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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003095 ID=TCONS_00003095|Name=TCONS_00003095|organism=Clytia hemisphaerica|type=transcript|length=1445bp
AGAATCTCCAAACCTACGTTTTAGGTACAGTAGAATTTTTGAATAGAGAA
TATTCGCCAAATCTTCTCACCATTGACCATCATCCTCACTATGAAAAATT
GCAGTTTTCAATCATGGAAACTTTTTATGTCCGATGATAACGAAACCGAT
CAATTCCTCGAAGAAAGTCGAGATATATCGAATGAACTCGATTCACACGG
AAGTTTCACAAACTTCTTCGCCATACCACTCAGTCTCTTTATCGCTATAC
CAAACCTCTTACTCATTTGGGGAATCCGAAAAACGAACCCTAACAAAATC
AACATGGCTAAAAGACTATTCATCTATCGTTCCTTAACCGATTTACTGAT
CGGTGTGGTCGGGATACCGTATTTCGGACTCGCTTCTCTGCTGAACCAAC
CTTGTATACACATCTCGATCGCAAATTGTATTGGTGTCTTCTCGATCATT
ATCGGAACATTAACAATCAGCACCATTAGCTTGTTAAGACTCATATCCCT
AATCAAACCTTTCTATAAAGTTCACCAACACTGGCTTGCAATAGCTCTTT
TACTACAATTCACAGTCGCGGTATTTTTCTGTACTTTCAACTATCTAGTC
AACAACACAGTTATCGAATTGTATCCGCTACAGTGTGTTTTAAACGGCTT
AACAATCATTCTACATATATTATTCGCTACCGTTTTCAATCTGTTATCAA
TGTTCACTATTGAGCGACAAAAAATCGGTCCGCAACATTCAGTTTCCGGT
AAAGCAGCATTACATCGGAACACGAAAGCTATCCGGCGTCTTTTCCGTGT
CACAACTGTAATGGCTATTTGTTATTTACCGTCAGCTATAACGTATGTTT
ATTTCGGTGGACTGTTACTTAACGGGCGTATCAAAGCTGACGTATTCGCG
TTTTTGTATGACGTGGTGGATTTTGTTTTCATACCAGTCATGATTTGTCC
TGCGATAGCTGCTATTGTTTATATCGTATGGAACAGACAGATTGTCAATT
ATTATAAgaaagttttgttttgcaaATCGAAGAAAAAGACTGATATTATA
GAGCTAGGTTCACATGGATGATAAGAAATCATTGTTTTCCTGAGATTCCC
AGCAATTACCAGCTTTTTTTCTCGCAAAATGCTTCTGGTAATTTGATTGT
CATTGAAAAACACTTCATTTACCATAGTTTTACAGTACAGTCTTCTTCAT
GACTCGAACGACAAAGAGGGAGGGCGAAATCGTGCAAGTCAAGGagagat
tcgagtaatttttaCGATTTAAAACGATGAAATGCTTGAGTATTTTTAAA
ACCTTGTTTTTCATATGATTTTAAGTGGTCTATCAACCGATCTCTTAGGC
TCAGGTGCTCTCTGTCAATATAGTCCCAGAAAGACTGGCTTTCTCTCTCA
AATAATTAATTATCAGATCATTTAAGTCCCgtaaaattatccaaa Run BLAST on NCBI protein sequence of TCONS_00003095-protein >TCONS_00003095-protein ID=TCONS_00003095-protein|Name=TCONS_00003095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MKNCSFQSWKLFMSDDNETDQFLEESRDISNELDSHGSFTNFFAIPLSLF
IAIPNLLLIWGIRKTNPNKINMAKRLFIYRSLTDLLIGVVGIPYFGLASL
LNQPCIHISIANCIGVFSIIIGTLTISTISLLRLISLIKPFYKVHQHWLA
IALLLQFTVAVFFCTFNYLVNNTVIELYPLQCVLNGLTIILHILFATVFN
LLSMFTIERQKIGPQHSVSGKAALHRNTKAIRRLFRVTTVMAICYLPSAI
TYVYFGGLLLNGRIKADVFAFLYDVVDFVFIPVMICPAIAAIVYIVWNRQ
