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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003097 ID=TCONS_00003097|Name=TCONS_00003097|organism=Clytia hemisphaerica|type=transcript|length=1566bp
CGCGAATCTTGAATATGTCAGTTGgatttctttgACAAATCTCCAAAAAA
ATGGCCAAACGTTATAAAGAAATGGATCCATCAAAGCAACAAAAATGCGG
ACCTATCGTCACAACCAATTTCACAGTGTTTTGGATATGTTTATGTTTCA
TAATGGAGCTGGTTGCCTTGGGAACGAATAAATGGTACGTGAGACAAGAT
AAAGAAATCAAGTTTTGGCATGGTGGACTTTGGAATCAATGTCTTGGTGA
AATTGATCGCACTTTCTGTTCTTACATCAGAGATACTCCAGCGTGGTTGA
AAGCCACTCAATCCATGTTACTGATCGCTCTCTTCTCCATGTTTATTAAC
ATCATTTACATCATGGTTGGTATCGCAAGAAAATCGTTGAGAGTCAGTGT
CATGCTTGGAATGACCAATTTCACGAcTTTCTTCTTTCTACTGGGAGTGA
TCATCTACACAgccaaaggattttcagacaTCATTAGCCCAAGTACCACA
TATTACGTAGCCTGGATCACAGTAGTGTTCCATGTCATAGCGGCTATCTT
ATGTGTCATCTCCTTTATGAGAGTATCCAAACTATCGAAAAAGAAATCGG
TAGATTCGGGGATCAGAATCTAAAAATGGTATTCGAATGGTGTAACATCA
ACTGCTTTGCGAAAGATACCTCAATGATGTGAGGATATTTGGTATATATC
ATGGTATCTAGAAAAGAAAACAGCAAATGTAGCAGGATGCTATTGTTTTT
AGATCCCTGGATTACTCTGTGATATGTTATTTATGCTTCACTTGCAGTTA
TATGAAGTAGCAGTAAGTGGAAAAGTCGGTGAgaataatttgaaagaatt
gGAAATGACGCAACATCAgcgaaaatttcaaagaaatgatTCTGCAAGTC
GATATCAATATGTGACAAAAATTAAATGTGCATATACAACTGACACACGC
AAATGGTTGTTTTTATGTTGATGTAGTAGGTGAAGTTCTTACACCAAAAA
GAACCCTATAATGCCATGTGCTGGTTTCATGATATGtaccattacaatgt
cttccacgaacccaacagctggttggttgtaagtgacgtattgactgatt
gtaCGTCAactgcaaccaatcagctgttgggtccgcgATGTAATGCCAGA
AGTCAtcgcaatggtgcatatcatgaattaaagaCAAATCTAGATGATAC
AAAGCAACATACATTGAAAAAGGAGTTGATTAAATTTGAGGGTTCCTGAC
GCTATTCAATTTCAAGGAACGCTAAAAAAAAGCTTACATGATATTCGCAA
AACCTGAAAATGTTGCTGTTCTTACTCAACTTTCTAACTTATATTAAATC
TTTGAATCCTGAATCAGGAATCCCTTTAATACTTTTATAAAGATATTTTG
TCAAACTATTTATATCTTGAGATTAGGACGTGGTAGACAGAAATAACTGA
ACGAATTTATAAAAAATGCTGACTTGACACTGAATTTTTTACACATACAT
GATGAGGTTTCATGTATGAATAATTTCAGCTTCGTTAAATCTTCGTTAAG
TCTAATTGCTTCCTTG Run BLAST on NCBI protein sequence of TCONS_00003097-protein >TCONS_00003097-protein ID=TCONS_00003097-protein|Name=TCONS_00003097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MAKRYKEMDPSKQQKCGPIVTTNFTVFWICLCFIMELVALGTNKWYVRQD
KEIKFWHGGLWNQCLGEIDRTFCSYIRDTPAWLKATQSMLLIALFSMFIN
IIYIMVGIARKSLRVSVMLGMTNFTTFFFLLGVIIYTAKGFSDIISPSTT
YYVAWITVVFHVIAAILCVISFMRVSKLSKKKSVDSGIRI Run BLAST on NCBI transcript from alignment at sc0000025:269349..273130+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003097 ID=TCONS_00003097|Name=TCONS_00003097|organism=Clytia hemisphaerica|type=transcript|length=3782bp|location=Sequence derived from alignment at sc0000025:269349..273130+ (Clytia hemisphaerica)
CGCGAATCTTGAATATGTCAGTTGGTTGGtccattttttaatattttttg
