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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003155 ID=TCONS_00003155|Name=TCONS_00003155|organism=Clytia hemisphaerica|type=transcript|length=254bp
ATATGCTTAACATTTTATAATAAATGGATGTCAAAGACGGCTACTTGAGA
TATACCAAAAAGAAGATAGGACTGTACTGGATTGGAAAGTATATATCAAA
AAGGTTTTTCCATCAGCAATATCTGCGTCACTGGACATTGGATTGTCAAA
CTGGAGTATTATGCTAAGCACTGTTTCCTTatatACAATGGCAAAGTCTA
CAGCAATCATCttcattcttttattttctgtGATGCTAGGATTAGAGAAA
CCAG Run BLAST on NCBI transcript from alignment at sc0000025:231514..233719- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003155 ID=TCONS_00003155|Name=TCONS_00003155|organism=Clytia hemisphaerica|type=transcript|length=2206bp|location=Sequence derived from alignment at sc0000025:231514..233719- (Clytia hemisphaerica)
ATATGCTTAACATTTTATAATAAATGGATGTCAAAGGTATGCAATTTTGA
ATTTAGCAAAATCATCATCAGTTTGGCAAACAATATCATCCTCTAGGATG
CAAGTCAAATTTTTTAAGTCTCTGGACCTAGACGGAGGCTTGATTATTAT
CAGTTAGGGTTACGGTTGAAGCTCGAGAGTCACAATCTGACGCCTTCTTA
GCTAGGGGCACCAGCAGTAGCAGTAATAAGTAGGGTTGGGAGCTATTGGG
AACCAAGGTTGCTTGCATTTGGTATAAGGGGAAGATTTCAGAACAATACA
AAAACAGAGTTAGAAACACTTGAGAAAGACACAGACAGAAAATCAGGAAA
GAAGGTAAGATTCCACATAAAAATGTCTGGGACGATTGGTTGAAACATGA
TGGGACTGTTGCATATCTGGTCTGTATTTTCACTTACTGTAAAATCGAAA
GAGAAATCGTGTATTTTTTAATACGCCGCTCATTAACTCAAATAAAATGA
CTTTGGAGGTTCGGTGAAATGGTGGATGGCCGTCCCATGTTTTGTCAGAT
AGATAAACCATCTTATCAGAAAGTTTGTCTCTTCCTGATGTTGCCGCACA
ACACTTAACACTTAGATAAGTCCCAAAATGGTGGATTTCAAGCAAAAAGC
CTTACAAAACAGCCAAAATATCGACTCCAAAAAAGCCAAAAAGACAAAGG
AAGTGCCATCAAAGTTGTTGCTTTTCTTTCTCTCGTAGCTTCTGCTTGCA
TCTTAGATTCTTTGTTTATATTACTTTCAGTATTGTTTACCTCTGCATAT
GGAGTCAATGGGTCTATTTTAGCGCTGTTGTTTTGGTGGAGATTCTAATA
GGCGTATTCAAGATATACATCCATATCTAAGGCAGTAAGAATCCTAATTA
GTTGTATTGCAAGACCATGAAAATATATATTGCATAGTGTAGCTTGGCTC
AGATTCATTATATCTTAGGTAACATTTGCTTTTTATTCTTTTTATTTTTA
GAAATATACATTTCCATTGACAGTAGCAATGGTCCATTTTGTAACAGTTT
TTCTCTTGGCTGCATTCTTCAGACGGCTACTTGAGATATACCAAAAAGAA
GATAGGACTGTACTGGATTGGAAAGTATATATCAAAAAGGTTTTTCCATC
AGGTAAACAGATACTCTTTTTAAAGGTGTAATTTACTATGATTTACTTAC
TTACTTTGGTATTTCGGAATTCTGAAATTGTTTCGGTATCAGAAATCCAT
GAATTTTTGCTACAAAATTTCGGTATTATAAAGTTTTTATCCCCTTTTTT
CGGAATTCATACATGAAAAATCAAATTTGATGAAAAATTAGTCAGAACGA
GGAAAAATACATAAGTATTTTTTTACGAATTTCGGAAATTTTGGCAAAAT
TATTTGGTATTTCGGAAATCGCAAACCCTGTACGCCCCCATTAAATGCTG
GCTTCAAAAATCTGCAAAAATCTCTATTTTTATTTTTTATTAAAGATTGT
ATTTTTTTCTTATTTTATAAGCAATATCTGCGTCACTGGACATTGGATTG
TCAAACTGGAGTATTATGCTAAGCACTGTTTCCTTGTAGGTAGTATGAGG
TGCTTATGTATCTATTCTATCGGCGCCCCATGAAGAACTTCAGACAGTTT
TTTTACGTTTAGTGCGCGAACAAATCTCTTTTAAATACTTGGATTTGATT
ATAGAAAGTATATATCATTTATTTTTTTTTGAATTTGGATTTTAAAATCT
AATAGCTATAGAATGTTTTGAGCCAAATTTAGAAAAAGTAATTCCTCAAA
TTTTAAGTTAGGTTGTATCCTTTCTAAGTTCTTAATATAAGAAATTAAGA
