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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003161 ID=TCONS_00003161|Name=TCONS_00003161|organism=Clytia hemisphaerica|type=transcript|length=1333bp
attgtaatacccctgaaacaatcccacaatgcatcgcttttttagaaaaa
tcaaaaactccgataagatctatttatACATTTAAACTCCCTGCACAAGC
TGGCGATTTTAATAAGTGTCTACTACCCCTATATGAGGCTCGCATTAGTA
AGACAGTGTTATGCTTATTGAAATTTATGtggtatttttgaataaaaaag
cgTTAGGTTATCTTGATGAAAGTACTTTTAATCAATATCTGTAAATCATT
TTTACATTTAAACTCCCTACACAAGCTGCACAATTTCATATCAATCAGAT
ACAGTGTAAGAAGCGCATGTTGTAAAAGATAAAATATGAAGTTGACATTG
TTTTTTGTTGCAGCACTCATCTTTGCAGTCCAATGTGAGGCGAGATGGTC
TGATAACTTTGATGATGAATACCAAGAGAGAATGGACATGATGAACCAAA
GAAGAATTGAAGGAATTGAAAATTATCGCAAAGCATTTTTGGATGAAAGA
CGAAGAGAATTGCGaatgaaaaagttcaaaaaattcAACGATGACATCCG
CTCGGAAATGGAAAGAAAGAACGCTGAAAGTCTTGAAGATGTGTACGAAG
ATAAATATTTCTCCTTAAACCCCAATGTCAGAAGTTTAgtttcaaaaaat
gataaacCCGAGGAAAACAAAAAGCCCGAGGAAAACGAAAAACCCAAGGA
AGACGAAAATCCCGAGGAAAAGgaaaaaccaaaagaaaacgaaaagcccg
aggaaaaggaaaaacccaaggaaaacaaaaagcccgaggaaaaggaaaaa
ccaaaagaaaacgaaaagcccgaggaaaaggaaaaacccaaggaaaacaa
aaagcccgaggaaaaggaaaaacacaaagaaaagaaaaagccCGAGGAGA
AGGAAAAAAccgaaaaaagtgaaaagcCTGAGGAAAAGGAAAAGCCCGAG
GAGAAGGAAAAAACCGAAGAAAGTGAAAAGCCCGAAGAAAAGGAAAAACC
CGAAGAAAGTGAAAAGCCCGAAGAAAAGGAAAAACCCGAGGAAAACAAGA
AACCAGAAGAGACGGAGAAGCCTGAGGAAAAGGAAAAGCCGTTTGTTTTC
CCATTCGGTAGGTTTTATATCATCATTGAAATTAAAGCGCCCACGGGAAT
TTACACGACAGCAAATTATTCTTTTTTCCATGTTACATGATAGACAGGGT
GCGTTTACACTGAAAGGCTTCCTTAATTAAATTGttattatacagggtgt
ccctaataaaagtatcgagtttgaacatgcgattgagtaaaaaagtttgt
gtgtgttatcgctaaaatataagaacgttctcc Run BLAST on NCBI transcript from alignment at sc0000025:300222..303237- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003161 ID=TCONS_00003161|Name=TCONS_00003161|organism=Clytia hemisphaerica|type=transcript|length=3016bp|location=Sequence derived from alignment at sc0000025:300222..303237- (Clytia hemisphaerica)
ATTGTAATACCCCTGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAA
TCAAAAACTCCGATAAGATCTATTTATACATTTAAACTCCCTGCACAAGC
TGGCGATTTTAATAAGTGTCTACTACCCCTATATGAGGCTCGCATTAGTA
AGACAGTGTTATGCTTATTGAAATTTATGTGGTATTTTTGAATAAAAAAG
CGTTAGGTTATCTTGATGAAAGTACTTTTAATCAATATCTGTAAATCATT
TTTACATTTAAACTCCCTACACAAGCTGCACAATTTCATATCAATCAGAT
ACAGTGTAAGAAGCGCATGTTGTAAAAGATAAAATATGAAGTTGACATTG
TTTTTTGTTGCAGCACTCATCTTTGCAGTCCAATGTACGTATATGTTTTT
ACCTGTATGTAATATAGTGTTTGTTTCGAATGATTGACACACTTTTGAGA
TATTTACCTTTGGGGTAAAATTTTTAATTCTATCCTCTTTAAATTGACTT
TTAGACTTTCTGGAAAATCTAATTTCGCATCGACCTGTTTTTTTTTTGTA
AAATCATGTTTTTCGAAGGTAAAATCATGTTTTTCGAAGGTAAAATCATG
TTTTTCGAATGTAAAAATATGTTTTTCGAAGTTAAAATCATATTTTTCAA
CGACCCAATCGGCTTACACATAATTACCGTGAACACCATAACTTAGTTTC
CTCCTAAAATTAAGCTGTGAAAGACAAACTGTAAGGATTTTACTGCGCAC
GTCTGAATCACATTACTATCCAAAGAATCGAAGATGAAGAACACATAGTT
AAAGCTCAAGTAGATTTTTATAATTTTCGATTTCCAGCTACCTTAAGAGA
GGAAATTTTGGCAAATGAGCCCATTCGCCAATTTTGGTGCAATTTGGTGG
AATTTATTTTGACGATTTAATAAAATTTCTAAATTTGGCGAGAATTAATT
TTTGCGAACGACCCGATTTTGTTCAATATTTTAGCAGAAAAAAAGGTTTT
TAGGAAAAATAGAGACTAAATTGAAGGAAAATTAAATTTGGCGAGAATTT
ATTTTGGCGAATGACCTATAAATTTAAATTTCTTTCCGCCAAAATTTCTT
CCCTTACCGTATTTAAAACTCTTCTGAGACTTTAATGAAAAATTAATGGA
ACGTGTTTCCTTCAAAAGAAACCGAGAATGCGCGAGTTGAAGGTCCGGGG
TCTCGCCGTATGTTACGTTTTGAGATTTCACTCTTTCATCGCATCAAATC
TTTTCTACGTTTCTTATTCGTTATTTGATTTACACCCCTGTCTCACAGCC
