TCONS_00003102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003102
Unique NameTCONS_00003102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003102 ID=TCONS_00003102|Name=TCONS_00003102|organism=Clytia hemisphaerica|type=transcript|length=583bp
GATACCCAGAAATTGCCACAAAACTGTGGACCAGGGCGGGCTGAAATTTT
GTTATTGTAATTATcgatgaaaaacattttcttgatcGAGCACTcaatat
taagaacaattaaATCAAGTTATGAACAATGGCATCAGTTCCAGTTCATC
CAGATTCACCATCACCAAACCATTTCAAAAGTCACAAGATTCTGGCACTA
AAGAGGATGTCAAATTAGagcttttagaaaatcaaaatacTGGCTCCTTG
GATCAGATTGATCTCGGTTTTGACAAGAATGCAAGTCCAACTGGTGATGA
CCAGCATGTCTTGGCCCTCTACTCGGAGGACATACATCTCAAAGGAGGga
gatttcaaagttttttacaaaatgtcACTGCATATACTGCAACAATTCCA
CCAGCTAATGACTCAGAAGCACAACCAAAGCAAGAGGTAGCAAAACTTGG
AACCTTGGTTGGCGTGTATTTACCCTGTATTCAAAACATCCTTGGTGTTA
TTCTTTTTATTCGATTATCGTGGATAGTTGGAACAGCTGGAGTGTTGCAA
AGCTTTTCCATTGTGctgatttgttgttgttgt
Run BLAST on NCBI

protein sequence of TCONS_00003102-protein

>TCONS_00003102-protein ID=TCONS_00003102-protein|Name=TCONS_00003102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MNNGISSSSSRFTITKPFQKSQDSGTKEDVKLELLENQNTGSLDQIDLGF
DKNASPTGDDQHVLALYSEDIHLKGGRFQSFLQNVTAYTATIPPANDSEA
QPKQEVAKLGTLVGVYLPCIQNILGVILFIRLSWIVGTAGVLQSFSIVLI
CCCC
Run BLAST on NCBI

transcript from alignment at sc0000025:340419..341650+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003102 ID=TCONS_00003102|Name=TCONS_00003102|organism=Clytia hemisphaerica|type=transcript|length=1232bp|location=Sequence derived from alignment at sc0000025:340419..341650+ (Clytia hemisphaerica)
GATACCCAGAAATTGCCACAAAACTGTGGACCAGGGCGGGCTGAAATTTT
GTTATTGTAATTATcgatgaaaaacattttcttgatcGAGCACTcaatat
taagaacaattaaATCAAGTTATGAACAATGGCATCAGTTCCAGTTCATC
CAGATTCACCATCACCAAACCATTTCAAAAGTCACAAGATTCTGGCACTA
AAGAGGATGTCAAATTAGagcttttagaaaatcaaaatacTGGCTCCTTG
GATCAGATTGATCTCGGTAAGATTGAGTAATTGATTTTTTCTCTGTATAT
AGCACAAAATAGATACAGAGAGAGATTACTTTCTCTCATAGTCATAGTTt
tgaatttatgcaaaattcttggaaattatTTTGGAGTGAAAGCGCTATAA
ACTCtataattttggtgaaaattgtCTTTCACAGAGTCTTTTTAAACAGC
TAAAATTATAGCAAAATTTAAATCCTTATAGAATATAAACTCCTAAaaca
aaaagttattaaaaatttagtcaaatgaaataaaattgctGAATGgtatt
aaaaattaaatttcatttgtctataCAAACAGGTTTTGACAAGAATGCAA
GTCCAACTGGTGATGACCAGCATGTCTTGGCCCTCTACTCGGTATGTCCG
TATCTAAGAACTTATACCCAAATATttacatttataaaaaaatattgaaa
ctgaGAAGTCATTTACTCACATATAGTGTGCCAAATAAAGTAATTAGACT
AAAAATCTTGCAACTATTGTTCAAGCACtttgtgatttttcttttatttt
caatctatCATGATATTTATAGGAGGACATACATCTCAAAGGAGGgagat
ttcaaagttttttacaaaatgtcACTGCATATACTGCAACAATTCCACCA
GCTAATGACTCAGAAGCACAACCAAAGCAAGAGGTAAAGTAAAGTTCAGA
AACTCACgtttattaatattttttatcgaaattcatttaaaaatttcata
aatgatACCGATTGCGTTTTacttttaatcgacagattcaGGACTGATTC
ACTTTTTATTTAACgtatcatttttcttttatcagGTAGCAAAACTTGGA
ACCTTGGTTGGCGTGTATTTACCCTGTATTCAAAACATCCTTGGTGTTAT
TCTTTTTATTCGATTATCGTGGATAGTTGGAACAGCTGGAGTGTTGCAAA
GCTTTTCCATTGTGctgatttgttgttgttgt

