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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003200 ID=TCONS_00003200|Name=TCONS_00003200|organism=Clytia hemisphaerica|type=transcript|length=4070bp
GCAACGAGAGCCGGAACCGTGACGCTGTTCTAAGAGgagtaaacaaagaa
aaaagataaaaaaaaagaaacctaGCCTATAACGAGAGCCTGAGCCTCCA
GTGTGACGttgttaaaaaaaagaaaccttAGCCTATGTGGAGAGCCGGAG
CCTCCCGTGTGACGTTGTTGAAAATAGAAACCTTAGCTTATAACGAGAGC
AGAGCGATGAGAAACGAGgtacaaacaataaaaaaaaaggaaggaaaaaa
aaagaaaacgacccaaaaaagaaaaacaataaaagaaaaacaaaacgaGC
AACCTAACAAACACCTATTGATCGAACTCAAGATGCATCCCAAACGACCT
AATCCCTGGACTAAAAAACCTGTAGCGTGGAAAAACCAGGTAAAACCGNA
TCCCAAACGACCTAGTCCCTGGACTAAAAAACCTGTAGCGTGGAAAAACC
AGGTAAAACCGCTGGGACTAGGATTGATCGAAATGACTGGCGCGCGCGTC
CTCTTCCCGTCGTCGGTGATGGTTGATCTGAAaatagaagagaaaaaaaa
aacagcgaaaGGAAATAAGTACAAGTTAAAGGCACATAGGGATAAATAAG
GGTGTCAGGTAGGGTGGGAAGCAAAAGTATTTGTGTTTGAATGCATGAGA
GGATGAGGTGAACTGAATGACTGAACTCAAACGCTACAAGTCGGAGTCCG
TGGGACTGGGACGAGAAGGAGTGGGCGTGCAGTTTAAGCCCGCCATATGA
TGCCGGGCGTTAGACTTGCTGATTGCGGAATTAACATGAGCTAAAGTTTA
GCTCTAATTAATTCCTTATCAGTGTGACTGTTGAGTGATGAGTAGCTTAA
ACCTAGCCTAGTGGAGAATCCAAAAATGCGTTTTGATGATAGTCGAAATA
CCCGAAAATAGTGATAAGATACCCTAAACATAAACAAGGGGAAACAATGA
AAAGGAAACAAATGTATAATTGTGAAATGAGATATCTTGACTATAAAATG
AAACGTAAGAAAGTGTTGGTTTTGGCGTGACATTTGGGGATGCATCGAGA
GATGGATTTTCTTAAAGCCTATAACCGCGGACGGTTGTGAAGACCGCAAC
GAGAGCCGGAGGCGTGACGTGGGTCTGAGCCTGATCTGATCTGATGTAAT
AGAGCTAGATGGGTTTACGTAGTAACCCGCACCCCCAAGTCCACCGCCAA
ACCCTAAGCGCAAGCTAACAGAAGTAACTATCTTCTAAATCTATTATTTA
GGTTGAAGGTGCAAAGgccgaaaaaaagaaaaggaaggaAAAGACTCACT
GAAATATTAATAAGAGGGGAGACCGAACAACAAGTTAGTAGTTCCTTATT
TTGGGTAAAAATGCTTCATCCTATTAGTTACATTGCAAAAACAACGAAGT
CTGGTTAAAATCAAGAGGTTAACAAGAGGACTACCCAAGAACCACTTGGC
CACTTAATCCATGCCGTCCCGTCTGTTAAAGGGGTTTTAAATGGACTCAG
GGGTAATACCAAAGTTGCTAAGAAGGTGGTGCCTGCACCTATAGAAGCTC
TGGGCCCTTGTAATGCTGCCGATAAAGCTGGAAATGAGAATCTTCCCTCG
GGCACTGAAAAAAAAAGGGGGTGATTGTAACAAGGGGTGAGATGCAGATA
ACTTGCATTAAGCACAGGTTGCCGGGTAGTCGAATGGGGGTTCGCTTGCA
GGAGGGACAGTTTGCAAAGATTAATCATGCAGACCATGACCATTGCCTCA
AATAGGGAAATTTCTGTTAGCTGGTAGGAGAATTATTGGAGAGGAGAATT
