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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003201 ID=TCONS_00003201|Name=TCONS_00003201|organism=Clytia hemisphaerica|type=transcript|length=4306bp
CAAGAGCCGGAGCTGTGATATGTTGTTTAACCCCAAAGAGTGCAACGAGA
GCCGGAAGCCGTGACGCTGTTCTAAGAGGagtaatcaaagaaaaaagata
aaaaaaaatagaaaccttAGCCTACTAAGGAGAGCCGGAGCTTCCTGTGT
GACGTTGCTGAAaggagtaaaagaaaaaagaacaaaagccTACAACAAGA
GCCGGAGCTGTGATATGTTGTTTAACCCCAAAGAGTGCAACGAGAGCCGG
AACCGTGACGCTGTTCTAAGAGgagtaaacaaagaaaaaagataaaaaaa
aagaaacctaGCCTATAACGAGAGCCTGAGCCTCCAGTGTGACGttgtta
aaaaaaagaaaccttAGCCTATGTGGAGAGCCGGAGCCTCCCGTGTGACG
TTGTTGAAAATAGAAACCTTAGCTTATAACGAGAGCAGAGCGATGAGAAA
CGAGgtacaaacaataaaaaaaaaggaaggaaaaaaaaagaaaacgaccc
aaaaaagaaaaacaataaaagaaaaacaaaacgaGCAACCTAACAAACAC
CTATTGATCGAACTCAAGATGCATCCCAAACGACCTAATCCCTGGACTAA
AAAACCTGTAGCGTGGAAAAACCAGGTAAAACCGNATCCCAAACGACCTA
GTCCCTGGACTAAAAAACCTGTAGCGTGGAAAAACCAGGTAAAACCGCTG
GGACTAGGATTGATCGAAATGACTGGCGCGCGCGTCCTCTTCCCGTCGTC
GGTGATGGTTGATCTGAAaatagaagagaaaaaaaaaacagcgaaaGGAA
ATAAGTACAAGTTAAAGGCACATAGGGATAAATAAGGGTGTCAGGTAGGG
TGGGAAGCAAAAGTATTTGTGTTTGAATGCATGAGAGGATGAGGTGAACT
GAATGACTGAACTCAAACGCTACAAGTCGGAGTCCGTGGGACTGGGACGA
GAAGGAGTGGGCGTGCAGTTTAAGCCCGCCATATGATGCCGGGCGTTAGA
CTTGCTGATTGCGGAATTAACATGAGCTAAAGTTTAGCTCTAATTAATTC
CTTATCAGTGTGACTGTTGAGTGATGAGTAGCTTAAACCTAGCCTAGTGG
AGAATCCAAAAATGCGTTTTGATGATAGTCGAAATACCCGAAAATAGTGA
TAAGATACCCTAAACATAAACAAGGGGAAACAATGAAAAGGAAACAAATG
TATAATTGTGAAATGAGATATCTTGACTATAAAATGAAACGTAAGAAAGT
GTTGGTTTTGGCGTGACATTTGGGGATGCATCGAGAGATGGATTTTCTTA
AAGCCTATAACCGCGGACGGTTGTGAAGACCGCAACGAGAGCCGGAGGCG
TGACGTGGGTCTGAGCCTGATCTGATCTGATGTAATAGAGCTAGATGGGT
TTACGTAGTAACCCGCACCCCCAAGTCCACCGCCAAACCCTAAGCGCAAG
CTAACAGAAGTAACTATCTTCTAAATCTATTATTTAGGTTGAAGGTGCAA
AGgccgaaaaaaagaaaaggaaggaAAAGACTCACTGAAATATTAATAAG
AGGGGAGACCGAACAACAAGTTAGTAGTTCCTTATTTTGGGTAAAAATGC
TTCATCCTATTAGTTACATTGCAAAAACAACGAAGTCTGGTTAAAATCAA
GAGGTTAACAAGAGGACTACCCAAGAACCACTTGGCCACTTAATCCATGC
