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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003141 ID=TCONS_00003141|Name=TCONS_00003141|organism=Clytia hemisphaerica|type=transcript|length=2368bp
AGCGCGAAAAGTTTTGATTGATTACCATATCAATATTATACACAAAGAAT
AATACTATTTACAAAGCCTTatttatcattcaaaatttCTATTACACTGT
TTTTTCGGAAAACCAAGACTAGCCTGTATTAGCCAAACTCTTCgttgttg
aaaagataactcAAAATACAGTTTGTTAAGGTTAGATTTCTTTCCGTATG
TGaagtatttttgcaaatttctaaATACCTGCAAGAATATTCATACAAAA
AATGATTACTTCAAGTTAACCCAAATTTTAGAGTTCACCgtgttcaaaaa
ataatttagttttttttccaCGGGATATTAGATATTCCTGCGTGGGAGTA
GGTCTCCTTCTCAGAAGTTGCAAATTACTGAAACATCTTGGTAACTGGCA
ACAAGTGtagtataattttgaaaaagaaaccaaaaaattatttaaaataa
aaaaaataaaactttctacacctCTGTTTCTCATTATAAATGTTATTTAC
AACAATATTAAATTTGGAATATCACctctttttttcttcgaaaaggGAAA
TATTTTAGATGAGAAACTCGAAAAACAAATTATGATATGGTAATATACCA
AAAAAGCCAAATTGCGATAAAAATGTCTCAACACTTTCCAAGTGAGTCCA
TATTTATTCAACCAAggattcaatttcaaaaaattattaggATTGAAATT
CTTTTACAGCCTTTCTGTTAGAttgaaaaaaagctttttaagttTGTTTC
CAAAGCCGAAAAAGAAAGTAGAAGGCCTGTCAGGGACAGTTTTTTTTTCG
ACCAGAAGTTTGATTTTGATTCTAATAATTTTCTCCAATCCACCATCCAT
CACTCACATTATCCTTTCTACACTCCCAGAAATCGTTTATAAATTCTCTA
GCTGACAAACAAACCAAATACATTCATTTATGTCCATTGAAAGAATAAAA
CATACCAGCCGGTAATATTTCCTATTCTAAGCCGTACAATTCTATCTAGA
TAAAACGACCAACCATCATGATATTTGATTCTTCATCGGAGAGATGCTTT
TAAACAGCGACGCCCATCTTACTTTCTGACGGGCGGTTTATATCTCATCA
AGGGTGGACGGGCGGGCATTTTTTATCGATAAGGTCGGAATTCAAGACAT
TTGCTGTAAACAAATATAATCATCATCTTCTTGATTATCCATTAGATGGG
CGGTGTCCGTCGTCTCTATTGTATCTACTAGTTCATCTAACGCCCCTTGC
CGACTGCTCGACGCCCCTTGCCCATTACTGTCTCTTTCTGCATGAAAACT
CTGATCATACGTAGGGGGCGGGCAGTCTGTTTTATAAGGATCATCATGCT
GATAACCGGGTAGTGATTCTATTAATACGGCATGTCTTAAATCGTCCGGT
GATAGTCCACTAAAAACGTACGCCGGTTGAGGCACGGCAGGAACTTCTTC
GTAACATGTTTCGACTGCTGAGCTCTATAAAAGaaagggaaaaataaaaa
aaaactaagaccaatatgaaaatttggaaaatatttccttgaaaattaat
aaacagcGGAGGTAATAAGCGTGTCCTgggagaaatattttcaaaaaata
gttgCCATGTTTTGATCTAAGGCCCGTAGAGAAAAATTATTAACAACTTC
CTCCTTTTGAGAATTATTGGTAAACTTACGCTAGAACTGTCACGTTGTCG
TTGCAATCGCCTCCTTCTTATACAGACGTAGATGGTCCAGAACAAGACCT
TCACTATCAAAACGACAATGATGATGCTAGAGGTGGAaaagaaatataat
ataaatatataTAAATCAGTAAAATTTCCTCAGTTTGGACAGATCTTATA
gaaagaaaaatcatgaaatttctTTCACTTTCTTCTCCCTATCAACTTCA
CATAAatttcttttaaccatattgaaaaattgataaaaattgtCAAATTA