IVNYYKKVLFCKSKKKTDIIELGSHG Run BLAST on NCBI transcript from alignment at sc0000025:257768..259668+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003095 ID=TCONS_00003095|Name=TCONS_00003095|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at sc0000025:257768..259668+ (Clytia hemisphaerica)
AGAATCTCCAAACCTACGTTTTAGGTAAATATTTAGTCTCTTATAATTCT
ATGTATAATATGCGCTTGGAAATTGATAAATGATATTATAAGGGTACTAA
CCTTATCAGGCTTGGAACATTTGCTTCATATACACGTTAGCTTATTTGGT
GTAGTATTTTTGAAGTCGAACCAATCACAGTGGATCTTGTGCAAATATCA
GCCCTTTTACCACTATGAATATGATTTGCTTTGAATTTACATGTATCAAA
TGACGGCCAATGTTCGAAGACAGCGGGGCGTTGTCAATAAGTAATGATCT
TCTCTCTTTTGACTGGAAGTTTTTTGGTTCTAGCTCCACTCAAACTGGTC
AGATAATAGTGAGGTAACCATCCATTTCGCTAGTTGCCCCGGGTGACGGT
CGGTGTGACGAGTAATTTGTAGTCAGTTATGCcttattttcataatttcg
tttcattttcgtattttccttattttttagGTACAGTAGAATTTTTGAAT
AGAGAATATTCGCCAAATCTTCTCACCATTGACCATCATCCTCACTATGA
AAAATTGCAGTTTTCAATCATGGAAACTTTTTATGTCCGATGATAACGAA
ACCGATCAATTCCTCGAAGAAAGTCGAGATATATCGAATGAACTCGATTC
ACACGGAAGTTTCACAAACTTCTTCGCCATACCACTCAGTCTCTTTATCG
CTATACCAAACCTCTTACTCATTTGGGGAATCCGAAAAACGAACCCTAAC
AAAATCAACATGGCTAAAAGACTATTCATCTATCGTTCCTTAACCGATTT
ACTGATCGGTGTGGTCGGGATACCGTATTTCGGACTCGCTTCTCTGCTGA
ACCAACCTTGTATACACATCTCGATCGCAAATTGTATTGGTGTCTTCTCG
ATCATTATCGGAACATTAACAATCAGCACCATTAGCTTGTTAAGACTCAT
ATCCCTAATCAAACCTTTCTATAAAGTTCACCAACACTGGCTTGCAATAG
CTCTTTTACTACAATTCACAGTCGCGGTATTTTTCTGTACTTTCAACTAT
CTAGTCAACAACACAGTTATCGAATTGTATCCGCTACAGTGTGTTTTAAA
CGGCTTAACAATCATTCTACATATATTATTCGCTACCGTTTTCAATCTGT
TATCAATGTTCACTATTGAGCGACAAAAAATCGGTCCGCAACATTCAGTT
TCCGGTAAAGCAGCATTACATCGGAACACGAAAGCTATCCGGCGTCTTTT
CCGTGTCACAACTGTAATGGCTATTTGTTATTTACCGTCAGCTATAACGT
ATGTTTATTTCGGTGGACTGTTACTTAACGGGCGTATCAAAGCTGACGTA
TTCGCGTTTTTGTATGACGTGGTGGATTTTGTTTTCATACCAGTCATGAT
TTGTCCTGCGATAGCTGCTATTGTTTATATCGTATGGAACAGACAGATTG
TCAATTATTATAAgaaagttttgttttgcaaATCGAAGAAAAAGACTGAT
ATTATAGAGCTAGGTTCACATGGATGATAAGAAATCATTGTTTTCCTGAG
ATTCCCAGCAATTACCAGCTTTTTTTCTCGCAAAATGCTTCTGGTAATTT
GATTGTCATTGAAAAACACTTCATTTACCATAGTTTTACAGTACAGTCTT
CTTCATGACTCGAACGACAAAGAGGGAGGGCGAAATCGTGCAAGTCAAGG
agagattcgagtaatttttaCGATTTAAAACGATGAAATGCTTGAGTATT
TTTAAAACCTTGTTTTTCATATGATTTTAAGTGGTCTATCAACCGATCTC
TTAGGCTCAGGTGCTCTCTGTCAATATAGTCCCAGAAAGACTGGCTTTCT
CTCTCAAATAATTAATTATCAGATCATTTAAGTCCCgtaaaattatccaa