CGTCCCGTCTGTTAAAGGGGTTTTAAATGGACTCAGGGGTAATACCAAAG
TTGCTAAGAAGGTGGTGCCTGCACCTATAGAAGCTCTGGGCCCTTGTAAT
GCTGCCGATAAAGCTGGAAATGAGAATCTTCCCTCGGGCACTGAAAAAAA
AAGGGGGTGATTGTAACAAGGGGTGAGATGCAGATAACTTGCATTAAGCA
CAGGTTGCCGGGTAGTCGAATGGGGGTTCGCTTGCAGGAGGGACAGTTTG
CAAAGATTAATCATGCAGACCATGACCATTGCCTCAAATAGGGAAATTTC
TGTTAGCTGGTAGGAGAATTATTGGAGAGGAGAATTTGTTCAAATCTGAA
ATGATTAGATTAAACGcgtattttgaaagaaaaaaaaaaaattactataa
GTAACAgaataaataagacaaaatagaAGGAACGAGcaaaatgaattaaa
aacattaaagaaGTTTGGGGAGAAAGCAACACGACTAAAACCCTCAAATT
TTAGCCTAACAGGCGGAAAACTAATTGTTACAGAATGACCAGTAGTTGTC
TGCGACCAGCTGCTACCCGCAGCACTGatgattgaaattgaatattgtCA
GTATAAACAAGTATGCGGCAATTcaacaaaagttgtataattgGCAAAAT
GCAGTGGAACACCATCAAAGACCTGACGAGAGTGACAGACCAGGAAGAAA
GGAATGTACGTATTTATTTGGACAGAGAGTAAAGAGGAAGTTCAGAAAGG
TGGAATTAGAGGTAAATCTAAAAGAAGAAGACATAAGATCAACTACAGAG
GAACCCTTGATTGGGGCAGCATGATGATTCAACTTGGGAGAGTCAAATAG
AATAAGGTAGCTGAAGCTGAGACTAAAAACAAGAGAAGGTCTAGTAAACA
CGTCACCAGAGCCGAGAACGTGTAGCAAGCAAAGGAAAGGTAAGAACAAA
AGTTAAGAGGGGAAGAAGAGTAGCCAAATGAGAGCCTTAGGAAAATTGAC
ACAAAACTGTTTTGTAGTGGATTATCTGTGAACGTTGACTCGAGGAAGCT
TTAAGAGCAGCGTGAACAGCAAAAGCTTTGAATACTGGATTGTGAGTAAG
ATCAGCTTAGTCAAAGGACCTACCGGAGATGGGCCAATTGACCTTTTGCA
AGACACCTAAACCTCGAGAGCATCAAAGGAAAGAGAAATTAAGTCATTAG
GCACTGAGAGATCTGAAAGAAATGGGTCATTGCTCTAAGAAGCAAGAAAT
CCAAACACGCTAAGTAAGGTCTAAGCCACTGTAAGATGGAATGATAGACA
TGGTGATTGGGTTTGAAGAGCTATCGCGGAAAGTAAATAGGCTTTGGAAA
TTTTGTCTGGTTAAAGAAAGGGCAGCACAGGAGCAAATCAACTCAATATA
AGAATAGCCAGAAATAAGATTTGAAGGCACAATGAGGAACCTATTAAACG
TGCAGAACAAAAGACACTGATTCCCAACTTGCGAATGCTGTCGGGAATAC
CAAAATAAGGACCTATCATTAGGTTAGACGCCAATCAGATGAGGTTGGAA
CATAAAATTAAAATAACACGTGAGATAACCCCCCAAAAGTATGAAAAACA
CTGACAGTGTCAGCGGAGAGATTTATAATAGTTCTAAGTAACCTTCGGCC
GTGGAACCAAGCAGGTTGACAAAGGCAGGAAGATAAACAAAAACCGCTGA
ATGGAGATACAGCTAAGTGGGTTGATATTTGAGGACCATATTACAAGGAC
GAATGTTAAATAAAACCAGCCCGATGTACGCCCTCTTAGAATGACATGCC
TAGTGTTATACTGTGCTTTGCGACGTGTAAAAGAAGGAGAAAGGACAAAT
AATCTAAAAATAATCAGGCATTTCGTTTTCTCAATATGATGGGGGAGACT
