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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003113 ID=TCONS_00003113|Name=TCONS_00003113|organism=Clytia hemisphaerica|type=transcript|length=1499bp
CAACGTTGATTAGTAAAGCTTTCTCTTTTTAAGGTTCAAGGATGGATTTT
ACAATTATTCCATATTGGCGTTTTGATTTTCGTTTTCGGTTTCAAACTGG
TCGATCAACTTCATCTGCTACATTTGAACGTGATAGCAGCATTCATTGAT
TCAGTGTATCGTCTCTTTTTCCAAGTATATGATGTATACGATTGGCCTCT
ACGAATGTTCCCTCTCAACGCCATCTTTGTTTGTGTTACGATTGCCAACA
GTTACACGTTAGCTAAACATTTTACAAACCAGCGTGGTCGGAAATTAATC
ATCACCTTCCAGCTTGGTTCACAGTTGATGCTTGGAGCACCTACACTATA
TTTAACTTTCTATCTGCTTGTTCCATGGGTTGTCAAACTGGGACCTTTTC
AACAAGCACTCGTTGCCGGAGTGTCGCCCATCCTTGGTGCTATCACTAAA
GCAATAAGCCGGATCGCGATCCAGAACGACTCCAATATCAACCATCCTGG
GAAGTCTTATATGTTGGTTATTGTAGCTTACGCTGGTGCAGCTCTTGTTT
ACCGAACCATTCAAGCAGAACTAGAATCGTCCGCCCTGTttctttttctg
tgttttgcACATGCCTTGATTGGATTCTTAGAGCGTTTATCAGTTGTCCT
TCGAGATCATTTTTACTTTTGGTTTTACAAGAAAGTTCTAAAGAAAGAGC
GTGATTATAACTCCTTTGTTGGTTCGTTTCGCACGCCGCGTACGCAAAGA
TTAGTTGCCGATATCACCATTTGTAATATCATTCACGAGACCAATGCGCT
AATCTATACCAACGCGTTTGTTCAGTTTTACTCACTACAGATTGGGATTG
ATGGTCAAGAAAATGCTGTAGATGTCTATGgtgttgttttgaaatttttc
atacGCTGCTTTTCCGCCATTTTGATTGAATATGTTTTCACAGCTTTTGG
AATTTTCATTCTTACCTGGTACATGAATATTCCCGTCATTCGTGTCTGGC
GGAAGAAATGGAAATCAATATTGGCAGGTAATCTATTCGTGTGTGCATGC
TTGGTTCTTTATTCCACTCAATATTTGCTTGTGGTTGTGGCAAACCGTTA
TCAACATACGATCCAATCAAAAAACGAAACGAACACTAGAGTTGACGCTC
TATAATCCGATTTCCAAGTGGAATTGAATttccatcgaataagggagagt
atcaaatagtagagcgtcgaattagagagcttcAACTGTACCTTGTAGCT
CCTGTAGATATAATGGTCCCCTAGCAAAAGGTGTACCCCcctattttttt
agaaattcagTCATGTACAAAATAAGGTTGTAAAGCTAAATACTATTTTA
ATGAGATAAATTTCCTTTATAATAAACAATTTTTCCGTTAATCCTTATGC
cctttataaatatttttttctttctaaatttCAATATTTAGCCTAGTTCA
CTTACGTATGAAATTATAAtaataccgggtgtgccacagaGAAGCTagc Run BLAST on NCBI transcript from alignment at sc0000025:689329..691280+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003113 ID=TCONS_00003113|Name=TCONS_00003113|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at sc0000025:689329..691280+ (Clytia hemisphaerica)
CAACGTTGATTAGTAAAGCTTTCTCTTTTTAAGGTTCAAGGATGGATTTT
ACAATTATTCCATATTGGCGTTTTGATTTTCGTTTTCGGTTTCAAACTGG
TCGATCAACTTCATCTGCTACATTTGAACGTGGTATgcaataactttttt
attcattcttACAAGGTTTTGTAAGGAACTCGTTTTTATACCATTTGATA
TCTTGGGAAGTGGGACCAGTCACACACTTCATTGATATGCTTATGTGAAA
GTTGAAGAATCCTATATTTGAGAACCCTACCTGAACCATCCCTGTCTTTT
AAAGTCTCAATTTGTGTCAAAATCAGTGTAATTTGGATCTGAAGAACCAG
GTTCACCGAAACATAGGATATATTTTAAAACTCTAGTAAAGTAAGGTGAC
CATAGGaatatttgtttgattttagtGGGGTGAAGGATTCAATAAAAGAT
TCTATTCGGACATAGATTACATTACAAACTTTGGGAGTGCAGAAAAGCCT
