TCONS_00003195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003195
Unique NameTCONS_00003195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003195 ID=TCONS_00003195|Name=TCONS_00003195|organism=Clytia hemisphaerica|type=transcript|length=613bp
CTTTATTTAAGCTGTTTAAAATCTACAagtaaaataacattttctattgg
aaaataaaatctaaaaggtAATTTGAAATTGATTAAAATAGTTTGAGTAT
ATAATTATGATGGCAAAATTcgaaaatacaaatttttagTCGAAACAAAT
TTTTAGTCGAAGGGAATATTGATCTCGTAAATTCTAAGTCATTATCAGCT
CAAatattcaatcctttttgcACAATCTTCAGATTTTTCCGATCATGAGA
TCCGTTAGACCTTGtcagaataaaaatattttatattgaTCGTAATATAT
TCTGATGTTGTAATCGTTCCATTACATTCGGTTTCTCAGTTAGGCCAGTT
CCAGCCATTATGAAAGAAAACTTCCGAGTTGCGTAAAAATaatcgttttt
tcaaaatttgtatttttccaTAATGGCATAATGGTTGACTTTTATTTTGA
GAGCAAAGGCTATAACCTCTTCTACTTCAATAGTTCTCCACTTATTTGCT
GGAATGGCTTCATCCATTGCTTTTAAAGCTTACAGTCCGAATCATTAACA
GCTTTCTCGTAAACAATTTTCTCAAGCATCAGCCATCTCCATCCCAGTAT
TGGTCTTGCTACT
Run BLAST on NCBI

transcript from alignment at sc0000025:595864..597678-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003195 ID=TCONS_00003195|Name=TCONS_00003195|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at sc0000025:595864..597678- (Clytia hemisphaerica)
CTTTATTTAAGCTGTTTAAAATCTACAAGTAAAATAACATTTTCTATTGG
AAAATAAAATCTAAAAGGTAATTTGAAATTGATTAAAATAGTTTGAGTAT
ATAATTATGATGGCAAAATTCGAAAATACAAATTTTTAGTCGAAACAAAT
TTTTAGTCGAAGGGAATATTGATCTCGTAAATTCTAAGTCATTATCAGCT
CAAATATTCAATCCTTTTTGCACAATCTTCAGATTTTTCCGATCATGAGA
TCCGTTAGACCTTGTCAGAATAAAAATATTTTATATTGATCGTAATATAT
TCTGATGTTGTAATCGTTCCATTACATTCGGTTTCTCAGTTAGGCCAGTT
TCAGCCATTACGAAAGAAAACTTCCGAGTTGCGTAAAAATAATCGTTTTT
CAAAATTTGAATTTTCCATAATGGCATAATGGTTGACTTTTGTTTTGAGA
GCAAAGGCTATAACCTCTTGTACTTCAATAGTTCTCCACTTATTTGCTGG
AATGGCTTCATCCATTGCCTTTAAAGCTTACAGTCCGAATCATTAACAGC
TTTCTCGTAAACAATTTTCTCAAGCATCAGCCATCTCCATCCCAGTATTG
GTCTTGCTACTTTCGACACCACCCATCACTTTCCTATTGAATTTCTTGAT
CTGTTTCAAAATCTTTGGTTGTAGAAAGATGTAACAAAGTGGATCTGATA
TAATGTTCAAAACATTGACACCGATAAGTCCTACGATAACCAACAATCGG
TCTTCCCCTAACTCCACATGGTTCACAATGATACTTGGTACATAATTGAA
CAAGAAAAAAGTCATAACAATAGCAAAAGGGAGAGCAAATTTACGTAACA
TCCTGTACCGGTTGTTGGTTGACCCAGTATTGTTACCACCGTGTGCCAAC
CGAGAAGTGTACAGGACTTTGCAGATGATAAACACATATGCCACCGTAGC
GTAACAAGTTGTGAATCCGTTAAAAACGTGATGCGAGTAGTTGTTGTACG
GTGCTCGCTCTGTAGATGTGGTGTGTTTTAATACCACGCCTGTTGATATA
GCGCCACACCATATAAATCCAATGGCAACATAACTAGCTATTGTTGGGAT
GTATTTACGATATTTCAACTCCAATATGACATACAGCAATCTATCTGTTG
TCAGTAAAACCAAGTTAATAATATAAGCTACATAAGCAGCTTGATAAGTT
ACCAAAAAGTCTAAGGAGAAACCGACATCATAGCCAAAGATGGCTACTGA
CCATGCATTTGTGGCAATGTTGAAGAATGAAACCAGATTCAAATGGATCA
GTAGGATGGACTGGTTTGACAGAATCTTCATCTTGAGTGTACTGATCTGT
AGTACCATTGCCAGTAGATTCAGCAACATTGCAATGACCATTAATGCTAT
GTCGAGAACAGCCACAATGGAGATTGCACCAGCATTGGTATGAAGATGTT
GTGTAGCATTTGAATGATTCGAATGTGCCATTATCGTTNCGATCATAATA
TATTGTGATGTTGTAATCGTCCCATTACATTCGGTTTCTAGTTAGGCCAG
TTCCAGCCATTATGAAAGAAAACTTCCGAGTTGCGTAAAAATAATCGTTT
TTTCAAAATTTGTATTTTTCCATAATGGCATAATGGTTGACTTTTATTTT
GAGAGCAAAGGCTATAACCTCTTCTACTTCAATAGTTCTCCACTTATTTG
CTGGAATGGCTTCATCCATTGCTTTTAAAGCTTACAGTCCGAATCATTAA
CAGCTTTCTCGTAAACAATTTTCTCAAGCATCAGCCATCTCCATCCCAGT
ATTGGTCTTGCTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001763XLOC_001763Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003195-exon-sc0000025-1575043694:597336..597678TCONS_00003195-exon-sc0000025-1575043694:597336..597678Clytia hemisphaericaexon
TCONS_00003195-exon-sc0000025-1575043694:595864..596133TCONS_00003195-exon-sc0000025-1575043694:595864..596133Clytia hemisphaericaexon
TCONS_00003195-exon-sc0000025-1510915933:597336..597678TCONS_00003195-exon-sc0000025-1510915933:597336..597678Clytia hemisphaericaexon
TCONS_00003195-exon-sc0000025-1510915933:595864..596133TCONS_00003195-exon-sc0000025-1510915933:595864..596133Clytia hemisphaericaexon
TCONS_00003195-exon-sc0000025-1491911889:597336..597678TCONS_00003195-exon-sc0000025-1491911889:597336..597678Clytia hemisphaericaexon
TCONS_00003195-exon-sc0000025-1491911889:595864..596133TCONS_00003195-exon-sc0000025-1491911889:595864..596133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:595864..597678 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351265	0.115962	0.22626	0.284514	10.4911	5.25022	5.03241	4.0997	2.91686	7.56849	4.36341	6.55626	7.20446	5.54472	6.10567	5.52436	3.62473	7.02069	11.099	17.5505	7.37972	12.6645	7.20398	5.22311	6.82892	4.49026	0.202901	2.36295	66.5944	40.8247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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