TGATTGGATTTATTAAAGAGATGTATGACACAACACACCACTGTCAGAGA
GGGGAGGATTCGGGGACCAACTTACAAGAGGGATACTTTAACTAAAACCA
GTCCAAATGTACGTTCTCCTAAATGACATGCCTTGTCTTATACCGTGCTA
AGTATACaaatgagaaaatcaaaactatCTGGTAATAATCAGACATTTTG
TTGGCTAAGTGTGGCGGAGACCTAATAGAGGTTCAGAAGAAAGGAGGGGA
GGGACATGTAATTCTCAAGGCCAAGTTGAAATTGGGGAGAGAATGCTGGA
ATCAGTGTCTTTATGGCAATTAGTTGATGTCCTCATCGAAAATTACGAAT
CTGGCGACGAATGGGCCTTCTCCAAGTGTGCAGGcagtaaaataataaaa
aacaacaggCTCACCCAGGCGGATTTGCTGGATAATCTTGGGTGGAGTTA
GATATAACTTTTGCAGTCGTTCAGGTCCAGACGTTATGATGAAAAGGAAT
ACCACAGTTAGAGATACCATTTTGGATCGTAATAATGCTGACTCAACAGG
CTGTCGAATAAGGTCGTAACTGGAACAACGGTGGTGTGGGACACGGTGGT
GGAGACATACTTTTGAGTGTTGGTGTGTGGGGTTCGATAGGAGAAACGCA
GAATTGATAATTGAAGATACAGTTGACGTCGTCGTGTTGGAAGTTGAAGA
TGCAAG Run BLAST on NCBI protein sequence of TCONS_00003201-protein >TCONS_00003201-protein ID=TCONS_00003201-protein|Name=TCONS_00003201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MWRAGASRVTLLKIETLAYNESRAMRNEVQTIKKKEGKKKKTTQKRKTIK
EKQNEQPNKHLLIELKMHPKRPNPWTKKPVAWKNQVKPXPKRPSPWTKKP
VAWKNQVKPLGLGLIEMTGARVLFPSSVMVDLKIEEKKKTAKGNKYKLKA
HRDK Run BLAST on NCBI transcript from alignment at sc0000025:683099..687598- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003201 ID=TCONS_00003201|Name=TCONS_00003201|organism=Clytia hemisphaerica|type=transcript|length=4500bp|location=Sequence derived from alignment at sc0000025:683099..687598- (Clytia hemisphaerica)
CAAGAGCCGGAGCTGTGATATGTTGTTTAACCCCAAAGAGTGCAACGAGA
GCCGGAAGCCGTGACGCTGTTCTAAGAGGAGTAATCAAAGAAAAAAGATA
AAAAAAAATAGAAACCTTAGCCTACTAAGGAGAGCCGGAGCTTCCTGTGT
GACGTTGCTGAAAGGAGTAAAAGAAAAAAGAACAAAAGCCTACAACAAGA
GCCGGAGCTGTGATATGTTGTTTAACCCCAAAGAGTGCAACGAGAGCCGG
AAGCCGTGACGCTGTTCTAAGAGGAGTAAACAAAGAAAAAAGATAAAAAA
AAAGAAACCTTAGCCTACTAAGGAGAGCCGGAGCTTCCTGTGTGACGTTG
CTGAAAGGAGTAAAGGAAAAAAGAACAAAAGCCTACAACAAGAGCCGGAG
CTGTGATATGTTGTTTAACCCCAAAGAGTGCAACGAGAGCCGGAAGCCGT
GACGCTGTTCTAAGAGGAGTAAACAAAGAAAAAAGATAAAAAAAAAGAAA
CCTAGCCTATAACGAGAGCCTGAGCCTCCAGTGTGACGTTGTTAAAAAAA
