TCONS_00003169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003169
Unique NameTCONS_00003169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003169 ID=TCONS_00003169|Name=TCONS_00003169|organism=Clytia hemisphaerica|type=transcript|length=1500bp
AGCCAATGCTTTTGTCAAGAATTTGATTTTCAGTACCCAAGATATTCCCG
ATCCTAAGGAAGATGCTGACGATGACAAagaggatgatgatgataagAAG
GACGATGAGGATGCCGACAAACCAGGAGACAAAGGAACCGATGAGGAACC
TGATGACAAAGATGAAGGTGATAAAGAAGAAGAACCTGAAGACAAAATCG
AAGTTAAACCAGaagCCAAATTGAAGAAAGGCAACTTGATTGGAACTatt
gaaaagatgaagaaaGAATGGCGACTCAGTTTCGATTTAAAGATCAATAA
AAAGGCCCCCAGAGACCAGAACATCATCCATTTGACATCCACCGATAAGA
ATTGTTGCAAACCTGGAGACCGTATCCCATACATCTCCTTATACACAAAC
CAAAAGATCAGAGTATGTTCACAAAGATTTGGCAAAGGTAACAAATGTCT
CTTTAGCAAGAACAAGTTACCATTGAATAAATACGTCTCCATCTTGGTTG
AACAAACTAAAGTCAaggaaaaatatgttttaacCGTTACCGTTGGTGGT
GTAGCAAACAGAGTGAGAATTGGTGATGAAAAGCAAGAGCCAATTGAATT
TGAAACTGTCAAGATTTACGCTGCAGATAAATTCTACCAAACAGCTGATG
GAAGCATTAAAGACTTCTTGTATGCCAACCTNATTTACGCTGCAGATAAG
TTCTACCAAACAGCTGATGGAAGCATTAAAGACTTCTTGTATGCCAACCT
TGATTCAAGTGATTTGAGCGAAGatgaaaaagacaaagaagagGAGAAAG
AAGAGGAACCAGAAGACAAAGGTGATgacgaaaaagaagaagaagataac
AAAGAAAAGGAAGGAGAAgaagacaaagaaaaagaaactgaAGCCGAGGA
TGAAAAGGAGCCTGACCAGGAACCAgacaatgaagaagaaaaagTCGACC
CCAATCCTGAAGACAACGGAGAAAAGGAAGaaGAAAAGCCTGAAGAACCA
ATCGATCCAAATCCAGAAGTTGAGCCagggaaagaagaagaaaaagctgA
AGAAGATAAGGAAAAAGAAGACGAGAACAAAGACCAAGATGCAACTGACA
AAGTCAACCCAACTGAAGATGATGACGACAAATGGCAAGATAAGATCTCC
GTCCGTGAAATCTGTTTGAGTGGACGAATGAAAGGATGCAAGATCAGAAG
CCGAAGATCTCTCAAGATTTTCATTCCAAAAGGAGTGAAAGTCTTGTTAC
AACAATTCTGTCAAGGACGTAAAGGAACTCTACCTGACTTGACTTTCTGC
GGAAGAATCACATTAGATTTCAATCAAGGTAAACTTGCCCAATACAACAA
GATCAAGATCATCACCTTCTCCAAAAATGGCGGTAAACTTCCAATCACCC
AAGATGAAGAACCTGATGAAAAGGAAGATCGTGAAcaacaagaaaaagaa
gatgaggCTGGAAAACAAGAAGACAAAGAAAAAGACGAGAAAGAAGGTAT
Run BLAST on NCBI

transcript from alignment at sc0000025:468603..472968-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003169 ID=TCONS_00003169|Name=TCONS_00003169|organism=Clytia hemisphaerica|type=transcript|length=4366bp|location=Sequence derived from alignment at sc0000025:468603..472968- (Clytia hemisphaerica)
AGCCAATGCTTTTGTCAAGAATTTGATTTTCAGTACCCAAGGTAGGTTAC
GTCATCTCCGTGCTTAAAACAAAACTCCTGAAACTGTTATGTAGAATAAA
TTCAAGGTGAAGAAAAATCATTGAGATGACATACTAAATTCAAGTTGAAA
TCTGAATAATGTAAAAGGTTAATCGTATCGAGTTAGTAATCTTTTTTCCT
TATTTCCTATCATTAGATATTCCCGATCCTAAGGAAGATGCTGACGATGA
CAAAGAGGATGATGATGATAAGAAGGACGATGAGGATGCCGACAAACCAG
GTAAAGAATTACTAACTACACGACTCTAGCAAGTGGGAAAACTTGTGTAA
ACAAATACCTAATACGTATAGGTGAAAGTCTTTACGATTCGTGTTTCTAT
GTGTATGGGGCTTTCAAATTTTGTTGCGGTCACCAATCGACCCAAAATTC
TATATTGGAAAAAGATACCTCGTGGGCAGAAAAACCCTTCAAAAGTTCTT
