TCONS_00003084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003084
Unique NameTCONS_00003084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003084 ID=TCONS_00003084|Name=TCONS_00003084|organism=Clytia hemisphaerica|type=transcript|length=682bp
TACTAGACAAATGGAGCTGTCGCGCAGACGAGGAATGTGTTTGTAATGCA
CCCTTGACAACTTACATGATCAACGAAAATGGCACGCGTGGCTGCTACGG
ATCGGTGGAAACAATTGAACGAAATTTCAAAGGGCATGACATTTTCTTAT
TGGATAATCAAGTCGTATTTTATGTATCCTGGAAAGATGACGATAAATGG
CGTAatccaaaatcacaaaagatATTTGACATTGATGGCAATGTAGTAAC
TTCGAATACATGTGACTTGAACAGTTTCTTTTCTACCGAAGTTTACAATC
ATGACCGTTGGCAAACTTGGAGTAATGATTATTTCAAACTTGATCCGACA
GAGAATTCTTCCGATGGAGGAACCACCATAGGGATTGATATTACAACGAG
AACTTTGGCGATCTGCAAGGTCACTTGATCAGATTTGGCTTTAAGTGCAA
CAACAAAGAAGTTGCTTATttgtttcaaaagtttcaagGAGAAAGAGAGT
ATTTACCAGGCAAAGATTTAGCTGAGCCATCCACCGAGCCTTTACTGACA
GGTAGCGAATTAACATTGGTCATTGGCTGCACTTTGGGAGGCGTTGGTTT
CATTGGAATCATTGTCACTCTTTATATTCTCTTAAGAAAAAGGAGGAGAG
ATGGAAATGAAGAGTTAAAAAATGATCCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000025:148005..150811+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003084 ID=TCONS_00003084|Name=TCONS_00003084|organism=Clytia hemisphaerica|type=transcript|length=2807bp|location=Sequence derived from alignment at sc0000025:148005..150811+ (Clytia hemisphaerica)
TACTAGACAAATGGAGCTGTCGCGCAGACGAGGAATGTGTTTGTAATGCA
CCCTTGACAACTTACATGATCAACGAAAATGGCACGCGTGGCTGCTACGG
ATCGGTGGAAACAATTGAACGAAATTTCAAAGGTATACCTCCGATTATTT
CCTTGGTCAATACTTGAGCTAGACTATTAAGTATTGAGTACAGTATATTG
ATGTCAAATGCTCAGTAACTAAGGAGGAGTATAAAGGTTAAGTGGATCGA
TCCAGGAAAAATTGAATCCCTCTCCTATCTTCGGTTAGAAAGCTCCCAAG
AAAAGGAGCTCCGGATCCCCTCTGACAGCAATTACTTAACAACTCTCCTT
CTGACCCAATCCTTTATTGTCATAGGGCATGACATTTTCTTATTGGATAA
TCAAGTCGTATTTTATGTATCCTGGAAAGATGACGATAAATGGCGTAatc
caaaatcacaaaagatATTTGACATTGATGGCAATGTAGTAACTTCGAAT
ACATGTGACTTGAACAGTTTCTTTTCTACCGAAGTTTACAATCATGACCG
TTGGCAAACTTGGAGTAATGATTATTTCAAACTTGATCCGACAGAGAATT
CTTCCGATGGAGGAACCACCATAGGGATTGATGTAAGTAAAAAGGAGACT
GGGTAAGATTTTGAGTTGACTAGAGAAGGACGATACTTGTCccgcgggtc
aaaactgcgggttttcaatGATTTCAGTCTCTTGTCTGTTCCCACGTAGA
ACCCGTTAATTATACAGATTTACAAGCTAGGCTTGCAGTGGGCCTCTAAC
CGATCTTTTTTTACACTATTCTTGAATCGTATTTTGAGGGATGGTTTTCC
CATGCATCGTTTTCTTTGAAGGTCTTGATAGACTTTACTGTAAACGACAT
TTCTCGGCAGTCTATTCCAGGTTGGCACACATCTGTAATAAAAGGATTTC
GTTTGTGGTCCGTGGAAACCGTCATTCGTGACGTTAATGGCACAATTGGT
ACCGAAAGctaaaaaaaaagtcaacttTAACTTCTTAAATTCCTGGTATT
AAATTTAACTGTTATTTCAGCTTTTGTAAGGTAAACAAAAAACAGGAATG
TTACTAACTTCAAGCTCCAAAAAAGAATGTGCTTCAAAacttaatgtttt
ttttcactttagaaAGATTACAACGAGAACTTTGGCGATCTGCAAGGTCA