ATGAACAATGTAAtaggttctaataaagaaaGTCGCGGAAAAAACTTGAG
CAGGTAGAATTTGGCAATAGCTTGgtggttgaaatttagcaattACTTAC
ATATAAAATAGAATTTGCATTTTTGCTTCACACTAATCCtcctaaaatat
taaaatgtaaATAACACGTTAACAGCGAgagaaaaatatcattttaagGC
CAGcaaattattttacaaaaaactaGATATACCAAgagtaaaagaaaaac
aaagcgATATAAATAGTAAGAGTAGCGTGGGCTTTGTGTAGAGTACAAAA
TGGTTTCTATTTCTGGATACAgagaagattttcaaaatattttccctaaC
TGATATTTCGAATGATGGAATTAACCACTCTCTCCCTATGAAAACAAAGA
TAAATTCGGACATCTGAA Run BLAST on NCBI transcript from alignment at sc0000025:52120..54649- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003141 ID=TCONS_00003141|Name=TCONS_00003141|organism=Clytia hemisphaerica|type=transcript|length=2530bp|location=Sequence derived from alignment at sc0000025:52120..54649- (Clytia hemisphaerica)
AGCGCGAAAAGTTTTGATTGATTACCATATCAATATTATACACAAAGAAT
AATACTATTTACAAAGCCTTATTTATCATTCAAAATTTCTATTACACTGT
TTTTTCGGAAAACCAAGACTAGCCTGTATTAGCCAAACTCTTCGTTGTTG
AAAAGATAACTCAAAATACAGTTTGTTAAGGTTAGATTTCTTTCCGTATG
TGAAGTATTTTTGCAAATTTCTAAATACCTGCAAGAATATTCATACAAAA
AATGATTACTTCAAGTTAACCCAAATTTTAGAGTTCACCGTGTTCAAAAA
ATAATTTAGTTTTTTTTCCACGGGATATTAGATATTCCTGCGTGGGAGTA
GGTCTCCTTCTCAGAAGTTGCAAATTACTGAAACATCTTGGTAACTGGCA
ACAAGTGTAGTATAATTTTGAAAAAGAAACCAAAAAATTATTTAAAATAA
AAAAAATAAAACTTTCTACACCTCTGTTTCTCATTATAAATGTTATTTAC
AACAATATTAAATTTGGAATATCACCTCTTTTTTTCTTCGAAAAGGGAAA
TATTAAGGGTTTTAGGGCAAGATTCCCCGCGAGAAAAACTTCAAAATACC
ATCTTTGATATTTTCATCTGCAAAAAACTTTCGTTTAGTACGATTAGAAT
CTTTATAAATTTGAAATATTGAACAAGAAATTTTTTTTATATCCCTATCT
ACTTCAACGAAACATTTTAGATGAGAAACTCGAAAAACAAATTATGATAT
GGTAATATACCAAAAAAGCCAAATTGCGATAAAAATGTCTCAACACTTTC
CAAGTGAGTCCATATTTATTCAACCAAGGATTCAATTTCAAAAAATTATT
AGGATTGAAATTCTTTTACAGCCTTTCTGTTAGATTGAAAAAAAGCTTTT
TAAGTTTGTTTCCAAAGCCGAAAAAGAAAGTAGAAGGCCTGTCAGGGACA
GTTTTTTTTTCGACCAGAAGTTTGATTTTGATTCTAATAATTTTCTCCAA
TCCACCATCCATCACTCACATTATCCTTTCTACACTCCCAGAAATCGTTT
ATAAATTCTCTAGCTGACAAACAAACCAAATACATTCATTTATGTCCATT
GAAAGAATAAAACATACCAGCCGGTAATATTTCCTATTCTAAGCCGTACA
ATTCTATCTAGATAAAACGACCAACCATCATGATATTTGATTCTTCATCG
GAGAGATGCTTTTAAACAGCGACGCCCATCTTACTTTCTGACGGGCGGTT
TATATCTCATCAAGGGTGGACGGGCGGGCATTTTTTATCGATAAGGTCGG
AATTCAAGACATTTGCTGTAAACAAATATAATCATCATCTTCTTGATTAT
CCATTAGATGGGCGGTGTCCGTCGTCTCTATTGTATCTACTAGTTCATCT