CCGATGGAACTTTTTTCCTCAGTGGGGCTGAAATTTCAGGGTATTTTCCC
ACCGGGGACGAAGTTTTTGTTAAGTTTTCCAGTAAGGCTGGGGTTCCAGC
GGGTCTGTGACACAGAGGTGTGGATTTCATTCAAGATCCTGGAGGATTGT
CATGGTTACTTTTGTTCTCACCGAATGCGCATCGAATGAAATCATAAAAC
ATAATTTCATAATTTTCATTTGTTGCTTTTGTTATCGATATATCAGGTGA
GGCGAGATGGTCTGATAACTTTGATGATGAATACCAAGAGAGAATGGACA
TGATGAACCAAAGAAGAATTGAAGGAATTGAAAATTATCGCAAAGCATTT
TTGGATGAAAGACGAAGAGAATTGCGAATGAAAAAGTTCAAAAAATTCAA
CGGTAAACCATTTCTTTCATATTTAAATGTTTTTCAACTCACTCAATATA
ACTTCTTCGACCGTAGTCGCACGGTCAGGTGCGTGCCACTTTATTATTTA
ANAACTCACTCAATACAACTTCTTCGACCGTAGTCGCACGGTCAGGTGCG
TGCCACTTTATTATTTAATTATACCCCTAAACTCAATCCAATCCTCTTTT
TACACCTTTTTCTATTGTCTATAGGTGCGAAAGAAAGACTGGGACGGTTT
TAGGGAGGTGAAATGGCCAAAAAAATGCCCGCGCGGCAATTGGCGGCTAC
GGTCGAAAAGGTGTATACTGCGGTTTTTTCTATCACGCAAGATTTTCCTT
ATTTTCTTTGCTCGTTATGATTTTCAAAGCTCTTTCAAGAGAAGAGGAGT
TATGGTAACACTTTCCTTCTCATGACACCCCCTTGGCTGATTCTGAGTAA
TTGATTTTGAGATTTCCTTAATTTCTTTTTTTTAAATTTATAATATATAT
GCTGTAATATTTGTTTATTTAAGATGACATCCGCTCGGAAATGGAAAGAA
AGAACGCTGAAAGTCTTGAAGATGTGTACGAAGATAAATATTTCTCCTTA
AACCCCAATGTCAGAAGTTTAGTTTCAAAAAATGATAAACCCGAGGAAAA
CAAAAAGCCCGAGGAAAACGAAAAACCCAAGGAAGACGAAAATCCCGAGG
AAAAGGAAAAACCAAAAGAAAACGAAAAGCCCGAGGAAAAGGAAAAACCC
AAGGAAAACAAAAAGCCCGAGGAAAAGGAAAAACCAAAAGAAAACGAAAA
GCCCGAGGAAAAGGAAAAACCCAAGGAAAACAAAAAGCCCGAGGAAAAGG
AAAAACACAAAGAAAAGAAAAAGCCCGAGGAGAAGGAAAAAACCGAAAAA
AGTGAAAAGCCTGAGGAAAAGGAAAAGCCCGAGGAGAAGGAAAAAACCGA
AGAAAGTGAAAAGCCCGAAGAAAAGGAAAAACCCGAAGAAAGTGAAAAGC
CCGAAGAAAAGGAAAAACCCGAGGAAAACAAGAAACCAGAAGAGACGGAG
AAGCCTGAGGAAAAGGAAAAGCCGTTTGTTTTCCCATTCGGTAGGTTTTA
TATCATCATTGAAATTAAAGCGCCCACGGGAATTTACACGACAGCAAATT
ATTCTTTTTTCCATGTTACATGATAGACAGGGTGCGTTTACACTGAAAGG
CTTCCTTAATTAAATTGTTATTATACAGGGTGTCCCTAATAAAAGTATCG
AGTTTGAACATGCGATTGAGTAAAAAAGTTTGTGTGTGTTATCGCTAAAA
TATAAGAACGTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003161-exon-sc0000025-1575043694:302854..303237 | TCONS_00003161-exon-sc0000025-1575043694:302854..303237 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1575043694:301536..301691 | TCONS_00003161-exon-sc0000025-1575043694:301536..301691 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1575043694:300222..301014 | TCONS_00003161-exon-sc0000025-1575043694:300222..301014 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1510915933:302854..303237 | TCONS_00003161-exon-sc0000025-1510915933:302854..303237 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1510915933:301536..301691 | TCONS_00003161-exon-sc0000025-1510915933:301536..301691 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1510915933:300222..301014 | TCONS_00003161-exon-sc0000025-1510915933:300222..301014 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1491911889:302854..303237 | TCONS_00003161-exon-sc0000025-1491911889:302854..303237 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1491911889:301536..301691 | TCONS_00003161-exon-sc0000025-1491911889:301536..301691 | Clytia hemisphaerica | exon |
| TCONS_00003161-exon-sc0000025-1491911889:300222..301014 | TCONS_00003161-exon-sc0000025-1491911889:300222..301014 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:300222..303237 - |
Blast
The following BLAST results are available for this feature:
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