CACAAGGGATGTACTTGGAAGAGCCACTATCCCACTTTCTTTAAGAAAAT
TATGAAACATTTTAATGCAAATAATACAGTAAACAATCCAAAACATCAAT
TTATATTCAGCTTGTAGAAAATGTCATCCTTTCATTGACTAGGAGGGCTA
TGGCATTTGATTCTATAAAAAACAATTTTTCAAAATAATAGTTTAAGTGA
AGAAAACAAATTAAGTAAATGAAATCCTGTAAATTATACTATTTTTACCA
TTGTTTTAGGAGACAAAGGAACCGATGAGGAACCTGATGACAAAGATGAA
GGTGATAAAGAAGAAGAACCTGAAGACAAAATCGAAGTTAAACCAGGTTT
GTAGAAGCATCTAATTTGCCTGTACCAAACTCTTCTTCACTGAAAAGATT
CGGTTCTTTTTTTTAATATAAAGCATCATTCGTGTGAAGGTTGGTACAGA
CTACATACTTTGATGAATCACTTTATTCTATATCATCATACTCAATAATG
TTATCAACATTACAATAACATTACAGTGTTTCCTAAAAAAAGGGACAACA
ATTTATATTAAGTAAAATCCGCAAAACTCTTCATCTTTACTGCGGGCTTA
TAATAATTGAAATAAGAATACAATTCTCTGTTCAATAAATAGATATTCAA
TTCCCAAGATGATTGAGTAGGATTTTGAGGATGACATATTAAGTATACAA
ATCATATAATTTCGCATAATTATGAAGATTTTACTTTATATAAAAATTTG
TCCGCTTTTTTTGAGACAAAATGGGCCAAAATGTATAATGGTAAAACGAC
TACTTACACAACAAACAAACTTAAAATATTAAACCTACATGTATTGACTA
TAAGGTCAGCAAGTTGCAATCGAGTNTTAAAATATTAAACCTACATGTAT
TGACTATATGGTCAGCAAGTTGCAATCGAGTGATCAAATTTGTCAGATCT
TCTTTGAAAAAAATATCTTTCACAATTTTCAATAGAAGCCAAATTGAAGA
AAGGCAACTTGATTGGAACTATTGAAAAGATGAAGAAAGAATGGCGACTC
AGTTTCGATTTAAAGATCAATAAAAAGGCCCCCAGAGACCAGAACATCAT
CCATTTGACATCCACCGATAAGAATTGTTGCAAACCTGGAGACCGTATCC
CATACATCTCCTTATACACAAACCAAAAGATCAGAGTATGTTCACAAAGA
TTTGGCAAAGGTAACAAATGTCTCTTTAGCAAGAACAAGTTACCATTGAA
TAAATACGTCTCCATCTTGGTTGAACAAACTAAAGTCAAGGAAAAATATG
TTTTAACCGTTACCGTTGGTGGTGTAGCAAACAGAGTGAGAATTGGTGAT
GAAAAGCAAGAGCCAATTGAATTTGAAACTGTCAAGATTTACGCTGCAGA
TAAATTCTACCAAACAGCTGATGGAAGCATTAAAGACTTCTTGTATGCCA
ACCTNATTTACGCTGCAGATAAGTTCTACCAAACAGCTGATGGAAGCATT
AAAGACTTCTTGTATGCCAACCTTGGTAAGTTTGCAATTTGAATCTGTGT
CAAAATTTATTGGAAGAGGTTTTGTGTGTTAGAGATGTCTGCTTTCATAA
ATGTTGTCCAATATTGTTTTAAAATACTTGAGGACATATTAAATCTACCG
AGTGGACCACGAAAAATTTCGCATAGATTTCGGCGTATTGAGCCTGGAGG
AATGTTCTAAGAAATTTCTTATATCAAGATTTGAGGCATTCTTTTTTTTT
CTTTTTTTTTGGATTTGACCGAAAATAATTCTTAAACTATAGCCAAATTC
ACTGTCGAATGTCCAAAGCTCTTCCTGCGTCAGTAATTGATAACTGAGGA
TCCTTATTCAAACTGCTATCCAATTCTTTTGAAGATTCAAGTGATTTGAG
CGAAGATGAAAAAGACAAAGAAGAGGAGAAAGAAGAGGAACCAGAAGACA
AAGGTGATGACGAAAAAGAAGAAGAAGATAACAAAGAAAAGGAAGGAGAA
GAAGACAAAGAAAAAGAAACTGAAGCCGAGGATGAAAAGGAGCCTGACCA
GGAACCAGACAATGAAGAAGAAAAAGGTCAGTTTGGCTTTTTATTTATGA
AATCTGATTGGCTGTAAATCTGCACGTAGACATAATACAATCTTATCGGA
GAGTTTATGGCTTGATACTTATTGCACATCTGGAAATTTAAATCATAACC
CGTGTGCCATTATTCTTAATCTAAAAAAAAGCAAGGAGAAACTTCGACTT
TTGGATTTTACGATTAAAATTTTTTTTTTTCATTTTTTCAACCAGTCGAC
CCCAATCCTGAAGACAACGGAGAAAAGGAAGGTATGTAGCTTCAAAAACT
TTATTTTATCGCTCGCTTGGAAAAAATATCCGCTGGTTAAGAAACTAAAC
TAAATCTACAGCAAATCGTGTGATTCTCAGAACTTTCTTGAATTAGGGAT
AGCACCAGATTTCATGAAAGAGAATAATCACTACTATTTTTTCTTTCGAT
TTTACAGAAGAAAAGCCTGAAGAACCAATCGATCCAAATCCAGAAGTTGA