GGTCATCTTTTTCGGCTTTAAGAAGTCAAATGTCCTACTGTCCTAGGTCA
CCTAGATTATCAATTTTATACACCCTTGTAATTTCAAGATCCCATTACAT
GGAATACTCTGCCTTAAAAATTAGCTGATTCACTTTTATTTATCTTTTAT
TGCTTTTAAACAAACACTTTCAAAAGTTTCCACTTTTCGGCTTCCTTACT
GTAAAATTTAAAACACAACTAACCAGTACAAATTATACGCATAGTTCTTC
AGTTTACACAACTTTTTCTTTTTTCTTTTTAGATATACAATGGCAAAGTC
TACAGCAATCATCTTCATTCTTTTATTTTCTGTGATGCTAGGATTAGAGA
AACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003155-exon-sc0000025-1575043694:233684..233719 | TCONS_00003155-exon-sc0000025-1575043694:233684..233719 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1575043694:232568..232647 | TCONS_00003155-exon-sc0000025-1575043694:232568..232647 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1575043694:232135..232198 | TCONS_00003155-exon-sc0000025-1575043694:232135..232198 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1575043694:231514..231587 | TCONS_00003155-exon-sc0000025-1575043694:231514..231587 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1510915933:233684..233719 | TCONS_00003155-exon-sc0000025-1510915933:233684..233719 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1510915933:232568..232647 | TCONS_00003155-exon-sc0000025-1510915933:232568..232647 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1510915933:232135..232198 | TCONS_00003155-exon-sc0000025-1510915933:232135..232198 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1510915933:231514..231587 | TCONS_00003155-exon-sc0000025-1510915933:231514..231587 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1491911889:233684..233719 | TCONS_00003155-exon-sc0000025-1491911889:233684..233719 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1491911889:232568..232647 | TCONS_00003155-exon-sc0000025-1491911889:232568..232647 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1491911889:232135..232198 | TCONS_00003155-exon-sc0000025-1491911889:232135..232198 | Clytia hemisphaerica | exon |
| TCONS_00003155-exon-sc0000025-1491911889:231514..231587 | TCONS_00003155-exon-sc0000025-1491911889:231514..231587 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:231514..233719 - |
Blast
BLAST of TCONS_00003155 vs. Swiss-Prot (Human)
Match: S35C2 (Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 1.218e-19 Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 2
Query: 14 FIINGCQRRLLEIYQKEDRTVLDWKVYIKKVFPSAISASLDIGLSNWSIMLSTVSLYTMAKSTAIIFILLFSVMLGLEK 250
F+ + R L++ R VL W Y+++V P+A++ +LD+GLSNWS + TVSLYTM KS+A++FIL+FS++ LE+
Sbjct: 57 FLFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEE 135
The following BLAST results are available for this feature:
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