Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003152 ID=TCONS_00003152|Name=TCONS_00003152|organism=Clytia hemisphaerica|type=transcript|length=1834bpRun BLAST on NCBI protein sequence of TCONS_00003152-protein >TCONS_00003152-protein ID=TCONS_00003152-protein|Name=TCONS_00003152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp MAGSMRILKFAGTIALVIFFYASSICLTFYNKWMSKKYTFPLTVAMVHFVRun BLAST on NCBI transcript from alignment at sc0000025:226857..233960- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003152 ID=TCONS_00003152|Name=TCONS_00003152|organism=Clytia hemisphaerica|type=transcript|length=7104bp|location=Sequence derived from alignment at sc0000025:226857..233960- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000025:226857..233960- >TCONS_00003152 ID=TCONS_00003152|Name=TCONS_00003152|organism=Clytia hemisphaerica|type=CDS|length=10017bp|location=Sequence derived from alignment at sc0000025:226857..233960- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00003152 vs. Swiss-Prot (Human)
Match: S35C2 (Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2) HSP 1 Score: 259.61 bits (662), Expect = 1.164e-79 Identity = 150/324 (46.30%), Postives = 220/324 (67.90%), Query Frame = 2 Query: 206 TIALVIFFYASSICLTFYNKWMSKKYTFPLTVAMVHFVTVXXXXXXXXXXXEIYQKEDRTVLDWKVYIKKVFPSAISASLDIGLSNWSIMLSTVSLYTMAKSTAIIFILLFSVMLGLEKPTKXXXXXXXXXXXXXXXXTFNSSQFDMFGFVIALIAAVFSGLRWTTTQLLMQKKSMGLQNPLDAIFHIQPVMALTMVVFAFSMEGPQFASSSLIFRYSSFHVLLTSLVIILSGAFLAFLLTISEYLMVSQTSSLALSIAGILKELVTLTITAELGGDRMNGVNVIGLIICMTGISVHVVSKALNENNSGGSVNRALTD-DENPD 1174 T+ LV+ +Y SI +TFYNKW++K + FPL + M+H +FL +A R L++ R VL W Y+++V P+A++ +LD+GLSNWS + TVSLYTM KS+A++FIL+FS++ LE+ +L+LVVLLI+ GLF+FT+ S+QF++ GF + L A+ G+RWT TQ+L+QK +GLQNP+D +FH+QP+M L + EG ++S IFR+ +LL L + G LAF L SE+L+VS+TSSL LSIAGI KE+ TL + A L GD+++ +N +G +C++GIS+HV KAL+ GG +AL +PD Sbjct: 17 TLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGP--KALKGLGSSPD 338 The following BLAST results are available for this feature:
BLAST of TCONS_00003152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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