AACGCCCCTTGCCGACTGCTCGACGCCCCTTGCCCATTACTGTCTCTTTC
TGCATGAAAACTCTGATCATACGTAGGGGGCGGGCAGTCTGTTTTATAAG
GATCATCATGCTGATAACCGGGTAGTGATTCTATTAATACGGCATGTCTT
AAATCGTCCGGTGATAGTCCACTAAAAACGTACGCCGGTTGAGGCACGGC
AGGAACTTCTTCGTAACATGTTTCGACTGCTGAGCTCTATAAAAGAAAGG
GAAAAATAAAAAAAAACTAAGACCAATATGAAAATTTGGAAAATATTTCC
TTGAAAATTAATAAACAGCGGAGGTAATAAGCGTGTCCTGGGAGAAATAT
TTTCAAAAAATAGTTGCCATGTTTTGATCTAAGGCCCGTAGAGAAAAATT
ATTAACAACTTCCTCCTTTTGAGAATTATTGGTAAACTTACGCTAGAACT
GTCACGTTGTCGTTGCAATCGCCTCCTTCTTATACAGACGTAGATGGTCC
AGAACAAGACCTTCACTATCAAAACGACAATGATGATGCTAGAGGTGGAA
AAGAAATATAATATAAATATATATAAATCAGTAAAATTTCCTCAGTTTGG
ACAGATCTTATAGAAAGAAAAATCATGAAATTTCTTTCACTTTCTTCTCC
CTATCAACTTCACATAAATTTCTTTTAACCATATTGAAAAATTGATAAAA
ATTGTCAAATTAATGAACAATGTAATAGGTTCTAATAAAGAAAGTCGCGG
AAAAAACTTGAGCAGGTAGAATTTGGCAATAGCTTGGTGGTTGAAATTTA
GCAATTACTTACATATAAAATAGAATTTGCATTTTTGCTTCACACTAATC
CTCCTAAAATATTAAAATGTAAATAACACGTTAACAGCGAGAGAAAAATA
TCATTTTAAGGCCAGCAAATTATTTTACAAAAAACTAGATATACCAAGAG
TAAAAGAAAAACAAAGCGATATAAATAGTAAGAGTAGCGTGGGCTTTGTG
TAGAGTACAAAATGGTTTCTATTTCTGGATACAGAGAAGATTTTCAAAAT
ATTTTCCCTAACTGATATTTCGAATGATGGAATTAACCACTCTCTCCCTA
TGAAAACAAAGATAAATTCGGACATCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003141-exon-sc0000025-1575043694:54099..54649 | TCONS_00003141-exon-sc0000025-1575043694:54099..54649 | Clytia hemisphaerica | exon |
| TCONS_00003141-exon-sc0000025-1575043694:52120..53936 | TCONS_00003141-exon-sc0000025-1575043694:52120..53936 | Clytia hemisphaerica | exon |
| TCONS_00003141-exon-sc0000025-1510915933:54099..54649 | TCONS_00003141-exon-sc0000025-1510915933:54099..54649 | Clytia hemisphaerica | exon |
| TCONS_00003141-exon-sc0000025-1510915933:52120..53936 | TCONS_00003141-exon-sc0000025-1510915933:52120..53936 | Clytia hemisphaerica | exon |
| TCONS_00003141-exon-sc0000025-1491911889:54099..54649 | TCONS_00003141-exon-sc0000025-1491911889:54099..54649 | Clytia hemisphaerica | exon |
| TCONS_00003141-exon-sc0000025-1491911889:52120..53936 | TCONS_00003141-exon-sc0000025-1491911889:52120..53936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:52120..54649 - |
Blast
The following BLAST results are available for this feature:
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