GCCAGGGAAAGAAGAAGAAAAAGCTGAAGAAGATAAGGAAAAAGAAGACG
AGAACAAAGACCAAGATGCAACTGACAAAGTCAACCCAACTGAAGATGAT
GACGACAGTAAGTCAGCATTTTGTCAGCATAAAAAGAGAAAACACATTTC
CTTTAAAGCAAAATTGTTTTGAAAAAAACAAAACATCTGTATATTGCTTT
CGATGCTTTCTTTTGCTGAAAAGCACGTAGCCTTGAAAATAAAGATTTAA
ATATACTGTTTTAATTTTCATCATGTCCATCGTCCTGCTTTAACTTCTTA
AATTTTTTAAGGAAACTGTATCAGTAGTTTCCAAATAGCTAAAAACGCGT
TAACTTCAAACAAACTTCAAATTTCAAACAACCAACCATGATTATTTTGA
TTCTCTTAGAATGGCAAGATAAGATCTCCGTCCGTGAAATCTGTTTGAGT
GGACGAATGAAAGGATGCAAGATCAGAAGCCGAAGATCTCTCAAGATTTT
CATTCCAAAAGGAGTGAAAGTCTTGTTACAACAATTCTGTCAAGGACGTA
AAGGAACTCTACCTGACTTGACTTTCTGCGGAAGAATCACATTAGATTTC
AATCAAGGTTTGTGCGGAAATTACCATCTCAAAAAGAGTCTCTAGGAAAT
GTAAAATACAGACGCTCTCTAATTTGATTTTCAATGGGGTATTGCATTTT
AATCGAATAAGGGAACACATCGAATAGTACAGCATCGCTCATGAAAGTTT
CTTGTTGACAGTGACTTTCAATATTATCGAATAATAGAGCGCGTCAAATA
GTAAAACGTCAAATTACGAGAGCGTCAACTGTAAATTAATTTTGTTTGCT
TTAATCGTGAATTTTAAACTCCAAGCTCTTTTATTTCAACAAGCCAAAAT
CAGTTAATCGATCCGAATTTGATACTGTCTTATAGTCCGAAATTGATTAA
TTCAATTGATGCAATATTCTTAATATGAGCATTAAACAACTCCATTAAAC
TCTTGCTTAGAGTTGAAAAGCTGGCTACAGTAACTTATTCACATATCAAA
ATTAATCCGCAATGGGGAAAACTCTCTAAAAAGAGAGTAACGCCTCAATA
CCAACATCACATTTATAACTCCTTTAAACACTTGCTTCCTTCAGGTAAAC
TTGCCCAATACAACAAGATCAAGATCATCACCTTCTCCAAAAATGGCGGT
AAACTTCCAATCACCCAAGATGAAGAACCTGATGAAAAGGAAGATCGTGA
ACAACAAGAAAAAGAAGATGAGGCTGGAAAACAAGAAGACAAAGAAAAAG
ACGAGAAAGAAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001755XLOC_001755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003169-exon-sc0000025-1575043694:472928..472968TCONS_00003169-exon-sc0000025-1575043694:472928..472968Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:472669..472752TCONS_00003169-exon-sc0000025-1575043694:472669..472752Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:472123..472209TCONS_00003169-exon-sc0000025-1575043694:472123..472209Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:470944..471483TCONS_00003169-exon-sc0000025-1575043694:470944..471483Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:470393..470584TCONS_00003169-exon-sc0000025-1575043694:470393..470584Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:470138..470173TCONS_00003169-exon-sc0000025-1575043694:470138..470173Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:469812..469961TCONS_00003169-exon-sc0000025-1575043694:469812..469961Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:469312..469509TCONS_00003169-exon-sc0000025-1575043694:469312..469509Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1575043694:468603..468774TCONS_00003169-exon-sc0000025-1575043694:468603..468774Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:472928..472968