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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003090 ID=TCONS_00003090|Name=TCONS_00003090|organism=Clytia hemisphaerica|type=transcript|length=789bp
AAGTTATTTAGGGTTATAAATACCAAAGCACCAGGAGAACTAAGCATGCT
ACACGTCATAACGATTCTACTTGTAATTTCCTTCGAACGAACAAGCCAAC
TCAAAGTACAATTCCTACTTCCCACTGTAGAGAGGTCGGTTGAAGGAGAT
CGATTTTCCATTCCCAATTCGAAAGACTGCCGGACGTATAATGCAGTACa
caatgaaacatttttactgGGGAGAAACACGTATATTTGGTGCAAATGTA
GAGTAGATGAAGCGACAGTTTTCTTGAAGAAGAATGGACCACTTTGCTTG
TCTGATAGTGGTCATCCTGAAATTTATCAAACAGTTCGCCAAGATTCCCT
TCAACTCTTCGCTTTTAAATCCTCTGTACCAACTATGTTCTTCGTGAACA
ATACATGGCGATTCAGAACAACCGAGTATGGGACAGTTCTGGTGATGAAA
GATACTGGTTCAACATTCAATGCAAGGTCGAGATGTTTAAAGAATTTCAC
ATTAAGTTCCGAGGAAAATGATGGTTtcggaggatggaaaaaagaTTCGT
ACTTTACTCCCTTTAAGCAAAAACTTTTCCTCAACGGTAAATCATCAATA
GAGCTGAAACCATCTGTATCTCACATGAGGGAATTCAAGGGTCGTTTATT
TCGGATCCTTCTTGCTTGTGGTCCTTCTAACTACACGATGAACGTCAAGT
TCGATGGACAAGTAGCTTGTATGTATAAATCTGTcaaattatctaaaaaa
attCGCAAAAGCTTGCAAAGTTACTTTTCACCAAATTTA Run BLAST on NCBI protein sequence of TCONS_00003090-protein >TCONS_00003090-protein ID=TCONS_00003090-protein|Name=TCONS_00003090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
KLFRVINTKAPGELSMLHVITILLVISFERTSQLKVQFLLPTVERSVEGD
RFSIPNSKDCRTYNAVHNETFLLGRNTYIWCKCRVDEATVFLKKNGPLCL
SDSGHPEIYQTVRQDSLQLFAFKSSVPTMFFVNNTWRFRTTEYGTVLVMK
DTGSTFNARSRCLKNFTLSSEENDGFGGWKKDSYFTPFKQKLFLNGKSSI
ELKPSVSHMREFKGRLFRILLACGPSNYTMNVKFDGQVACMYKSVKLSKK
IRKSLQSYFSPNL Run BLAST on NCBI transcript from alignment at sc0000025:177790..179116+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003090 ID=TCONS_00003090|Name=TCONS_00003090|organism=Clytia hemisphaerica|type=transcript|length=1327bp|location=Sequence derived from alignment at sc0000025:177790..179116+ (Clytia hemisphaerica)
AAGTTATTTAGGGTTATAAATACCAAAGCACCAGGAGAACTAAGCATGCT
ACACGTCATAACGATTCTACTTGTAATTTCCTTCGAACGAACAAGCCAAC
TCAAAGTACAATTCCTACTTCCCACTGTAGAGAGGTCGGTTGAAGGAGAT
CGATTTTCCATTCCCAATTCGAAAGACTGCCGGACGTATAATGCAGTACa
caatgaaacatttttactgGGGAGAAACACGTATATTTGGTGCAAATGTA
GAGTAGATGAAGCGACAGTTTTCTTGAAGAAGAATGGACCACTTTGCTTG
TCTGATAGTGGTAAGACCAACATACAGTTAATACGCTCTCCATTTTAACA
TTCGGTACGCTCCATTGTTCGATATTATTGAAAGTCACCATCAGCAACTT
TCATAAACGACAGTCTACTGTTTTATATGTTCCCCAAAAAActttccctt
gaaaatcgaattaaagagcgtcaCACTCTATTTAACCCTAATTTAACCCC
TTTTTATAGGTCATCCTGAAATTTATCAAACAGTTCGCCAAGATTCCCTT
CAACTCTTCGCTTTTAAATCCTCTGTACCAACTATGTTCTTCGTGAACAA