AGAAACCTTAGCCTATGTGGAGAGCCGGAGCCTCCCGTGTGACGTTGTTG
AAAATAGAAACCTTAGCTTATAACGAGAGCAGAGCGATGAGAAACGAGGT
ACAAACAATAAAAAAAAAGGAAGGAAAAAAAAAGAAAACGACCCAAAAAA
GAAAAACAATAAAAGAAAAACAAAACGAGCAACCTAACAAACACCTATTG
ATCGAACTCAAGATGCATCCCAAACGACCTAATCCCTGGACTAAAAAACC
TGTAGCGTGGAAAAACCAGGTAAAACCGNATCCCAAACGACCTAGTCCCT
GGACTAAAAAACCTGTAGCGTGGAAAAACCAGGTAAAACCGCTGGGACTA
GGATTGATCGAAATGACTGGCGCGCGCGTCCTCTTCCCGTCGTCGGTGAT
GGTTGATCTGAAAATAGAAGAGAAAAAAAAAACAGCGAAAGGAAATAAGT
ACAAGTTAAAGGCACATAGGGATAAATAAGGGTGTCAGGTAGGGTGGGAA
GCAAAAGTATTTGTGTTTGAATGCATGAGAGGATGAGGTGAACTGAATGA
CTGAACTCAAACGCTACAAGTCGGAGTCCGTGGGACTGGGACGAGAAGGA
GTGGGCGTGCAGTTTAAGCCCGCCATATGATGCCGGGCGTTAGACTTGCT
GATTGCGGAATTAACATGAGCTAAAGTTTAGCTCTAATTAATTCCTTATC
AGTGTGACTGTTGAGTGATGAGTAGCTTAAACCTAGCCTAGTGGAGAATC
CAAAAATGCGTTTTGATGATAGTCGAAATACCCGAAAATAGTGATAAGAT
ACCCTAAACATAAACAAGGGGAAACAATGAAAAGGAAACAAATGTATAAT
TGTGAAATGAGATATCTTGACTATAAAATGAAACGTAAGAAAGTGTTGGT
TTTGGCGTGACATTTGGGGATGCATCGAGAGATGGATTTTCTTAAAGCCT
ATAACCGCGGACGGTTGTGAAGACCGCAACGAGAGCCGGAGGCGTGACGT
GGGTCTGAGCCTGATCTGATCTGATGTAATAGAGCTAGATGGGTTTACGT
AGTAACCCGCACCCCCAAGTCCACCGCCAAACCCTAAGCGCAAGCTAACA
GAAGTAACTATCTTCTAAATCTATTATTTAGGTTGAAGGTGCAAAGGCCG
AAAAAAAGAAAAGGAAGGAAAAGACTCACTGAAATATTAATAAGAGGGGA
GACCGAACAACAAGTTAGTAGTTCCTTATTTTGGGTAAAAATGCTTCATC
CTATTAGTTACATTGCAAAAACAACGAAGTCTGGTTAAAATCAAGAGGTT
AACAAGAGGACTACCCAAGAACCACTTGGCCACTTAATCCATGCCGTCCC
GTCTGTTAAAGGGGTTTTAAATGGACTCAGGGGTAATACCAAAGTTGCTA
AGAAGGTGGTGCCTGCACCTATAGAAGCTCTGGGCCCTTGTAATGCTGCC
GATAAAGCTGGAAATGAGAATCTTCCCTCGGGCACTGAAAAAAAAAGGGG
GTGATTGTAACAAGGGGTGAGATGCAGATAACTTGCATTAAGCACAGGTT
GCCGGGTAGTCGAATGGGGGTTCGCTTGCAGGAGGGACAGTTTGCAAAGA
TTAATCATGCAGACCATGACCATTGCCTCAAATAGGGAAATTTCTGTTAG
CTGGTAGGAGAATTATTGGAGAGGAGAATTTGTTCAAATCTGAAATGATT
AGATTAAACGCGTATTTTGAAAGAAAAAAAAAAAATTACTATAAGTAACA
GAATAAATAAGACAAAATAGAAGGAACGAGCAAAATGAATTAAAAACATT
AAAGAAGTTTGGGGAGAAAGCAACACGACTAAAACCCTCAAATTTTAGCC
TAACAGGCGGAAAACTAATTGTTACAGAATGACCAGTAGTTGTCTGCGAC