cattaaaaactttttcgagtgaAGTTCTTAGTATGCTAGCCTCGAGTTTG
AGTTTCATCTCTTTTCTCTTTAATTTACATTATAGATAGCAGCATTCATT
GATTCAGTGTATCGTCTCTTTTTCCAAGTATATGATGTATACGATTGGCC
TCTACGAATGTTCCCTCTCAACGCCATCTTTGTTTGTGTTACGATTGCCA
ACAGTTACACGTTAGCTAAACATTTTACAAACCAGCGTGGTCGGAAATTA
ATCATCACCTTCCAGCTTGGTTCACAGTTGATGCTTGGAGCACCTACACT
ATATTTAACTTTCTATCTGCTTGTTCCATGGGTTGTCAAACTGGGACCTT
TTCAACAAGCACTCGTTGCCGGAGTGTCGCCCATCCTTGGTGCTATCACT
AAAGCAATAAGCCGGATCGCGATCCAGAACGACTCCAATATCAACCATCC
TGGGAAGTCTTATATGTTGGTTATTGTAGCTTACGCTGGTGCAGCTCTTG
TTTACCGAACCATTCAAGCAGAACTAGAATCGTCCGCCCTGTttcttttt
ctgtgttttgcACATGCCTTGATTGGATTCTTAGAGCGTTTATCAGTTGT
CCTTCGAGATCATTTTTACTTTTGGTTTTACAAGAAAGTTCTAAAGAAAG
AGCGTGATTATAACTCCTTTGTTGGTTCGTTTCGCACGCCGCGTACGCAA
AGATTAGTTGCCGATATCACCATTTGTAATATCATTCACGAGACCAATGC
GCTAATCTATACCAACGCGTTTGTTCAGTTTTACTCACTACAGATTGGGA
TTGATGGTCAAGAAAATGCTGTAGATGTCTATGgtgttgttttgaaattt
ttcatacGCTGCTTTTCCGCCATTTTGATTGAATATGTTTTCACAGCTTT
TGGAATTTTCATTCTTACCTGGTACATGAATATTCCCGTCATTCGTGTCT
GGCGGAAGAAATGGAAATCAATATTGGCAGGTAATCTATTCGTGTGTGCA
TGCTTGGTTCTTTATTCCACTCAATATTTGCTTGTGGTTGTGGCAAACCG
TTATCAACATACGATCCAATCAAAAAACGAAACGAACACTAGAGTTGACG
CTCTATAATCCGATTTCCAAGTGGAATTGAATttccatcgaataagggag
agtatcaaatagtagagcgtcgaattagagagcttcAACTGTACCTTGTA
GCTCCTGTAGATATAATGGTCCCCTAGCAAAAGGTGTACCCCcctatttt
tttagaaattcagTCATGTACAAAATAAGGTTGTAAAGCTAAATACTATT
TTAATGAGATAAATTTCCTTTATAATAAACAATTTTTCCGTTAATCCTTA
TGCcctttataaatatttttttctttctaaatttCAATATTTAGCCTAGT
TCACTTACGTATGAAATTATAAtaataccgggtgtgccacagaGAAGCTa
gc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003113-exon-sc0000025-1491911889:689329..689460 | TCONS_00003113-exon-sc0000025-1491911889:689329..689460 | Clytia hemisphaerica | exon |
| TCONS_00003113-exon-sc0000025-1510915933:689329..689460 | TCONS_00003113-exon-sc0000025-1510915933:689329..689460 | Clytia hemisphaerica | exon |
| TCONS_00003113-exon-sc0000025-1575043694:689329..689460 | TCONS_00003113-exon-sc0000025-1575043694:689329..689460 | Clytia hemisphaerica | exon |
| TCONS_00003113-exon-sc0000025-1491911889:689914..691280 | TCONS_00003113-exon-sc0000025-1491911889:689914..691280 | Clytia hemisphaerica | exon |
| TCONS_00003113-exon-sc0000025-1510915933:689914..691280 | TCONS_00003113-exon-sc0000025-1510915933:689914..691280 | Clytia hemisphaerica | exon |
| TCONS_00003113-exon-sc0000025-1575043694:689914..691280 | TCONS_00003113-exon-sc0000025-1575043694:689914..691280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:689329..691280 + |
Blast
The following BLAST results are available for this feature:
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