TCONS_00003093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003093
Unique NameTCONS_00003093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003093 ID=TCONS_00003093|Name=TCONS_00003093|organism=Clytia hemisphaerica|type=transcript|length=1763bp
AGCATTGTCTTTTTATTTCCTAATTTATTCTAACaggttaaaaaataaaa
aattcaaaacaatataatattaagCATGGAGATCCAAAATGCTAATCCAA
CGGTGTACGAGAAAGCGAAATTGAGAAACATCACagctgaagaagaagat
gaagaagtcAACGATCCTATTGATTCTCGAGAAATTTTTGATATCATTCG
TAATATCAATGACCCTGAACATCCGTTAACTTTGGAACAGTTGAATGTGG
TGGAGGAGAAGAATATTGATGTGGATGATGACAAGAGTTATTTGAAGATC
ATGTTCACACCTACTATCCCTCACTGTAGTATGGCCACACTGATTGGTCT
ATCCATCAGAGTTCTTTTGTTGAGATCATTGCCAACTCGGTATAAGGTCG
ATGTTTTGATCTCTCCAGGGACACATGTTTCGGAGCTGGCTGtgAACAAA
CAACTAGCAGACAAAGAAAGAGTTGCTGCTGCTTTGGAGAATGTTCATCT
TTTGAATGTCATCAATCAATGTCTGGCCATTGATAagaattaagtttttc
aaaagtttgataacAAAGTGTTGTAGATAATGGTTGATGTATCTAACTGT
AAATTGCGCATAATTCAATCTGGATGTAACACAGGTTAtagtatattttt
tttgctgGCAGATATGGATTCTGTTACTTATGCATTGCCTTCATTGCTAG
ATGTTTTGGTTCGGTTATCTCTAAAACGGTGTTTCATTGTCCTTGAAATC
ATTATTACTAAATCAGACATAATATTTACCACCGTAGGAAATGATTGAGA
TGTTTTTTGGCTTTCGAAATTGCTATTGGCACTtaatatttttagtttga
aatgGTATTGCTTTTGCAGAAAGTTGTTCTTATTTCGATTTTGTTGTTAG
TGGGAACCCAACAAACAATACAATAGATTTACTTTAAAGATGGCGGATAA
GAAATGTTTTGGTAGACTTGAAAGCAAATGGAATAACCAAGTCATATGAT
GGATTGTTATAGACAAAGACGTTAAAAAGATGacgaaaaggagaaaaaaa
gatgacatttttatatttttaatggaaagccataaTAAATGACGAATATT
TTTGTCTAAAAAGCTTCGGCATTACAAAATAAATGCGAAATCtatatttt
gttcaaaattcaaatttcacttGATTCAAAGAGATCCTTGGTTCGGGTTG
CTATCTGGCTCCTTTCCCCCCTAAATGATAGATGTTTGGGGAATTTCTTC
CTTTATTTAATTAGTTCTCATCGGAGCACTCTCATAGcttgtttgattat
ttttattaaaatcccTCCTATTTTCATGTTTTGGCCTAAAACAAGCTATC
ATAAGCACACCTTAACAGCGTATAACCAATATGTGTTGTTAAGGATCTCT
TTTTTGCAAGATGcacgttttttcttataagaacataaaaaaaTTCGGAA
GCCTTCAGAtatattcttaaaatattcaatttcacCATTTCgtgagaatt
tttcaaaaaattggatGTTCTCGAGTTCGCAAAGCGAACATTTTGATCAT
TAAAGACTTATTtgcttatatagtttgctcttatcaGAAACGATTAACGT
TTCCTTTGGGGAAAAATGTGTCTTCCAGCTCAAAATTTGGATAAACTTCA
CAATACAAATGATACTAAATGTAAATGACACTTTAAGCCAATATAAAGAG
AAGACTTGGAGACTTATTGAGACTTTAATAATAAATTGTAAATGCAGGTT
TGTATTATTTCAG
Run BLAST on NCBI

transcript from alignment at sc0000025:253207..257228+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003093 ID=TCONS_00003093|Name=TCONS_00003093|organism=Clytia hemisphaerica|type=transcript|length=4022bp|location=Sequence derived from alignment at sc0000025:253207..257228+ (Clytia hemisphaerica)
AGCATTGTCTTTTTATTTCCTAATTTATTCTAACaggttaaaaaataaaa
aattcaaaacaatataatattaagCATGGAGATCCAAAATGCTAATCCAA
CGGTGTACGAGAAAGCGAAATTGAGAAACATCACagctgaagaagaagat
gaagaagtcAACGATCCTATTGATTCTCGAGAAATTTTTGATATCCTTTT
CAGATGTTTTTCCCTTATGTTAAGCAACTACATTTTTCTAATAGACTCTC
TTAGCTATTTTAAGGTTCAAAGTACTATTAAgcaatttttattaaaagtg
aAAGCCTTAATGAGATCATTGAATTCCATTAGTTTCTTTGAAAGATTCGA
AACAACAGTTTAAGATTCGATTAAGCTAGCTCGAATCAAAATCAGTCTTA
CAATAAATCAAGTAGAAAAACTTCTGTGCTGACCAATCGGGGGAGGGCGT
CACCTACGTTCAaataaaaatgatcaaaatgatcAAACCTCTTTCCATAA
ATTTGAAGAGAAAATGTGACTATTTCTCACTAGCTTTAACcttttcaggg
tcttatttcaggctatttaaactttttaaagagCAAAAATCGACACCTGC
TTCACCAACAGTGAGAATTTTTTCTAAcccaaaattcacttttattGTTC
TCCTTGACTAAAAAATCACATATCATTCGTAATATCAATGACCCTGAACA
TCCGTTAACTTTGGAACAGTTGAATGTGGTGGAGGAGAAGAATATTGATG