ggACATTATTcttgaccaaattttgactttatAAATAATAACGAGGAAAA
ATGCATATAATTTTGTTCCCAGCATGATGTAATCCAATTTAGTAGTCTAG
TTGTTTCGAAGTAAAATTCTACGACAGTCTTTACTACAATATTTCCATAA
TGTCCAAAGTTAGATCAAcgttagtctagcaagctagacgactaattcag
gcatagtagaaataaagcaaaaagtaatggagggaacaaagtaatcccgt
aacaataatcgtattatcatatgtATAACGCCtatatactactgtattac
acgcattatgaaCGACTGCCGTCTAGATCAACGGTCCAACGAGTATGGAA
AGTCGAGTTTTTGCTCGTATGTTTTCATAGAATTTTTGCAACAAGGAAAA
AGGCTTTAAAGTTAAATCGTGTCTCCAAGTCtatacttttctttttaact
GGACACAATGTCAATATTGTATCAAAGAGTAAATCTTAGTCTATTATGGT
CCAGGCTTTTTATCAGGCCAGCAAGatctggagaaaaaaaatccccaGGG
GCACTCATATActccgacccacggcatgtgtctttaagggtaggtttttt
aagcccctcgaaatgcactgtaagggtgtacttttgatagcgTGCAATAA
AAGGGTATTCTTTTAGCTGAATACACTGAAAGGGTGTGTTTAGGGACTGT
TGAATTGCAAGTCTGATAGTAAAAATCTAATGTATCTTTAGTAGTTTTGA
CTCGCACCTATTTTGATTTGCTTTGCACATTCTATCtacatctcaggctc
attttcaggtggTTTCAGTTAAGCAAAGATATagactacactgtaagggt
cagaaacgttcggGAAAATGCGCTGTAAGGGTGCCTTCTCACTTCTCCAG
GGctgtactgtaagggtacgattttgaaagctattttttgGCGGtacatg
ccgtcgtttagagTGCCCCCCCTGGGTGAAATTTAATGGTAATGATTATT
TCTTTATTTGTTATTACgcataaataggatttctttgACAAATCTCCAAA
AAAATGGCCAAACGTTATAAAGAAATGGATCCATCAAAGCAACAAAAATG
CGGACCTATCGTCACAACCAATTTCACAGTGTTTTGGATATGTTTATGTT
TCATAATGGAGCTGGTTGCCTTGGGAACGAATAAATGGTACGTGAGACAA
GATAAAGAAATCAAGTTTTGGCATGGTGGACTTTGGAATCAATGTCTTGG
TGAAATTGATCGCACTTTCTGTTCTTACATCAGAGATACTCCAGGTatat
tcttttttaaaagaaaagtcaatttttgatgacgctcggctgttcttatt
gtTTTTGGCACTgtgagcctaaaattgttctcgCCCTGTTCTTATTTCTA
GGGCAAAACTGAGGTTCCCTACATATTTCACTAATTTGACCCTTAATTTG
CTTAAAATTCATGCATTCCAACATTGTTCGTAGTTTTTTTTTCCAGTCTT
TTTTAGcctaatttttcttataaaattgttcttatatatataTTATTCCA
ATAGTATATTGGATgactaaaatctcaaaattgttcggttttttaattaa
tttcagCGTGGTTGAAAGCCACTCAATCCATGTTACTGATCGCTCTCTTC
TCCATGTTTATTAACATCATTTACATCATGGTTGGTATCGCAAGAAAATC
GTTGAGAGTCAGTGTCATGCTTGGAATGACCAATTTCACGAGTAAGTCCT
CCTAGTATTTAAAGAATCTCCTGTTCAATGTGGAAGAAAATTGACTCCTC
ATCCAGTGGTAGATCTGAGGGAATtctaaattaatatttttttagtcATA
CTCCTAATAAGGAAACAAAGGCTCTGCCCTTCGTAAATTTTGAACCCCCT
CAAACTCGCCACTGCCGCATCTCTCATAGACTTACTGCAGGGAGATCTTT
CAGATCATTGAACTCATCGAAGATGAAAATagacatttcaaaatttgacc
tAAATTTAGGAGGAGAGTTTAACTTTCAGAACTCAATTTGAATACCGTTT
CTTTAGGTTTCTTTACCTTTTCTGTTCCATATGGATGATAATGTGCCCCA
CATTTCTCTCTCAGACTTGCTACAGGAAGATCTTTCAGATAATTTAGGTG
ATCGAAGATGAAGATATAAGTTTCAAATCTTGATATTAATTTAGGAGGAA
AGGTTTACTCTTACTTTTGAAGTCGGCTAAAAATTGGTATTTGAATTGGT
TGCATAAGATCTTACATGACGAAGGCTAAGATCTAACTTACAAGCCTAAG
ATCTAACTTACAAGCCTAAggaacaatacaccttttcgaccgtagccacc
aattgccgcacattttaccaccctaaaaccgtcccagttttttttttcgc
acctaaagacaatagaaaaagtgtaaaaaaaggattggatcaagtttagg
gtggtaaattaaataataaagtggcacacACGTTTGACCACGCAACTACG
