TCONS_00003116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003116
Unique NameTCONS_00003116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003116 ID=TCONS_00003116|Name=TCONS_00003116|organism=Clytia hemisphaerica|type=transcript|length=108bp
CAGTAGTAGATCACATGCAATCTTCACCGTCAACGTCACACAGGCAAAAT
TCATGCATGATATGCCAAGTGAAACGACAAGTAAAATCAATTTGGTTGAT
CTGGCTGC
Run BLAST on NCBI

transcript from alignment at sc0000025:709239..709531+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003116 ID=TCONS_00003116|Name=TCONS_00003116|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at sc0000025:709239..709531+ (Clytia hemisphaerica)
CAGTAGTAGATCACATGCAATCTTCACCGTCAACGTCACACAGGTAATTA
TAACCCTTAGAAATACATTTGCTTATGAAAGTATACATCTATTTTCCTTT
ATGACAAACcagatatttatttttgagatCGGTTAGATCATGTTAAGGAA
AATATGTTGATCTATGTTGATCTATGTTGAATAACTTCAACCCTTCATTG
ATATTAATTCCATTTCTATCAATTTAAGGCAAAATTCATGCATGATATGC
CAAGTGAAACGACAAGTAAAATCAATTTGGTTGATCTGGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001733XLOC_001733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003116-exon-sc0000025-1491911889:709239..709281TCONS_00003116-exon-sc0000025-1491911889:709239..709281Clytia hemisphaericaexon
TCONS_00003116-exon-sc0000025-1510915933:709239..709281TCONS_00003116-exon-sc0000025-1510915933:709239..709281Clytia hemisphaericaexon
TCONS_00003116-exon-sc0000025-1575043694:709239..709281TCONS_00003116-exon-sc0000025-1575043694:709239..709281Clytia hemisphaericaexon
TCONS_00003116-exon-sc0000025-1491911889:709467..709531TCONS_00003116-exon-sc0000025-1491911889:709467..709531Clytia hemisphaericaexon
TCONS_00003116-exon-sc0000025-1510915933:709467..709531TCONS_00003116-exon-sc0000025-1510915933:709467..709531Clytia hemisphaericaexon
TCONS_00003116-exon-sc0000025-1575043694:709467..709531TCONS_00003116-exon-sc0000025-1575043694:709467..709531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:709239..709531 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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