATTATATGACGATTCAACAGAATTAAAGTATAGAATTAATCTTCAAAATA
GATTCATTATCAGAATTCTTATTATCCTCATTAATTGAAATCATGCGAAA
CTTCTTCCTTCCCTTGACTGGTGTTGTGCCACCCAAACAAAATCGAAACC
AAAAATGTGTAACAATTGCCATAAGTGCATTGGACCTCTATTAAAACGAA
GGCTTTTAAAACAATATTAATTTTATCAAAGTAGGCAAGTAACATTTACT
CTTGAAATGGTAGGTACACCTTAGATTTATAAAGCCCGAAGGGTAGATGT
CGTGCTTCGACTGAAAGTGTGCCGTGGTTAGGTAGAAAATCCTACCTATG
TCATGTGAAATTACAATAGAATTTCAGCTCTTGACCAATCAGAAGCTTCG
CGGGTTTTCCGAAAACAATAGCAATAATACTTTTTCCGATAGTCACTTTT
TTTTGCTTGCGATGGCTTAAAGTACGACGTCTAGCCCTTCGGGTTCGGGC
TTTCTAAATCTGTGAGGTACACTCAAACTATAACACCTCCCGATAAAATT
TGAAACAAACGTCGTGTTACCATGTATTTACAATGCTCTTGTCTGAATGA
GAAAACCTTCAGAGATTCGTACCCAAAAAAACGAAAACCAGTAGAATTAG
TTCAATATCTAACTGGTGGCTAGGAGACGTAAGCAAAAAGGTTGAATTGT
TTTATATCGGTCACGCAAGAAACTTTAAATAAAAGAGATTTATAAAATGT
TTTATTAAAAGTTCCTTGGGTCACATGATCAAAGATGATCAATATCGATA
GAAAATCTGAATTAGTTTAATTGGGTGAATAACATTTCCATTCCAATGCA
ACAACTTCCCCGATGGGGCTATTCCAGAAATAGTCTGTACCCCCTATGTT
CAGGAGGTGTGACGTCCTGGGTGGTCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001770XLOC_001770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003207-exon-sc0000025-1575043694:868100..868355TCONS_00003207-exon-sc0000025-1575043694:868100..868355Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1575043694:867212..867999TCONS_00003207-exon-sc0000025-1575043694:867212..867999Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1575043694:865925..866339TCONS_00003207-exon-sc0000025-1575043694:865925..866339Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1510915933:868100..868355TCONS_00003207-exon-sc0000025-1510915933:868100..868355Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1510915933:867212..867999TCONS_00003207-exon-sc0000025-1510915933:867212..867999Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1510915933:865925..866339TCONS_00003207-exon-sc0000025-1510915933:865925..866339Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1491911889:868100..868355TCONS_00003207-exon-sc0000025-1491911889:868100..868355Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1491911889:867212..867999TCONS_00003207-exon-sc0000025-1491911889:867212..867999Clytia hemisphaericaexon
TCONS_00003207-exon-sc0000025-1491911889:865925..866339TCONS_00003207-exon-sc0000025-1491911889:865925..866339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:865925..868355 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.478486	0.450931	0.457596	1.33339	3.8574	2.98738	7.34051	6.37576	5.32382	3.08153	4.61165	5.60789	5.69418	6.28692	3.16443	3.79106	3.65436	4.48815	2.64062	3.94034	8.6605	8.17979	4.18898	5.07018	7.22124	8.05506	5.51716	3.42528	3.91513	4.29376
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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