a Coding sequence (CDS) from alignment at sc0000025:257768..259668+ >TCONS_00003095 ID=TCONS_00003095|Name=TCONS_00003095|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0000025:257768..259668+ (Clytia hemisphaerica)
ATGAAAAATTGCAGTTTTCAATCATGGAAACTTTTTATGTCCGATGATAA
CGAAACCGATCAATTCCTCGAAGAAAGTCGAGATATATCGAATGAACTCG
ATTCACACGGAAGTTTCACAAACTTCTTCGCCATACCACTCAGTCTCTTT
ATCGCTATACCAAACCTCTTACTCATTTGGGGAATCCGAAAAACGAACCC
TAACAAAATCAACATGGCTAAAAGACTATTCATCTATCGTTCCTTAACCG
ATTTACTGATCGGTGTGGTCGGGATACCGTATTTCGGACTCGCTTCTCTG
CTGAACCAACCTTGTATACACATCTCGATCGCAAATTGTATTGGTGTCTT
CTCGATCATTATCGGAACATTAACAATCAGCACCATTAGCTTGTTAAGAC
TCATATCCCTAATCAAACCTTTCTATAAAGTTCACCAACACTGGCTTGCA
ATAGCTCTTTTACTACAATTCACAGTCGCGGTATTTTTCTGTACTTTCAA
CTATCTAGTCAACAACACAGTTATCGAATTGTATCCGCTACAGTGTGTTT
TAAACGGCTTAACAATCATTCTACATATATTATTCGCTACCGTTTTCAAT
CTGTTATCAATGTTCACTATTGAGCGACAAAAAATCGGTCCGCAACATTC
AGTTTCCGGTAAAGCAGCATTACATCGGAACACGAAAGCTATCCGGCGTC
TTTTCCGTGTCACAACTGTAATGGCTATTTGTTATTTACCGTCAGCTATA
ACGTATGTTTATTTCGGTGGACTGTTACTTAACGGGCGTATCAAAGCTGA
CGTATTCGCGTTTTTGTATGACGTGGTGGATTTTGTTTTCATACCAGTCA
TGATTTGTCCTGCGATAGCTGCTATTGTTTATATCGTATGGAACAGACAG
ATTGTCAATTATTATAAgaaagttttgttttgcaaATCGAAGAAAAAGAC
TGATATTATAGAGCTAGGTTCACATGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003095-exon-sc0000025-1491911889:257768..257791 | TCONS_00003095-exon-sc0000025-1491911889:257768..257791 | Clytia hemisphaerica | exon |
| TCONS_00003095-exon-sc0000025-1510915933:257768..257791 | TCONS_00003095-exon-sc0000025-1510915933:257768..257791 | Clytia hemisphaerica | exon |
| TCONS_00003095-exon-sc0000025-1575043694:257768..257791 | TCONS_00003095-exon-sc0000025-1575043694:257768..257791 | Clytia hemisphaerica | exon |
| TCONS_00003095-exon-sc0000025-1491911889:258248..259668 | TCONS_00003095-exon-sc0000025-1491911889:258248..259668 | Clytia hemisphaerica | exon |
| TCONS_00003095-exon-sc0000025-1510915933:258248..259668 | TCONS_00003095-exon-sc0000025-1510915933:258248..259668 | Clytia hemisphaerica | exon |
| TCONS_00003095-exon-sc0000025-1575043694:258248..259668 | TCONS_00003095-exon-sc0000025-1575043694:258248..259668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:257768..259668 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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