TGGATGATGACAAGAGTTATTTGAAGATCATGTTCACACCTACTATCCCT
CACTGTAGTATGGCCACACTGATTGGTCTATCCATCAGAGTTCTTTTGTT
GAGATCATTGCCAACTCGGTATAAGGtgagaattttcaaagatgCACTCA
ATAAAAGTAGTGTGCACGACGTTTCATAAAAGagcatctaaaatttttga
agccttcagattttcttaactttttgaaatttaagcctaaaaattgtCTT
CGGCTGCTGTTATTTTCGACTGACTTTGTAACAACAAtgtgtattatttt
ttttattttgcaataTATTTCGAACTTCGTTCATCTTCAggctaaaaata
aaagtaaaagcaAGTTAATactgttgaaattaaaaaaacatacaGACATT
GATAAAAAAAGTTCTATATCTAACAACAGTCTATACTCTCAACTCTCact
aaataaaatacaaaaataatcatttcaatttcaaaaatgattccACATCT
AGTGAATCCCAAAGTACTCTTAAGTTTTAAAGGAATCAAAATTTAATTGC
TAATCACCGACTTAAAGTAAAGATCAAGAAGCtctttttcaccatttttc
taGAATGTATTTTAGTGCAAATTCTTAAGGAACAGGGTTttctagagtct
gcaaagccttaaaatgttctaaacttgttcttaatatttttgccatcgaa
tcATTATTAACGCACTTTGCGTGCATTTTTGATTTAAAGACTTTCTTAGA
TTCGGTGAAGGTTTCGAAAGAAATTTCATCggccatttttttaaaaacta
attGGTTACTTGAACTCAAAATTTTCCTAATAATAAGGCATTGAGTTAAT
GTGGTAGCTAGTCAAGTGCCTCATTTTCCTCAAAGTTTTCCTTTTTATAC
CAGGTCGATGTTTTGATCTCTCCAGGGACACATGTTTCGGAGCTGGCTGG
Tatgatattattttttgaaattatttgtgcaaagtttttgaataagaaaa
gGCTTTTCCGAAAAGAAAATATAGATCGGAAGAGAATCGGTTATGTAATA
ATATTATTTCAATGATTTATCCCTGGAAATTTCTATTAATCAGCCCCCTC
CCCTGAACATATATTAAGTGAATTCATGGACATAAAAATTTTTTCCTGGT
CATTGCAAATTCTTAGGAGTCTTTCTACCAACTGGGTTTGGCAATATGTA
CTCGAAACTCTTCAGGAATATATTCATTCTGGAAGAGTCCACCCGGGgag
ggggcactgggtttgcggactgacggtatgcgcgggccaaaaattggctt
ttaaaattgattgcacccttacagtgcagcaaaaatcagtgaaaatcata
cccttagagtgcattttcccccaaattttcgatccttttcgtgcaaaaaa
tggtcaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtcgatccctttcgtgcaaaaaatggtcaaaattctagcatttttggtc
aaaatatctagatttttcaagaattttctgaaatttctacccttacagtg
catatCTAgtttttcctacccttacagtgcatttttaacatattggaaaa
ggtacccttaggacccgcacatacccgtcggtccttttgcccagctgccc
ccggGAGAGCCCACTATTCAAACATATCCTCTCTATTTAATACAAATTTT
TGTGTAGCTCTTTCCTATGTCACCCTTCTTTTTAGGAGCTCCGTTAGAAT
CTTAAGTAGACAGTTTTCCATCTAAGACGcttctattttctttttcttca
gtgAACAAACAACTAGCAGACAAAGAAAGAGTTGCTGCTGCTTTGGAGAA
TGTTCATCTTTTGAATGTCATCAATCAATGTCTGGCCATTGATAagaatt
aagtttttcaaaagtttgataacAAAGTGTTGTAGATAATGGTTGATGTA
TCTAACTGTAAATTGCGCATAATTCAATCTGGATGTAACACAGGTTAtag
tatattttttttgctgGCAGATATGGATTCTGTTACTTATGCATTGCCTT
CATTGCTAGATGTTTTGGTTCGGTTATCTCTAAAACGGTGTTTCATTGTC
CTTGAAATCATTATTACTAAATCAGACATAATATTTACCACCGTAGGAAA
TGATTGAGATGTTTTTTGGCTTTCGAAATTGCTATTGGCACTtaatattt
ttagtttgaaatgGTATTGCTTTTGCAGAAAGTTGTTCTTATTTCGATTT
TGTTGTTAGTGGGAACCCAACAAACAATACAATAGATTTACTTTAAAGAT
GGCGGATAAGAAATGTTTTGGTAGACTTGAAAGCAAATGGAATAACCAAG
TCATATGATGGATTGTTATAGACAAAGACGTTAAAAAGATGacgaaaagg
agaaaaaaagatgacatttttatatttttaatggaaagccataaTAAATG
ACGAATATTTTTGTCTAAAAAGCTTCGGCATTACAAAATAAATGCGAAAT
CtatattttgttcaaaattcaaatttcacttGATTCAAAGAGATCCTTGG
TTCGGGTTGCTATCTGGCTCCTTTCCCCCCTAAATGATAGATGTTTGGGG
AATTTCTTCCTTTATTTAATTAGTTCTCATCGGAGCACTCTCATAGcttg
tttgattatttttattaaaatcccTCCTATTTTCATGTTTTGGCCTAAAA
CAAGCTATCATAAGCACACCTTAACAGCGTATAACCAATATGTGTTGTTA
AGGATCTCTTTTTTGCAAGATGcacgttttttcttataagaacataaaaa
aaTTCGGAAGCCTTCAGAtatattcttaaaatattcaatttcacCATTTC
gtgagaatttttcaaaaaattggatGTTCTCGAGTTCGCAAAGCGAACAT
TTTGATCATTAAAGACTTATTtgcttatatagtttgctcttatcaGAAAC
GATTAACGTTTCCTTTGGGGAAAAATGTGTCTTCCAGCTCAAAATTTGGA
TAAACTTCACAATACAAATGATACTAAATGTAAATGACACTTTAAGCCAA