TCONS_00003169-exon-sc0000025-1510915933:472928..472968Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:472669..472752TCONS_00003169-exon-sc0000025-1510915933:472669..472752Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:472123..472209TCONS_00003169-exon-sc0000025-1510915933:472123..472209Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:470944..471483TCONS_00003169-exon-sc0000025-1510915933:470944..471483Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:470393..470584TCONS_00003169-exon-sc0000025-1510915933:470393..470584Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:470138..470173TCONS_00003169-exon-sc0000025-1510915933:470138..470173Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:469812..469961TCONS_00003169-exon-sc0000025-1510915933:469812..469961Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:469312..469509TCONS_00003169-exon-sc0000025-1510915933:469312..469509Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1510915933:468603..468774TCONS_00003169-exon-sc0000025-1510915933:468603..468774Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:472928..472968TCONS_00003169-exon-sc0000025-1491911889:472928..472968Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:472669..472752TCONS_00003169-exon-sc0000025-1491911889:472669..472752Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:472123..472209TCONS_00003169-exon-sc0000025-1491911889:472123..472209Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:470944..471483TCONS_00003169-exon-sc0000025-1491911889:470944..471483Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:470393..470584TCONS_00003169-exon-sc0000025-1491911889:470393..470584Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:470138..470173TCONS_00003169-exon-sc0000025-1491911889:470138..470173Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:469812..469961TCONS_00003169-exon-sc0000025-1491911889:469812..469961Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:469312..469509TCONS_00003169-exon-sc0000025-1491911889:469312..469509Clytia hemisphaericaexon
TCONS_00003169-exon-sc0000025-1491911889:468603..468774TCONS_00003169-exon-sc0000025-1491911889:468603..468774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:468603..472968 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0933456	0.0304414	1.40059e-07	0.163198	0.332178	0	0	0	8.37314	4.31825	9.52959	8.38293	7.10233	7.19	7.53668e-05	4.70472	0.350553	0.122276	14.4221	15.0256	8.24628	16.3424	12.096	11.3677	3.76507	1.83754	0.325093	0.333873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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