TCONS_00003146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003146
Unique NameTCONS_00003146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003146 ID=TCONS_00003146|Name=TCONS_00003146|organism=Clytia hemisphaerica|type=transcript|length=389bp
GAAGAAAGGACGAACCAATGTCTTCACTTTTCCTCATAAGAGATTGCATT
CCCAAACAAGGAGGTGACACTGCATCATTCCTCATATACGTGAAtccatt
ttcacaaaaataatgttcATTGTTGATTGTATAGGCGTCAGACATGGGTG
GTAGAAGGCGTGAAACTTTGACCGGTGAGGAATGGAACTGATAAATGGAa
gaatgaaaatgatttacTAAAGataatttgACAGATTTATACATACAAGC
TACTTGTCCATCGAACTTGACGTTCATCGTGTAGTTAGAAGGACCACAAG
CAAGAAGGATCCGAAATAAACGACCCTTGAATTCCCTCATGTGAGATACA
GATGGTTTCAGctaataaataaagaaaaaatatttaaag
Run BLAST on NCBI

transcript from alignment at sc0000025:178903..179817-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003146 ID=TCONS_00003146|Name=TCONS_00003146|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at sc0000025:178903..179817- (Clytia hemisphaerica)
GAAGAAAGGACGAACCAATGTCTTCACTTTTCCTCATAAGAGATTGCATT
CCCAAACAAGGAGGTGACACTGCATCATTCCTCATATACGTGAATCCATT
TTCACAAAAATAATGTTCATTGTTGATTGTATAGGCGTCAGACATGGGTG
GTAGAAGGCGTGAAACTTTGACCGGTGAGGAATGGAACTGATAAATGGAA
GAATGAAAATGATTTACTAAAGGTAAGAGGTTTTTAATTTATTTGAGTGA
ATTTCTAGCATTGAGTTGTAAGCCAGGAAGGGGCTACAGTAGGAAGAAAC
TTTACAATCAAGCATACATATGGATTACCTGGTTTTCCGGCCAATCATTG
TCTTTGTCTGTGAATATATTAAAAGAATATCAACTTTTTTTGAAACCCTC
AAATATTGGACATATGTTTGGAAAAAAATTATGGCTATACTAGAAGAAAT
TTTATTATTCACCAGTAAATTTTAGTTGAGAAACTTTTTATAATTAGCGA
GAATTGATTTTGGCGAATGATCCTTTTTTCTTGAAGAATGGTTGATGAAA
AAGGGGGAATAATACGGTTTTTAGGAAAAAATCTCTACCATATTGATTAA
GTTATCGAGCGCAAAGGGGAAGATTAATTTTGAGCATGGCAATCTAGGTC
TAAGGCCCAGAAAACTTGAATTGACGTCAGATTTAGAACGGCCAGATTAT
TTAAATTTGGTGAAAAGTAACTTTGCAAGCTTTTGCGAATTTTTTTAGAT
AATTTGACAGATTTATACATACAAGCTACTTGTCCATCGAACTTGACGTT
CATCGTGTAGTTAGAAGGACCACAAGCAAGAAGGATCCGAAATAAACGAC
CCTTGAATTCCCTCATGTGAGATACAGATGGTTTCAGCTAATAAATAAAG
AAAAAATATTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001743XLOC_001743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003146-exon-sc0000025-1575043694:179596..179817TCONS_00003146-exon-sc0000025-1575043694:179596..179817Clytia hemisphaericaexon
TCONS_00003146-exon-sc0000025-1575043694:178903..179069TCONS_00003146-exon-sc0000025-1575043694:178903..179069Clytia hemisphaericaexon
TCONS_00003146-exon-sc0000025-1510915933:179596..179817TCONS_00003146-exon-sc0000025-1510915933:179596..179817Clytia hemisphaericaexon
TCONS_00003146-exon-sc0000025-1510915933:178903..179069TCONS_00003146-exon-sc0000025-1510915933:178903..179069Clytia hemisphaericaexon
TCONS_00003146-exon-sc0000025-1491911889:179596..179817TCONS_00003146-exon-sc0000025-1491911889:179596..179817Clytia hemisphaericaexon
TCONS_00003146-exon-sc0000025-1491911889:178903..179069TCONS_00003146-exon-sc0000025-1491911889:178903..179069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:178903..179817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.384404	0.44633	0.436664	0	0	0	0.711694	0.498274	0.617192	0.998436	0.525066	0.917588	0	0.335757	0.240213	0	0.606622	1.67616	2.41173	1.1434	1.39427	0.903957	1.84911	2.11616	0.944311	0	0.57686	0	0.445772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top