TACATGGCGATTCAGAACAACCGAGTATGGGACAGTTCTGGTGATGAAAG
ATACTGGTTCAACATTCAATGCAAGGTCGAGATGTTTAAAGAATTTCACA
TTAAGTTCCGAGGAAAATGATGGTTtcggaggatggaaaaaagaTTCGTA
CTTTACTCCCTTTAAGCAAAAACTTTTCCTCAACGGTAAATCATCAATAG
AGGTAAGAGCAGAAGGTATTTTGTGGTAAAGTGGTTTCTAAAATCAAATA
GTCATACAAGAGGCTTCTATATGACGTAAGCTTTTGCGACTGGTGAATAT
TAGGATCTAATTTCTTTGGTTCTAAGAATTCTATTTTGGTAGTAACTCTT
GACAATCTTAGTACAACCCATCTacaaaatctttcgaaaaatcaaggcaa
aaatttgagcaaaGTCTGTAAAGCAgcttaaaatctttgaaaattaccTG
GATTGCCTGGATGGTTGAAGTGTAATCTCCTCGACTTCAAAATTCTGTTT
AAATTTCAAAgacctttaaatattttttctttatttattagCTGAAACCA
TCTGTATCTCACATGAGGGAATTCAAGGGTCGTTTATTTCGGATCCTTCT
TGCTTGTGGTCCTTCTAACTACACGATGAACGTCAAGTTCGATGGACAAG
TAGCTTGTATGTATAAATCTGTcaaattatctaaaaaaattCGCAAAAGC
TTGCAAAGTTACTTTTCACCAAATTTA Coding sequence (CDS) from alignment at sc0000025:177790..179116+ >TCONS_00003090 ID=TCONS_00003090|Name=TCONS_00003090|organism=Clytia hemisphaerica|type=CDS|length=2367bp|location=Sequence derived from alignment at sc0000025:177790..179116+ (Clytia hemisphaerica)
AAGTTATTTAGGGTTATAAATACCAAAGCACCAGGAGAACTAAGCATGCT
ACACGTCATAACGATTCTACTTGTAATTTCCTTCGAACGAACAAGCCAAC
TCAAAGTACAATTCCTACTTCCCACTGTAGAGAGGTCGGTTGAAGGAGAT
CGATTTTCCATTCCCAATTCGAAAGACTGCCGGACGTATAATGCAGTACa
caatgaaacatttttactgGGGAGAAACACGTATATTTGGTGCAAATGTA
GAGTAGATGAAGCGACAGTTTTCTTGAAGAAGAATGGACCACTTTGCTTG
TCTGATAGTGGTCATCCTGAAATTTATCAAACAGTTCGCCAAGATTCCCT
TCAACTCTTCGCTTTTAAATCCTCTGTACCAACTATGTTCTTCGTGAACA
ATACATGGCGATTCAGAACAACCGAGTATGGGACAGTTCTGGTGATGAAA
GATACTGGTTCAACATTCAATGCAAGGTCGAGATGTTTAAAGAATTTCAC
ATTAAGTTCCGAGGAAAATGATGGTTtcggaggatggaaaaaagaTTCGT
ACTTTACTCCCTTTAAGCAAAAACTTTTCCTCAACGGTAAATCATCAATA
GAGCTGAAACCATCTGTATCTCACATGAGGGAATTCAAGGGTCGTTTATT
TCGGATCCTTCTTGCTTGTGGTCCTTCTAACTACACGATGAACGTCAAGT
TCGATGGACAAGTAGCTTGTATGTATAAATCTGTcaaattatctaaaaaa
attCGCAAAAGCTTGCAAAGTTACTTTTCACCAAATTTAAAGTTATTTAG
GGTTATAAATACCAAAGCACCAGGAGAACTAAGCATGCTACACGTCATAA
CGATTCTACTTGTAATTTCCTTCGAACGAACAAGCCAACTCAAAGTACAA
TTCCTACTTCCCACTGTAGAGAGGTCGGTTGAAGGAGATCGATTTTCCAT
TCCCAATTCGAAAGACTGCCGGACGTATAATGCAGTACacaatgaaacat
ttttactgGGGAGAAACACGTATATTTGGTGCAAATGTAGAGTAGATGAA
GCGACAGTTTTCTTGAAGAAGAATGGACCACTTTGCTTGTCTGATAGTGG
TCATCCTGAAATTTATCAAACAGTTCGCCAAGATTCCCTTCAACTCTTCG
CTTTTAAATCCTCTGTACCAACTATGTTCTTCGTGAACAATACATGGCGA
TTCAGAACAACCGAGTATGGGACAGTTCTGGTGATGAAAGATACTGGTTC
AACATTCAATGCAAGGTCGAGATGTTTAAAGAATTTCACATTAAGTTCCG
AGGAAAATGATGGTTtcggaggatggaaaaaagaTTCGTACTTTACTCCC
TTTAAGCAAAAACTTTTCCTCAACGGTAAATCATCAATAGAGCTGAAACC