ATCGAAAATGTGTATTCAAAAGTCATTGTGCAACTTATTACTTTCCACTG
CGTTTCTAATGTTAATTGATgaccttttctttttccttttagcTTTCTTC
TTTCTACTGGGAGTGATCATCTACACAgccaaaggattttcagacaTCAT
TAGCCCAAGTACCACATATTACGTAGCCTGGATCACAGTAGTGTTCCATG
TCATAGCGGCTATCTTATGTGTCATCTCCTTTATGAGAGTATCCAAACTA
TCGAAAAAGAAATCGGTAGATTCGGGGATCAGAATCTAAAAATGGTATTC
GAATGGTGTAACATCAACTGCTTTGCGAAAGATACCTCAATGATGTGAGG
ATATTTGGTATATATCATGGTATCTAGAAAAGAAAACAGCAAATGTAGCA
GGATGCTATTGTTTTTAGATCCCTGGATTACTCTGTGATATGTTATTTAT
GCTTCACTTGCAGTTATATGAAGTAGCAGTAAGTGGAAAAGTCGGTGAga
ataatttgaaagaattgGAAATGACGCAACATCAgcgaaaatttcaaaga
aatgatTCTGCAAGTCGATATCAATATGTGACAAAAATTAAATGTGCATA
TACAACTGACACACGCAAATGGTTGTTTTTATGTTGATGTAGTAGGTGAA
GTTCTTACACCAAAAAGAACCCTATAATGCCATGTGCTGGTTTCATGATA
TGtaccattacaatgtcttccacgaacccaacagctggttggttgtaagt
gacgtattgactgattgtaCGTCAactgcaaccaatcagctgttgggtcc
gcgATGTAATGCCAGAAGTCAtcgcaatggtgcatatcatgaattaaaga
CAAATCTAGATGATACAAAGCAACATACATTGAAAAAGGAGTTGATTAAA
TTTGAGGGTTCCTGACGCTATTCAATTTCAAGGAACGCTAAAAAAAAGCT
TACATGATATTCGCAAAACCTGAAAATGTTGCTGTTCTTACTCAACTTTC
TAACTTATATTAAATCTTTGAATCCTGAATCAGGAATCCCTTTAATACTT
TTATAAAGATATTTTGTCAAACTATTTATATCTTGAGATTAGGACGTGGT
AGACAGAAATAACTGAACGAATTTATAAAAAATGCTGACTTGACACTGAA
TTTTTTACACATACATGATGAGGTTTCATGTATGAATAATTTCAGCTTCG
TTAAATCTTCGTTAAGTCTAATTGCTTCCTTG Coding sequence (CDS) from alignment at sc0000025:269349..273130+ >TCONS_00003097 ID=TCONS_00003097|Name=TCONS_00003097|organism=Clytia hemisphaerica|type=CDS|length=1719bp|location=Sequence derived from alignment at sc0000025:269349..273130+ (Clytia hemisphaerica)
ATGGCCAAACGTTATAAAGAAATGGATCCATCAAAGCAACAAAAATGCGG
ACCTATCGTCACAACCAATTTCACAGTGTTTTGGATATGTTTATGTTTCA
TAATGGAGCTGGTTGCCTTGGGAACGAATAAATGGTACGTGAGACAAGAT
AAAGAAATCAAGTTTTGGCATGGTGGACTTTGGAATCAATGTCTTGGTGA
AATTGATCGCACTTTCTGTTCTTACATCAGAGATACTCCAGCGTGGTTGA
AAGCCACTCAATCCATGTTACTGATCGCTCTCTTCTCCATGTTTATTAAC
ATCATTTACATCATGGTTGGTATCGCAAGAAAATCGTTGAGAGTCAGTGT
CATGCTTGGAATGACCAATTTCACGAcTTTCTTCTTTCTACTGGGAGTGA
TCATCTACACAgccaaaggattttcagacaTCATTAGCCCAAGTACCACA
TATTACGTAGCCTGGATCACAGTAGTGTTCCATGTCATAGCGGCTATCTT
ATGTGTCATCTCCTTTATGAGAGTATCCAAACTATCGAAAAAGAAATCGG
TAGATTCGGGGATCAGAATCTAAATGGCCAAACGTTATAAAGAAATGGAT
CCATCAAAGCAACAAAAATGCGGACCTATCGTCACAACCAATTTCACAGT
GTTTTGGATATGTTTATGTTTCATAATGGAGCTGGTTGCCTTGGGAACGA
ATAAATGGTACGTGAGACAAGATAAAGAAATCAAGTTTTGGCATGGTGGA
CTTTGGAATCAATGTCTTGGTGAAATTGATCGCACTTTCTGTTCTTACAT
CAGAGATACTCCAGCGTGGTTGAAAGCCACTCAATCCATGTTACTGATCG
CTCTCTTCTCCATGTTTATTAACATCATTTACATCATGGTTGGTATCGCA
AGAAAATCGTTGAGAGTCAGTGTCATGCTTGGAATGACCAATTTCACGAc
TTTCTTCTTTCTACTGGGAGTGATCATCTACACAgccaaaggattttcag