TGTTCAAATCTGAAATGATTAGATTAAACGcgtattttgaaagaaaaaaa
aaaaattactataaGTAACAgaataaataagacaaaatagaAGGAACGAG
caaaatgaattaaaaacattaaagaaGTTTGGGGAGAAAGCAACACGACT
AAAACCCTCAAATTTTAGCCTAACAGGCGGAAAACTAATTGTTACAGAAT
GACCAGTAGTTGTCTGCGACCAGCTGCTACCCGCAGCACTGatgattgaa
attgaatattgtCAGTATAAACAAGTATGCGGCAATTcaacaaaagttgt
ataattgGCAAAATGCAGTGGAACACCATCAAAGACCTGACGAGAGTGAC
AGACCAGGAAGAAAGGAATGTACGTATTTATTTGGACAGAGAGTAAAGAG
GAAGTTCAGAAAGGTGGAATTAGAGGTAAATCTAAAAGAAGAAGACATAA
GATCAACTACAGAGGAACCCTTGATTGGGGCAGCATGATGATTCAACTTG
GGAGAGTCAAATAGAATAAGGTAGCTGAAGCTGAGACTAAAAACAAGAGA
AGGTCTAGTAAACACGTCACCAGAGCCGAGAACGTGTAGCAAGCAAAGGA
AAGGTAAGAACAAAAGTTAAGAGGGGAAGAAGAGTAGCCAAATGAGAGCC
TTAGGAAAATTGACACAAAACTGTTTTGTAGTGGATTATCTGTGAACGTT
GACTCGAGGAAGCTTTAAGAGCAGCGTGAACAGCAAAAGCTTTGAATACT
GGATTGTGAGTAAGATCAGCTTAGTCAAAGGACCTACCGGAGATGGGCCA
ATTGACCTTTTGCAAGACACCTAAACCTCGAGAGCATCAAAGGAAAGAGA
AATTAAGTCATTAGGCACTGAGAGATCTGAAAGAAATGGGTCATTGCTCT
AAGAAGCAAGAAATCCAAACACGCTAAGTAAGGTCTAAGCCACTGTAAGA
TGGAATGATAGACATGGTGATTGGGTTTGAAGAGCTATCGCGGAAAGTAA
ATAGGCTTTGGAAATTTTGTCTGGTTAAAGAAAGGGCAGCACAGGAGCAA
ATCAACTCAATATAAGAATAGCCAGAAATAAGATTTGAAGGCACAATGAG
GAACCTATTAAACGTGCAGAACAAAAGACACTGATTCCCAACTTGCGAAT
GCTGTCGGGAATACCAAAATAAGGACCTATCATTAGGTTAGACGCCAATC
AGATGAGGTTGGAACATAAAATTAAAATAACACGTGAGATAACCCCCCAA
AAGTATGAAAAACACTGACAGTGTCAGCGGAGAGATTTATAATAGTTCTA
AGTAACCTTCGGCCGTGGAACCAAGCAGGTTGACAAAGGCAGGAAGATAA
ACAAAAACCGCTGAATGGAGATACAGCTAAGTGGGTTGATATTTGAGGAC
CATATTACAAGGACGAATGTTAAATAAAACCAGCCCGATGTACGCCCTCT
TAGAATGACATGCCTAGTGTTATACTGTGCTTTGCGACGTGTAAAAGAAG
GAGAAAGGACAAATAATCTAAAAATAATCAGGCATTTCGTTTTCTCAATA
TGATGGGGGAGACTTGATTGGATTTATTAAAGAGATGTATGACACAACAC
ACCACTGTCAGAGAGGGGAGGATTCGGGGACCAACTTACAAGAGGGATAC
TTTAACTAAAACCAGTCCAAATGTACGTTCTCCTAAATGACATGCCTTGT
CTTATACCGTGCTAAGTATACaaatgagaaaatcaaaactatCTGGTAAT
AATCAGACATTTTGTTGGCTAAGTGTGGCGGAGACCTAATAGAGGTTCAG
AAGAAAGGAGGGGAGGGACATGTAATTCTCAAGGCCAAGTTGAAATTGGG
GAGAGAATGCTGGAATCAGTGTCTTTATGGCAATTAGTTGATGTCCTCAT
CGAAAATTACGAATCTGGCGACGAATGGGCCTTCTCCAAGTGTGCAGGca
gtaaaataataaaaaacaacaggCTCACCCAGGCGGATTTGCTGGATAAT
CTTGGGTGGAGTTAGATATAACTTTTGCAGTCGTTCAGGTCCAGACGTTA