TATAAAGAGAAGACTTGGAGACTTATTGAGACTTTAATAATAAATTGTAA
ATGCAGGTTTGTATTATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001716XLOC_001716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003093-exon-sc0000025-1491911889:253207..253396TCONS_00003093-exon-sc0000025-1491911889:253207..253396Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1510915933:253207..253396TCONS_00003093-exon-sc0000025-1510915933:253207..253396Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1575043694:253207..253396TCONS_00003093-exon-sc0000025-1575043694:253207..253396Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1491911889:253876..254081TCONS_00003093-exon-sc0000025-1491911889:253876..254081Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1510915933:253876..254081TCONS_00003093-exon-sc0000025-1510915933:253876..254081Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1575043694:253876..254081TCONS_00003093-exon-sc0000025-1575043694:253876..254081Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1491911889:254860..254905TCONS_00003093-exon-sc0000025-1491911889:254860..254905Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1510915933:254860..254905TCONS_00003093-exon-sc0000025-1510915933:254860..254905Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1575043694:254860..254905TCONS_00003093-exon-sc0000025-1575043694:254860..254905Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1491911889:255908..257228TCONS_00003093-exon-sc0000025-1491911889:255908..257228Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1510915933:255908..257228TCONS_00003093-exon-sc0000025-1510915933:255908..257228Clytia hemisphaericaexon
TCONS_00003093-exon-sc0000025-1575043694:255908..257228TCONS_00003093-exon-sc0000025-1575043694:255908..257228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:253207..257228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.43	26.9083	37.3294	42.4792	4.61812	3.94616	10.6546	12.2829	10.9721	7.97986	11.6182	9.62621	8.34171	8.41544	10.7849	7.42475	13.0026	11.1214	6.60306	5.58085	20.0967	18.7593	19.7227	17.1837	7.95163	10.7411	12.1208	14.6837	7.5573	10.6715
Blast
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BLAST of TCONS_00003093 vs. Swiss-Prot (Human)
Match: MIP18 (Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo sapiens GN=FAM96B PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.018e-68
Identity = 104/149 (69.80%), Postives = 127/149 (85.23%), Query Frame = 1 
Query:   82 IQNANPTVYEKAKLRNITAEEEDEEVNDPIDSREIFDIIRNINDPEHPLTLEQLNVVEEKNIDVDDDKSYLKIMFTPTIPHCSMATLIGLSIRVLLLRSLPTRYKVDVLISPGTHVSELAVNKQLADKERVAAALENVHLLNVINQCLA 528
            ++NANP +Y+++  R +TA EEDE+V D ID+REIFD+IR+INDPEHPLTLE+LNVVE+  + V D +S + + FTPTIPHCSMATLIGLSI+V LLRSLP R+K+DV I+PGTH SE AVNKQLADKERVAAALEN HLL V+NQCL+
Sbjct:   12 LENANPLIYQRSGERPVTAGEEDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLS 160
The following BLAST results are available for this feature:
BLAST of TCONS_00003093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIP188.018e-6869.80Mitotic spindle-associated MMXD complex subunit MI... [more]
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