acaTCATTAGCCCAAGTACCACATATTACGTAGCCTGGATCACAGTAGTG
TTCCATGTCATAGCGGCTATCTTATGTGTCATCTCCTTTATGAGAGTATC
CAAACTATCGAAAAAGAAATCGGTAGATTCGGGGATCAGAATCTAAATGG
CCAAACGTTATAAAGAAATGGATCCATCAAAGCAACAAAAATGCGGACCT
ATCGTCACAACCAATTTCACAGTGTTTTGGATATGTTTATGTTTCATAAT
GGAGCTGGTTGCCTTGGGAACGAATAAATGGTACGTGAGACAAGATAAAG
AAATCAAGTTTTGGCATGGTGGACTTTGGAATCAATGTCTTGGTGAAATT
GATCGCACTTTCTGTTCTTACATCAGAGATACTCCAGCGTGGTTGAAAGC
CACTCAATCCATGTTACTGATCGCTCTCTTCTCCATGTTTATTAACATCA
TTTACATCATGGTTGGTATCGCAAGAAAATCGTTGAGAGTCAGTGTCATG
CTTGGAATGACCAATTTCACGAcTTTCTTCTTTCTACTGGGAGTGATCAT
CTACACAgccaaaggattttcagacaTCATTAGCCCAAGTACCACATATT
ACGTAGCCTGGATCACAGTAGTGTTCCATGTCATAGCGGCTATCTTATGT
GTCATCTCCTTTATGAGAGTATCCAAACTATCGAAAAAGAAATCGGTAGA
TTCGGGGATCAGAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003097-exon-sc0000025-1491911889:269349..269372 | TCONS_00003097-exon-sc0000025-1491911889:269349..269372 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1510915933:269349..269372 | TCONS_00003097-exon-sc0000025-1510915933:269349..269372 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1575043694:269349..269372 | TCONS_00003097-exon-sc0000025-1575043694:269349..269372 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1491911889:270426..270692 | TCONS_00003097-exon-sc0000025-1491911889:270426..270692 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1510915933:270426..270692 | TCONS_00003097-exon-sc0000025-1510915933:270426..270692 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1575043694:270426..270692 | TCONS_00003097-exon-sc0000025-1575043694:270426..270692 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1491911889:271005..271139 | TCONS_00003097-exon-sc0000025-1491911889:271005..271139 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1510915933:271005..271139 | TCONS_00003097-exon-sc0000025-1510915933:271005..271139 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1575043694:271005..271139 | TCONS_00003097-exon-sc0000025-1575043694:271005..271139 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1491911889:271991..273130 | TCONS_00003097-exon-sc0000025-1491911889:271991..273130 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1510915933:271991..273130 | TCONS_00003097-exon-sc0000025-1510915933:271991..273130 | Clytia hemisphaerica | exon |
| TCONS_00003097-exon-sc0000025-1575043694:271991..273130 | TCONS_00003097-exon-sc0000025-1575043694:271991..273130 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:269349..273130 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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