TGATGAAAAGGAATACCACAGTTAGAGATACCATTTTGGATCGTAATAAT
GCTGACTCAACAGGCTGTCGAATAAGGTCGTAACTGGAACAACGGTGGTG
TGGGACACGGTGGTGGAGACATACTTTTGAGTGTTGGTGTGTGGGGTTCG
ATAGGAGAAACGCAGAATTGATAATTGAAGATACAGTTGACGTCGTCGTG
TTGGAAGTTGAAGATGCAAG Run BLAST on NCBI transcript from alignment at sc0000025:683099..687557- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003200 ID=TCONS_00003200|Name=TCONS_00003200|organism=Clytia hemisphaerica|type=transcript|length=4459bp|location=Sequence derived from alignment at sc0000025:683099..687557- (Clytia hemisphaerica)
GCAACGAGAGCCGGAAGCCGTGACGCTGTTCTAAGAGGAGTAATCAAAGA
AAAAAGATAAAAAAAAATAGAAACCTTAGCCTACTAAGGAGAGCCGGAGC
TTCCTGTGTGACGTTGCTGAAAGGAGTAAAAGAAAAAAGAACAAAAGCCT
ACAACAAGAGCCGGAGCTGTGATATGTTGTTTAACCCCAAAGAGTGCAAC
GAGAGCCGGAAGCCGTGACGCTGTTCTAAGAGGAGTAAACAAAGAAAAAA
GATAAAAAAAAAGAAACCTTAGCCTACTAAGGAGAGCCGGAGCTTCCTGT
GTGACGTTGCTGAAAGGAGTAAAGGAAAAAAGAACAAAAGCCTACAACAA
GAGCCGGAGCTGTGATATGTTGTTTAACCCCAAAGAGTGCAACGAGAGCC
GGAAGCCGTGACGCTGTTCTAAGAGGAGTAAACAAAGAAAAAAGATAAAA
AAAAAGAAACCTAGCCTATAACGAGAGCCTGAGCCTCCAGTGTGACGTTG
TTAAAAAAAAGAAACCTTAGCCTATGTGGAGAGCCGGAGCCTCCCGTGTG
ACGTTGTTGAAAATAGAAACCTTAGCTTATAACGAGAGCAGAGCGATGAG
AAACGAGGTACAAACAATAAAAAAAAAGGAAGGAAAAAAAAAGAAAACGA
CCCAAAAAAGAAAAACAATAAAAGAAAAACAAAACGAGCAACCTAACAAA
CACCTATTGATCGAACTCAAGATGCATCCCAAACGACCTAATCCCTGGAC
TAAAAAACCTGTAGCGTGGAAAAACCAGGTAAAACCGNATCCCAAACGAC
CTAGTCCCTGGACTAAAAAACCTGTAGCGTGGAAAAACCAGGTAAAACCG
CTGGGACTAGGATTGATCGAAATGACTGGCGCGCGCGTCCTCTTCCCGTC
GTCGGTGATGGTTGATCTGAAAATAGAAGAGAAAAAAAAAACAGCGAAAG
GAAATAAGTACAAGTTAAAGGCACATAGGGATAAATAAGGGTGTCAGGTA
GGGTGGGAAGCAAAAGTATTTGTGTTTGAATGCATGAGAGGATGAGGTGA
ACTGAATGACTGAACTCAAACGCTACAAGTCGGAGTCCGTGGGACTGGGA
CGAGAAGGAGTGGGCGTGCAGTTTAAGCCCGCCATATGATGCCGGGCGTT
AGACTTGCTGATTGCGGAATTAACATGAGCTAAAGTTTAGCTCTAATTAA
TTCCTTATCAGTGTGACTGTTGAGTGATGAGTAGCTTAAACCTAGCCTAG
TGGAGAATCCAAAAATGCGTTTTGATGATAGTCGAAATACCCGAAAATAG
TGATAAGATACCCTAAACATAAACAAGGGGAAACAATGAAAAGGAAACAA
ATGTATAATTGTGAAATGAGATATCTTGACTATAAAATGAAACGTAAGAA
AGTGTTGGTTTTGGCGTGACATTTGGGGATGCATCGAGAGATGGATTTTC
TTAAAGCCTATAACCGCGGACGGTTGTGAAGACCGCAACGAGAGCCGGAG
