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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003105 ID=TCONS_00003105|Name=TCONS_00003105|organism=Clytia hemisphaerica|type=transcript|length=1926bpRun BLAST on NCBI protein sequence of TCONS_00003105-protein >TCONS_00003105-protein ID=TCONS_00003105-protein|Name=TCONS_00003105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp RFFLMCYGFVNFACTLQSLLNLPNWRPRFKFYHWGLSLLGMFLCLALMFIRun BLAST on NCBI transcript from alignment at sc0000025:414612..426574+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003105 ID=TCONS_00003105|Name=TCONS_00003105|organism=Clytia hemisphaerica|type=transcript|length=11963bp|location=Sequence derived from alignment at sc0000025:414612..426574+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000025:414612..426574+ >TCONS_00003105 ID=TCONS_00003105|Name=TCONS_00003105|organism=Clytia hemisphaerica|type=CDS|length=19890bp|location=Sequence derived from alignment at sc0000025:414612..426574+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003105 vs. Swiss-Prot (Human)
Match: S12A6 (Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2) HSP 1 Score: 518.464 bits (1334), Expect = 1.759e-169 Identity = 267/515 (51.84%), Postives = 361/515 (70.10%), Query Frame = 2
Query: 5 FFLMCYGFVNFACTLQSLLNLPNWRPRFKFYHWGLSLLGMFLCLALMFISSWYYALVAIFIAGFLYKYIEYRGAEKEWGDGLSGLSLSAARFGLLRMEGSTQTHTKNWRPQLLVLIDPPAGGVVLNQKSKKLITLASQMKAGRGLTIVGAVIEGDYLKTSVEVDEYEEEIAAVMKKEKVKGFSSCVASSKSLDGLSYLIQSAGLGALKPNTVILSWPHDWKNTSN---WRSFIHSVRVVSEMRRAVIVAKEPEKFP-DLTSRESGYLDIWWIVQDGGLMLLMTFLLKQHKVWKKCNLRLFTVAQITDNSIQIKNDLVQLMYNLRLTAEVHVIEMQDSDISAYTYERTLQAEQRXXXXXXXXXXXXXXXXXAQTIFDKGHXXXXXXXXXXXXVASTGADAS-GGGVVENRLATQSSVEESDGELGESAGSVQLMR--LKSRPDEGNVRRMDTAVKINRLVQEKSSGSRLIMINLPKPPTIDEREFIYMEFIEALIEGLDQVFLVRGGGHEVVTIYS 1528
FFLMCY FVN AC LQ+LL PNWRPRF++YHW LS +GM +CLALMFISSWYYA+VA+ IAG +YKYIEY+GAEKEWGDG+ GLSLSAARF LLR+E HTKNWRPQLLVL+ L+ K +L+T ASQ+KAG+GLTIVG+VI G++L+ E E+ I +M+ EKVKGF V ++K +G+S+LIQS GLG +K NTV++ WP+ W+ + + W++FI +VRV + A++VAK FP ++ G +D+WWIV DGG+++L+ FLLKQHKVW+KC++R+FTVAQ+ DNSIQ+K DL +Y+LR+ AEV V+EM DSDISAYTYERTL EQR +ML M+LSK + +EAQ + D+ + + S G+D + ++ + ++ G+ A S++ + L RPD+ NVRRM TAVK+N ++ KS ++L+++N+P PP E + YMEF+E L EGL++V LVRGGG EV+TIYS
Sbjct: 649 FFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLE-EGPPHTKNWRPQLLVLLKLDED---LHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFCQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRN---------SMLRLTSIGSDEDEETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS 1150 The following BLAST results are available for this feature:
BLAST of TCONS_00003105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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