Coding sequence (CDS) from alignment at sc0000025:340419..341650+

>TCONS_00003102 ID=TCONS_00003102|Name=TCONS_00003102|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at sc0000025:340419..341650+ (Clytia hemisphaerica)
ATGAACAATGGCATCAGTTCCAGTTCATCCAGATTCACCATCACCAAACC
ATTTCAAAAGTCACAAGATTCTGGCACTAAAGAGGATGTCAAATTAGagc
ttttagaaaatcaaaatacTGGCTCCTTGGATCAGATTGATCTCGGTTTT
GACAAGAATGCAAGTCCAACTGGTGATGACCAGCATGTCTTGGCCCTCTA
CTCGGAGGACATACATCTCAAAGGAGGgagatttcaaagttttttacaaa
atgtcACTGCATATACTGCAACAATTCCACCAGCTAATGACTCAGAAGCA
CAACCAAAGCAAGAGGTAGCAAAACTTGGAACCTTGGTTGGCGTGTATTT
ACCCTGTATTCAAAACATCCTTGGTGTTATTCTTTTTATTCGATTATCGT
GGATAGTTGGAACAGCTGGAGTGTTGCAAAGCTTTTCCATTGTGctgatt
tgttgttgttgtATGAACAATGGCATCAGTTCCAGTTCATCCAGATTCAC
CATCACCAAACCATTTCAAAAGTCACAAGATTCTGGCACTAAAGAGGATG
TCAAATTAGagcttttagaaaatcaaaatacTGGCTCCTTGGATCAGATT
GATCTCGGTTTTGACAAGAATGCAAGTCCAACTGGTGATGACCAGCATGT
CTTGGCCCTCTACTCGGAGGACATACATCTCAAAGGAGGgagatttcaaa
gttttttacaaaatgtcACTGCATATACTGCAACAATTCCACCAGCTAAT
GACTCAGAAGCACAACCAAAGCAAGAGGTAGCAAAACTTGGAACCTTGGT
TGGCGTGTATTTACCCTGTATTCAAAACATCCTTGGTGTTATTCTTTTTA
TTCGATTATCGTGGATAGTTGGAACAGCTGGAGTGTTGCAAAGCTTTTCC
ATTGTGctgatttgttgttgttgtATGAACAATGGCATCAGTTCCAGTTC
ATCCAGATTCACCATCACCAAACCATTTCAAAAGTCACAAGATTCTGGCA
CTAAAGAGGATGTCAAATTAGagcttttagaaaatcaaaatacTGGCTCC
TTGGATCAGATTGATCTCGGTTTTGACAAGAATGCAAGTCCAACTGGTGA
TGACCAGCATGTCTTGGCCCTCTACTCGGAGGACATACATCTCAAAGGAG
GgagatttcaaagttttttacaaaatgtcACTGCATATACTGCAACAATT
CCACCAGCTAATGACTCAGAAGCACAACCAAAGCAAGAGGTAGCAAAACT
TGGAACCTTGGTTGGCGTGTATTTACCCTGTATTCAAAACATCCTTGGTG
TTATTCTTTTTATTCGATTATCGTGGATAGTTGGAACAGCTGGAGTGTTG
CAAAGCTTTTCCATTGTGctgatttgttgttgttgtATGAACAATGGCAT
CAGTTCCAGTTCATCCAGATTCACCATCACCAAACCATTTCAAAAGTCAC
AAGATTCTGGCACTAAAGAGGATGTCAAATTAGagcttttagaaaatcaa
aatacTGGCTCCTTGGATCAGATTGATCTCGGTTTTGACAAGAATGCAAG
TCCAACTGGTGATGACCAGCATGTCTTGGCCCTCTACTCGGAGGACATAC
ATCTCAAAGGAGGgagatttcaaagttttttacaaaatgtcACTGCATAT
ACTGCAACAATTCCACCAGCTAATGACTCAGAAGCACAACCAAAGCAAGA
GGTAGCAAAACTTGGAACCTTGGTTGGCGTGTATTTACCCTGTATTCAAA
ACATCCTTGGTGTTATTCTTTTTATTCGATTATCGTGGATAGTTGGAACA
GCTGGAGTGTTGCAAAGCTTTTCCATTGTGctgatttgttgttgttgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001722XLOC_001722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003102-exon-sc0000025-1491911889:340419..340684TCONS_00003102-exon-sc0000025-1491911889:340419..340684Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1510915933:340419..340684TCONS_00003102-exon-sc0000025-1510915933:340419..340684Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1575043694:340419..340684TCONS_00003102-exon-sc0000025-1575043694:340419..340684Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1491911889:341001..341059TCONS_00003102-exon-sc0000025-1491911889:341001..341059Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1510915933:341001..341059TCONS_00003102-exon-sc0000025-1510915933:341001..341059Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1575043694:341001..341059TCONS_00003102-exon-sc0000025-1575043694:341001..341059Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1491911889:341241..341351TCONS_00003102-exon-sc0000025-1491911889:341241..341351Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1510915933:341241..341351TCONS_00003102-exon-sc0000025-1510915933:341241..341351Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1575043694:341241..341351TCONS_00003102-exon-sc0000025-1575043694:341241..341351Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1491911889:341504..341650TCONS_00003102-exon-sc0000025-1491911889:341504..341650Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1510915933:341504..341650TCONS_00003102-exon-sc0000025-1510915933:341504..341650Clytia hemisphaericaexon
TCONS_00003102-exon-sc0000025-1575043694:341504..341650TCONS_00003102-exon-sc0000025-1575043694:341504..341650Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003102-proteinTCONS_00003102-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:340419..341650 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.83787	3.42264	2.79255	1.89143	3.96566	1.6174	6.70768	6.508	5.91533	7.62414	5.47805	4.99094	3.78532	3.93109	2.31619	2.94806	5.6969	4.45234	4.73941	5.6981	5.0444	3.89203	2.1753	3.46091	28.4154	23.9057	2.47137	1.6658	0.8423	0.214543
Blast
[Close]
BLAST of TCONS_00003102 vs. Swiss-Prot (Human)
Match: S12A6 (Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.669e-24
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 2 
Query:  149 SRFTITKPFQKSQDSGTKEDVKLELLENQNTGSLDQIDLGFDKNASPTGDDQHVLALYSEDIHLKGGRFQSFLQNVTAYTATIPPANDSE--------AQPKQEVAKLGTLVGVYLPCIQNILGVILFIRLSWIVGTAGVLQSFSIVLICCCC 583
            S+ +IT    +  D G K+     L    N  + ++ D  FDKN          LAL+ E++  +  +  S L  +  YT     A + E         +   +  ++GT +GVYLPC+QNI GVILF+RL+W+VGTAGVLQ+F+IVLICCCC
Sbjct:   93 SQNSITGEHSQLLDDGHKKARNAYL----NNSNYEEGDEYFDKN----------LALFEEEMDTRP-KVSSLLNRMANYTNLTQGAKEHEEAENITEGKKKPTKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVLQAFAIVLICCCC 230
The following BLAST results are available for this feature:
BLAST of TCONS_00003102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S12A64.669e-2438.56Solute carrier family 12 member 6 OS=Homo sapiens ... [more]
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