CAGCTGCTACCCGCAGCACTGATGATTGAAATTGAATATTGTCAGTATAA
ACAAGTATGCGGCAATTCAACAAAAGTTGTATAATTGGCAAAATGCAGTG
GAACACCATCAAAGACCTGACGAGAGTGACAGACCAGGAAGAAAGGAATG
TACGTATTTATTTGGACAGAGAGTAAAGAGGAAGTTCAGAAAGGTGGAAT
TAGAGGTAAATCTAAAAGAAGAAGACATAAGATCAACTACAGAGGAACCC
TTGATTGGGGCAGCATGATGATTCAACTTGGGAGAGTCAAATAGAATAAG
GTAGCTGAAGCTGAGACTAAAAACAAGAGAAGGTCTAGTAAACACGTCAC
CAGAGCCGAGAACGTGTAGCAAGCAAAGGAAAGGTAAGAACAAAAGTTAA
GAGGGGAAGAAGAGTAGCCAAATGAGAGCCTTAGGAAAATTGACACAAAA
CTGTTTTGTAGTGGATTATCTGTGAACGTTGACTCGAGGAAGCTTTAAGA
GCAGCGTGAACAGCAAAAGCTTTGAATACTGGATTGTGAGTAAGATCAGC
TTAGTCAAAGGACCTACCGGAGATGGGCCAATTGACCTTTTGCAAGACAC
CTAAACCTCGAGAGCATCAAAGGAAAGAGAAATTAAGTCATTAGGCACTG
AGAGATCTGAAAGAAATGGGTCATTGCTCTAAGAAGCAAGAAATCCAAAC
ACGCTAAGTAAGGTCTAAGCCACTGTAAGATGGAATGATAGACATGGTGA
TTGGGTTTGAAGAGCTATCGCGGAAAGTAAATAGGCTTTGGAAATTTTGT
CTGGTTAAAGAAAGGGCAGCACAGGAGCAAATCAACTCAATATAAGAATA
GCCAGAAATAAGATTTGAAGGCACAATGAGGAACCTATTAAACGTGCAGA
ACAAAAGACACTGATTCCCAACTTGCGAATGCTGTCGGGAATACCAAAAT
AAGGACCTATCATTAGGTTAGACGCCAATCAGATGAGGTTGGAACATAAA
ATTAAAATAACACGTGAGATAACCCCCCAAAAGTATGAAAAACACTGACA
GTGTCAGCGGAGAGATTTATAATAGTTCTAAGTAACCTTCGGCCGTGGAA
CCAAGCAGGTTGACAAAGGCAGGAAGATAAACAAAAACCGCTGAATGGAG
ATACAGCTAAGTGGGTTGATATTTGAGGACCATATTACAAGGACGAATGT
TAAATAAAACCAGCCCGATGTACGCCCTCTTAGAATGACATGCCTAGTGT
TATACTGTGCTTTGCGACGTGTAAAAGAAGGAGAAAGGACAAATAATCTA
AAAATAATCAGGCATTTCGTTTTCTCAATATGATGGGGGAGACTTGATTG
GATTTATTAAAGAGATGTATGACACAACACACCACTGTCAGAGAGGGGAG
GATTCGGGGACCAACTTACAAGAGGGATACTTTAACTAAAACCAGTCCAA
ATGTACGTTCTCCTAAATGACATGCCTTGTCTTATACCGTGCTAAGTATA
CAAATGAGAAAATCAAAACTATCTGGTAATAATCAGACATTTTGTTGGCT
AAGTGTGGCGGAGACCTAATAGAGGTTCAGAAGAAAGGAGGGGAGGGACA
TGTAATTCTCAAGGCCAAGTTGAAATTGGGGAGAGAATGCTGGAATCAGT
GTCTTTATGGCAATTAGTTGATGTCCTCATCGAAAATTACGAATCTGGCG
ACGAATGGGCCTTCTCCAAGTGTGCAGGCAGTAAAATAATAAAAAACAAC
AGGCTCACCCAGGCGGATTTGCTGGATAATCTTGGGTGGAGTTAGATATA
ACTTTTGCAGTCGTTCAGGTCCAGACGTTATGATGAAAAGGAATACCACA
GTTAGAGATACCATTTTGGATCGTAATAATGCTGACTCAACAGGCTGTCG