GCGTGACGTGGGTCTGAGCCTGATCTGATCTGATGTAATAGAGCTAGATG
GGTTTACGTAGTAACCCGCACCCCCAAGTCCACCGCCAAACCCTAAGCGC
AAGCTAACAGAAGTAACTATCTTCTAAATCTATTATTTAGGTTGAAGGTG
CAAAGGCCGAAAAAAAGAAAAGGAAGGAAAAGACTCACTGAAATATTAAT
AAGAGGGGAGACCGAACAACAAGTTAGTAGTTCCTTATTTTGGGTAAAAA
TGCTTCATCCTATTAGTTACATTGCAAAAACAACGAAGTCTGGTTAAAAT
CAAGAGGTTAACAAGAGGACTACCCAAGAACCACTTGGCCACTTAATCCA
TGCCGTCCCGTCTGTTAAAGGGGTTTTAAATGGACTCAGGGGTAATACCA
AAGTTGCTAAGAAGGTGGTGCCTGCACCTATAGAAGCTCTGGGCCCTTGT
AATGCTGCCGATAAAGCTGGAAATGAGAATCTTCCCTCGGGCACTGAAAA
AAAAAGGGGGTGATTGTAACAAGGGGTGAGATGCAGATAACTTGCATTAA
GCACAGGTTGCCGGGTAGTCGAATGGGGGTTCGCTTGCAGGAGGGACAGT
TTGCAAAGATTAATCATGCAGACCATGACCATTGCCTCAAATAGGGAAAT
TTCTGTTAGCTGGTAGGAGAATTATTGGAGAGGAGAATTTGTTCAAATCT
GAAATGATTAGATTAAACGCGTATTTTGAAAGAAAAAAAAAAAATTACTA
TAAGTAACAGAATAAATAAGACAAAATAGAAGGAACGAGCAAAATGAATT
AAAAACATTAAAGAAGTTTGGGGAGAAAGCAACACGACTAAAACCCTCAA
ATTTTAGCCTAACAGGCGGAAAACTAATTGTTACAGAATGACCAGTAGTT
GTCTGCGACCAGCTGCTACCCGCAGCACTGATGATTGAAATTGAATATTG
TCAGTATAAACAAGTATGCGGCAATTCAACAAAAGTTGTATAATTGGCAA
AATGCAGTGGAACACCATCAAAGACCTGACGAGAGTGACAGACCAGGAAG
AAAGGAATGTACGTATTTATTTGGACAGAGAGTAAAGAGGAAGTTCAGAA
AGGTGGAATTAGAGGTAAATCTAAAAGAAGAAGACATAAGATCAACTACA
GAGGAACCCTTGATTGGGGCAGCATGATGATTCAACTTGGGAGAGTCAAA
TAGAATAAGGTAGCTGAAGCTGAGACTAAAAACAAGAGAAGGTCTAGTAA
ACACGTCACCAGAGCCGAGAACGTGTAGCAAGCAAAGGAAAGGTAAGAAC
AAAAGTTAAGAGGGGAAGAAGAGTAGCCAAATGAGAGCCTTAGGAAAATT
GACACAAAACTGTTTTGTAGTGGATTATCTGTGAACGTTGACTCGAGGAA
GCTTTAAGAGCAGCGTGAACAGCAAAAGCTTTGAATACTGGATTGTGAGT
AAGATCAGCTTAGTCAAAGGACCTACCGGAGATGGGCCAATTGACCTTTT
GCAAGACACCTAAACCTCGAGAGCATCAAAGGAAAGAGAAATTAAGTCAT
TAGGCACTGAGAGATCTGAAAGAAATGGGTCATTGCTCTAAGAAGCAAGA
AATCCAAACACGCTAAGTAAGGTCTAAGCCACTGTAAGATGGAATGATAG
ACATGGTGATTGGGTTTGAAGAGCTATCGCGGAAAGTAAATAGGCTTTGG
AAATTTTGTCTGGTTAAAGAAAGGGCAGCACAGGAGCAAATCAACTCAAT
ATAAGAATAGCCAGAAATAAGATTTGAAGGCACAATGAGGAACCTATTAA
ACGTGCAGAACAAAAGACACTGATTCCCAACTTGCGAATGCTGTCGGGAA
TACCAAAATAAGGACCTATCATTAGGTTAGACGCCAATCAGATGAGGTTG
GAACATAAAATTAAAATAACACGTGAGATAACCCCCCAAAAGTATGAAAA
ACACTGACAGTGTCAGCGGAGAGATTTATAATAGTTCTAAGTAACCTTCG