ATCTGTATCTCACATGAGGGAATTCAAGGGTCGTTTATTTCGGATCCTTC
TTGCTTGTGGTCCTTCTAACTACACGATGAACGTCAAGTTCGATGGACAA
GTAGCTTGTATGTATAAATCTGTcaaattatctaaaaaaattCGCAAAAG
CTTGCAAAGTTACTTTTCACCAAATTTAAAGTTATTTAGGGTTATAAATA
CCAAAGCACCAGGAGAACTAAGCATGCTACACGTCATAACGATTCTACTT
GTAATTTCCTTCGAACGAACAAGCCAACTCAAAGTACAATTCCTACTTCC
CACTGTAGAGAGGTCGGTTGAAGGAGATCGATTTTCCATTCCCAATTCGA
AAGACTGCCGGACGTATAATGCAGTACacaatgaaacatttttactgGGG
AGAAACACGTATATTTGGTGCAAATGTAGAGTAGATGAAGCGACAGTTTT
CTTGAAGAAGAATGGACCACTTTGCTTGTCTGATAGTGGTCATCCTGAAA
TTTATCAAACAGTTCGCCAAGATTCCCTTCAACTCTTCGCTTTTAAATCC
TCTGTACCAACTATGTTCTTCGTGAACAATACATGGCGATTCAGAACAAC
CGAGTATGGGACAGTTCTGGTGATGAAAGATACTGGTTCAACATTCAATG
CAAGGTCGAGATGTTTAAAGAATTTCACATTAAGTTCCGAGGAAAATGAT
GGTTtcggaggatggaaaaaagaTTCGTACTTTACTCCCTTTAAGCAAAA
ACTTTTCCTCAACGGTAAATCATCAATAGAGCTGAAACCATCTGTATCTC
ACATGAGGGAATTCAAGGGTCGTTTATTTCGGATCCTTCTTGCTTGTGGT
CCTTCTAACTACACGATGAACGTCAAGTTCGATGGACAAGTAGCTTGTAT
GTATAAATCTGTcaaattatctaaaaaaattCGCAAAAGCTTGCAAAGTT
ACTTTTCACCAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003090-exon-sc0000025-1491911889:177790..178099 | TCONS_00003090-exon-sc0000025-1491911889:177790..178099 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1510915933:177790..178099 | TCONS_00003090-exon-sc0000025-1510915933:177790..178099 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1575043694:177790..178099 | TCONS_00003090-exon-sc0000025-1575043694:177790..178099 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1491911889:178299..178591 | TCONS_00003090-exon-sc0000025-1491911889:178299..178591 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1510915933:178299..178591 | TCONS_00003090-exon-sc0000025-1510915933:178299..178591 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1575043694:178299..178591 | TCONS_00003090-exon-sc0000025-1575043694:178299..178591 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1491911889:178931..179116 | TCONS_00003090-exon-sc0000025-1491911889:178931..179116 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1510915933:178931..179116 | TCONS_00003090-exon-sc0000025-1510915933:178931..179116 | Clytia hemisphaerica | exon |
| TCONS_00003090-exon-sc0000025-1575043694:178931..179116 | TCONS_00003090-exon-sc0000025-1575043694:178931..179116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:177790..179116 + |
Blast
The following BLAST results are available for this feature:
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