AATAAGGTCGTAACTGGAACAACGGTGGTGTGGGACACGGTGGTGGAGAC
ATACTTTTGAGTGTTGGTGTGTGGGGTTCGATAGGAGAAACGCAGAATTG
ATAATTGAAGATACAGTTGACGTCGTCGTGTTGGAAGTTGAAGATGCAAG
Coding sequence (CDS) from alignment at sc0000025:683099..687598- >TCONS_00003201 ID=TCONS_00003201|Name=TCONS_00003201|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000025:683099..687598- (Clytia hemisphaerica)
ATGTGGAGAGCCGGAGCCTCCCGTGTGACGTTGTTGAAAATAGAAACCTT
AGCTTATAACGAGAGCAGAGCGATGAGAAACGAGGTACAAACAATAAAAA
AAAAGGAAGGAAAAAAAAAGAAAACGACCCAAAAAAGAAAAACAATAAAA
GAAAAACAAAACGAGCAACCTAACAAACACCTATTGATCGAACTCAAGAT
GCATCCCAAACGACCTAATCCCTGGACTAAAAAACCTGTAGCGTGGAAAA
ACCAGGTAAAACCGNATCCCAAACGACCTAGTCCCTGGACTAAAAAACCT
GTAGCGTGGAAAAACCAGGTAAAACCGCTGGGACTAGGATTGATCGAAAT
GACTGGCGCGCGCGTCCTCTTCCCGTCGTCGGTGATGGTTGATCTGAAAA
TAGAAGAGAAAAAAAAAACAGCGAAAGGAAATAAGTACAAGTTAAAGGCA
CATAGGGATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003201-exon-sc0000025-1575043694:687347..687598 | TCONS_00003201-exon-sc0000025-1575043694:687347..687598 | Clytia hemisphaerica | exon |
| TCONS_00003201-exon-sc0000025-1575043694:683099..687152 | TCONS_00003201-exon-sc0000025-1575043694:683099..687152 | Clytia hemisphaerica | exon |
| TCONS_00003201-exon-sc0000025-1510915933:687347..687598 | TCONS_00003201-exon-sc0000025-1510915933:687347..687598 | Clytia hemisphaerica | exon |
| TCONS_00003201-exon-sc0000025-1510915933:683099..687152 | TCONS_00003201-exon-sc0000025-1510915933:683099..687152 | Clytia hemisphaerica | exon |
| TCONS_00003201-exon-sc0000025-1491911889:687347..687598 | TCONS_00003201-exon-sc0000025-1491911889:687347..687598 | Clytia hemisphaerica | exon |
| TCONS_00003201-exon-sc0000025-1491911889:683099..687152 | TCONS_00003201-exon-sc0000025-1491911889:683099..687152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:683099..687598 - |
Blast
The following BLAST results are available for this feature:
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