GCCGTGGAACCAAGCAGGTTGACAAAGGCAGGAAGATAAACAAAAACCGC
TGAATGGAGATACAGCTAAGTGGGTTGATATTTGAGGACCATATTACAAG
GACGAATGTTAAATAAAACCAGCCCGATGTACGCCCTCTTAGAATGACAT
GCCTAGTGTTATACTGTGCTTTGCGACGTGTAAAAGAAGGAGAAAGGACA
AATAATCTAAAAATAATCAGGCATTTCGTTTTCTCAATATGATGGGGGAG
ACTTGATTGGATTTATTAAAGAGATGTATGACACAACACACCACTGTCAG
AGAGGGGAGGATTCGGGGACCAACTTACAAGAGGGATACTTTAACTAAAA
CCAGTCCAAATGTACGTTCTCCTAAATGACATGCCTTGTCTTATACCGTG
CTAAGTATACAAATGAGAAAATCAAAACTATCTGGTAATAATCAGACATT
TTGTTGGCTAAGTGTGGCGGAGACCTAATAGAGGTTCAGAAGAAAGGAGG
GGAGGGACATGTAATTCTCAAGGCCAAGTTGAAATTGGGGAGAGAATGCT
GGAATCAGTGTCTTTATGGCAATTAGTTGATGTCCTCATCGAAAATTACG
AATCTGGCGACGAATGGGCCTTCTCCAAGTGTGCAGGCAGTAAAATAATA
AAAAACAACAGGCTCACCCAGGCGGATTTGCTGGATAATCTTGGGTGGAG
TTAGATATAACTTTTGCAGTCGTTCAGGTCCAGACGTTATGATGAAAAGG
AATACCACAGTTAGAGATACCATTTTGGATCGTAATAATGCTGACTCAAC
AGGCTGTCGAATAAGGTCGTAACTGGAACAACGGTGGTGTGGGACACGGT
GGTGGAGACATACTTTTGAGTGTTGGTGTGTGGGGTTCGATAGGAGAAAC
GCAGAATTGATAATTGAAGATACAGTTGACGTCGTCGTGTTGGAAGTTGA
AGATGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003200-exon-sc0000025-1575043694:687542..687557 | TCONS_00003200-exon-sc0000025-1575043694:687542..687557 | Clytia hemisphaerica | exon |
| TCONS_00003200-exon-sc0000025-1575043694:683099..687152 | TCONS_00003200-exon-sc0000025-1575043694:683099..687152 | Clytia hemisphaerica | exon |
| TCONS_00003200-exon-sc0000025-1510915933:687542..687557 | TCONS_00003200-exon-sc0000025-1510915933:687542..687557 | Clytia hemisphaerica | exon |
| TCONS_00003200-exon-sc0000025-1510915933:683099..687152 | TCONS_00003200-exon-sc0000025-1510915933:683099..687152 | Clytia hemisphaerica | exon |
| TCONS_00003200-exon-sc0000025-1491911889:687542..687557 | TCONS_00003200-exon-sc0000025-1491911889:687542..687557 | Clytia hemisphaerica | exon |
| TCONS_00003200-exon-sc0000025-1491911889:683099..687152 | TCONS_00003200-exon-sc0000025-1491911889:683099..687152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:683099..687557 - |
Blast
The following BLAST results are available for this feature:
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