TCONS_00003139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003139
Unique NameTCONS_00003139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003139 ID=TCONS_00003139|Name=TCONS_00003139|organism=Clytia hemisphaerica|type=transcript|length=834bp
TAATTTTGGCGAACGACACTTTTTTGTTCAATATTTTAGCTGAAAACGAG
GGGGAAAAAGGGTTTTTAGGAGAAATAGAGAGTAAATTGAAAGAAAATTA
AATTTGGCGAGAATTTATTTTGGCGAATGAAATATGAATTTCTTTCCGCC
AAAATTTCTTCCCTTATGGTATTAGCCAAAAGCTTTTTGGGTTTTGGGAT
TCTGCAGGAATGTGGATCTCTACTAGGAGCCCTTTTCAGCTTGTACATTA
TTCAATCTCATAAAAAAAGTTTTCCTCCAATCTTAGGGAAGAAAGCAGAC
CAACGCCAAATTGCAAATTGATAAATACAAAAAGATAAGCAACAAGACTG
TCGACCAATCGAAATACGGACAAAACAAGCCAAAACAAGAAGGAACAAAA
GTGATTTCGCAAAAAGAAGTTAGAACAGCATCAGCAACTTTAAACAAAAA
GTGTGATCTAAAATGCAAAAACACTACGTTCAAGGTAAGCCTTTTGGAGC
GGTTTCTACTGTATTTCTATTTGGTTGCAGGATGCTCTTGAGGCCCATTT
TCGCAACTATAAATGCTTTTAGCGAGCACCCCGTCAGCACCTTGGACTGA
CTGCCTAATttccctcacatggtatgggttcacccgggcgaaggttcatt
cacttgacTAGTGAACTGCTGCGattgggaatcgaacctcagttcGTGCA
GCAACCAAGATCAATGGCCACTATACCAAAGTGCCTAACAGCAGTAAACC
ACCGGAAATGTCAATTACCTCTAATGAATCAACCCCACTTTCAAACCAAT
GAAAAAGGCTTCAAGACATCTGAGTCCGAATCAG
Run BLAST on NCBI

transcript from alignment at sc0000025:988839..989672+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003139 ID=TCONS_00003139|Name=TCONS_00003139|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at sc0000025:988839..989672+ (Clytia hemisphaerica)
TAATTTTGGCGAACGACACTTTTTTGTTCAATATTTTAGCTGAAAACGAG
GGGGAAAAAGGGTTTTTAGGAGAAATAGAGAGTAAATTGAAAGAAAATTA
AATTTGGCGAGAATTTATTTTGGCGAATGAAATATGAATTTCTTTCCGCC
AAAATTTCTTCCCTTATGGTATTAGCCAAAAGCTTTTTGGGTTTTGGGAT
TCTGCAGGAATGTGGATCTCTACTAGGAGCCCTTTTCAGCTTGTACATTA
TTCAATCTCATAAAAAAAGTTTTCCTCCAATCTTAGGGAAGAAAGCAGAC
CAACGCCAAATTGCAAATTGATAAATACAAAAAGATAAGCAACAAGACTG
TCGACCAATCGAAATACGGACAAAACAAGCCAAAACAAGAAGGAACAAAA
GTGATTTCGCAAAAAGAAGTTAGAACAGCATCAGCAACTTTAAACAAAAA
GTGTGATCTAAAATGCAAAAACACTACGTTCAAGGTAAGCCTTTTGGAGC
GGTTTCTACTGTATTTCTATTTGGTTGCAGGATGCTCTTGAGGCCCATTT
TCGCAACTATAAATGCTTTTAGCGAGCACCCCGTCAGCACCTTGGACTGA
CTGCCTAATttccctcacatggtatgggttcacccgggcgaaggttcatt
cacttgacTAGTGAACTGCTGCGattgggaatcgaacctcagttcGTGCA
GCAACCAAGATCAATGGCCACTATACCAAAGTGCCTAACAGCAGTAAACC
ACCGGAAATGTCAATTACCTCTAATGAATCAACCCCACTTTCAAACCAAT
GAAAAAGGCTTCAAGACATCTGAGTCCGAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001739XLOC_001739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003139-exon-sc0000025-1491911889:988839..989672TCONS_00003139-exon-sc0000025-1491911889:988839..989672Clytia hemisphaericaexon
TCONS_00003139-exon-sc0000025-1510915933:988839..989672TCONS_00003139-exon-sc0000025-1510915933:988839..989672Clytia hemisphaericaexon
TCONS_00003139-exon-sc0000025-1575043694:988839..989672TCONS_00003139-exon-sc0000025-1575043694:988839..989672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:988839..989672 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170293	0.15851	1.12959	1.00463	0	0.122889	0	0.241769	0	0	0	0.0530823	0.0916815	0.339298	0.225629	0.267686	0.0426128	0.164392	0	0.0631433	0.271927	0.41631	0.0650849	0.287448	0	0.113043	0.0950218	0.137986	0.189012	0.178991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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