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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003127 ID=TCONS_00003127|Name=TCONS_00003127|organism=Clytia hemisphaerica|type=transcript|length=1190bp
GTTAGTATTGCGGTATTAAACCAATAGGCCACGAACAATACTCCGAGTAC
ACGACCACGCATACTACgacaaaaaagaagaacagtTTCAAGCTATCCAT
GCCAAATATACAATGCCCGCAGGATACAAGTGAAGCCATCCGACAAAGAC
CAGCATTAAATCGAACGAAATCGGAAGATAGTCAAACGAGTGGTATTGAT
ATGCGAATCTCAGAACAAGATCTCGGCTCGGATGCCGAAAGTTTACCGTC
TTGCGAAGAAAGCTTAACGAATTCCGAAAATAGTCCACCGAACAGCCCCG
AACTTTTTAAACAGAAACAAGAAGTTAGCCGACGTGAATCTGCTCCTGCG
AGTTTCAATATCAAGATTTTAGACGACATACAAGGTTTGAATGAAATTAA
TGAGGAAAGATCGAGAGAATTTCATCGACGATATAGTTCAGTCGAGGAAC
GAACAAGTCGTGTTCGATTTAATCTCGAGGAATCTtttaaagaagaagaa
gaccATTATAGTAAacaatttgatgaaaatgaagagCAGCCAAAATTTTC
GGACATTGAAGGGTATAAGGTTGCTCCTTTAACTCAATATCCACGCAAAG
TTTCAAGTCCTCCTTGTTTGTCATGTGATATCGAGGAAGTGCGACAAGAA
TATCAACAGAACCAGCAAGTACCGACAGCACAACGAAAAGACTCGTCGGA
CCGTTCTCGTAAATGTTCGGTATACTCTGATAATTCAGGATCTATTCAGA
TTCTTCCAGGACAATCTGTACGAAAAGTTTCGTCGCAAGAAAATTTAATT
CGCGAAGAAGAAGAGTCGACGCCTATTGCACCTTTACGAAATAAATATGA
TCGTAAAATAAGTTTACAGGAACCTAAATTACGGAAAGACTCACGTGTTG
ATAATCGTAAGTTGAGTCTCCAAGAGAACTCTAGCCGACGAAAATCGGTA
TGTATTGACGAGAAATCTACAAACGAAAACTCACGAAAATTTAGTTTACA
AATACCTCGAAGACGCCCCAGTTTTTCAGATCGTAAATTAAGCTTACAAG
AACGTAAAAACTCAACACACGAGCGTAAAATGTCATCGCACNTTGTCTCT
TAAgcttttggtttgtttttgtggaatttaaTCTGTATTGATGGGGTatt
aagatttttgtaaggGCCCAGTCATAGTTTTCGGATATTC Run BLAST on NCBI transcript from alignment at sc0000025:771265..772675+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003127 ID=TCONS_00003127|Name=TCONS_00003127|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at sc0000025:771265..772675+ (Clytia hemisphaerica)
GTTAGTATTGCGGTATTAAACCAATAGGTGGTTGATTTAATTAATTCCAC
TTTGATTTGATTGCGTTATCTTTATTCATTTGAATTGAGTCAAtcttgta
ttttcattttctgatcTATATCGCAATTTGTTGAAATCTAATATATGCGG
TCTGTTTAGCCGAGTATTTGATTTGTGTCTGCTTGGGATGTCGTAGATTT
ATTCATGCAGCATTTTTGTAACTTTATAAATTTACTTTTCTTTGTCAGGC
CACGAACAATACTCCGAGTACACGACCACGCATACTACgacaaaaaagaa
gaacagtTTCAAGCTATCCATGCCAAATATACAATGCCCGCAGGATACAA
GTGAAGCCATCCGACAAAGACCAGCATTAAATCGAACGAAATCGGAAGAT
AGTCAAACGAGTGGTATTGATATGCGAATCTCAGAACAAGATCTCGGCTC
GGATGCCGAAAGTTTACCGTCTTGCGAAGAAAGCTTAACGAATTCCGAAA
ATAGTCCACCGAACAGCCCCGAACTTTTTAAACAGAAACAAGAAGTTAGC
CGACGTGAATCTGCTCCTGCGAGTTTCAATATCAAGATTTTAGACGACAT
ACAAGGTTTGAATGAAATTAATGAGGAAAGATCGAGAGAATTTCATCGAC
GATATAGTTCAGTCGAGGAACGAACAAGTCGTGTTCGATTTAATCTCGAG
GAATCTtttaaagaagaagaagaccATTATAGTAAacaatttgatgaaaa
tgaagagCAGCCAAAATTTTCGGACATTGAAGGGTATAAGGTTGCTCCTT
TAACTCAATATCCACGCAAAGTTTCAAGTCCTCCTTGTTTGTCATGTGAT
ATCGAGGAAGTGCGACAAGAATATCAACAGAACCAGCAAGTACCGACAGC
ACAACGAAAAGACTCGTCGGACCGTTCTCGTAAATGTTCGGTATACTCTG
ATAATTCAGGATCTATTCAGATTCTTCCAGGACAATCTGTACGAAAAGTT
TCGTCGCAAGAAAATTTAATTCGCGAAGAAGAAGAGTCGACGCCTATTGC
ACCTTTACGAAATAAATATGATCGTAAAATAAGTTTACAGGAACCTAAAT
TACGGAAAGACTCACGTGTTGATAATCGTAAGTTGAGTCTCCAAGAGAAC
TCTAGCCGACGAAAATCGGTATGTATTGACGAGAAATCTACAAACGAAAA
CTCACGAAAATTTAGTTTACAAATACCTCGAAGACGCCCCAGTTTTTCAG
ATCGTAAATTAAGCTTACAAGAACGTAAAAACTCAACACACGAGCGTAAA
ATGTCATCGCACNTTGTCTCTTAAgcttttggtttgtttttgtggaattt
aaTCTGTATTGATGGGGTattaagatttttgtaaggGCCCAGTCATAGTT
TTCGGATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003127-exon-sc0000025-1491911889:771265..771291 | TCONS_00003127-exon-sc0000025-1491911889:771265..771291 | Clytia hemisphaerica | exon |
| TCONS_00003127-exon-sc0000025-1510915933:771265..771291 | TCONS_00003127-exon-sc0000025-1510915933:771265..771291 | Clytia hemisphaerica | exon |
| TCONS_00003127-exon-sc0000025-1575043694:771265..771291 | TCONS_00003127-exon-sc0000025-1575043694:771265..771291 | Clytia hemisphaerica | exon |
| TCONS_00003127-exon-sc0000025-1491911889:771513..772675 | TCONS_00003127-exon-sc0000025-1491911889:771513..772675 | Clytia hemisphaerica | exon |
| TCONS_00003127-exon-sc0000025-1510915933:771513..772675 | TCONS_00003127-exon-sc0000025-1510915933:771513..772675 | Clytia hemisphaerica | exon |
| TCONS_00003127-exon-sc0000025-1575043694:771513..772675 | TCONS_00003127-exon-sc0000025-1575043694:771513..772675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:771265..772675 + |
Blast
The following BLAST results are available for this feature:
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