CTTGATCAGATTTGGCTTTAAGTGCAACAACAAAGAAGTTGCTTATttgt
ttcaaaagtttcaagGAGAAAGAGAGTGTAAGTTTTTCATGGGCATACCT
TTGTTTCGGATTAAAACCCATTTACTTTAAGTATGTTTTCGTGTTTACTA
TCACGTGGAAACCATTCTCAAGgggaaaaagtctaatttttgGTGGAACA
GGTTCCATGTGAATGGACTGTGGTTTATTTCCGAAGCAAAGGCATCAATA
ATCTTGAATTCCTCGTAGTATTTGGTTGGTAGAGGAAGGGCAAATGTTTC
AAAAACCAATTCTTATTTCCATTAATTAGAAGTCTAAAAATACCCTAACA
CCTAATTGTACCCTTTGGTCGATAACCCAAGAAGAAGCAAATCAAGAATT
CAAATGAGACTCAATGATTGTCCTGCCTACTACCCAATGAACACACTCGA
TTGATTATTCTTACATTTTTAGATTTACCAGGCAAAGATTTAGCTGAGCC
ATCCACCGAGGTAAGATTTAATGCCaatgtctcaaaagtatgtagatact
ttagtttagtttttgaacattttttcaacactTATTCATGCTATTTTACa
aagttatacaccgttggaaagatatttccaaggaaaattctctaaaggat
aaattttaattgataaatttttgaaaagctgaaaaatgaagaagaaaaat
gaaaatgaaaaaaaaattttcaactttttaaaagtcATGACATGaatttt
ttcagaatatttgaACTTTTCCGATTTCAAATCTGTATTTAGATTTTTCC
TATCTTTCTTAGATAAAAAAAGTTACAGCACTGTGAAGgtcatttttgct
gtttttggtcatttttggccgttttaggcctacagagggCATACTTTGAG
ACTGACTCCCGGAAGATTTAGTTGATATGGCCTAGTAGCAGATATGTGAA
TTGTGATTAAAGATTCGATTTAAGTTCTGATTAAAGCAAATCTCGGCGGC
GgtgtgaaatcaaaacaaatgaaattcGACAAAACTTTAATTCTTTTAGT
TATTATTCATTTCATTTTAGCCTTTACTGACAGGTAGCGAATTAACATTG
GTCATTGGCTGCACTTTGGGAGGCGTTGGTTTCATTGGAATCATTGTCAC
TCTTTATATTCTCTTAAGAAAAAGGTACGGTTGTCGATAAAGAAAAAGTC
CTATAAGCTTAATCTGAAAAAATGAGGTATGCAGTACCAAgctgtatttt
tttattttgatgtttttacttACAGCTTGATCTACCAATTAGATGCTTAT
AAACTCAGGGTCAGTAAATTTCTACCCTCGCGTAATAATTGAATCGTCGA
AATACGCTTCGTCCCTTCTAATATTGAAATGCATATCACTTTAGGAAGAA
CAGGCTCTAAGCCAGaaacattcaaaacaaaattcacaTCCTGTGTCGTA
AGCGGTAAAGTGCACAAACAGGGTTCTAACAGTGTCCAATTTGGAAAATC
CAGCTTGATTGAAAGCGTATCTTTATAATGTCTCCTATTCTACATCGTGT
ATCCCTCACTCTTTTAGGAGGAGAGATGGAAATGAAGAGTTAAAAAATGA
TCCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001710XLOC_001710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003084-exon-sc0000025-1491911889:148005..148136TCONS_00003084-exon-sc0000025-1491911889:148005..148136Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1510915933:148005..148136TCONS_00003084-exon-sc0000025-1510915933:148005..148136Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1575043694:148005..148136TCONS_00003084-exon-sc0000025-1575043694:148005..148136Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1491911889:148380..148636TCONS_00003084-exon-sc0000025-1491911889:148380..148636Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1510915933:148380..148636TCONS_00003084-exon-sc0000025-1510915933:148380..148636Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1575043694:148380..148636TCONS_00003084-exon-sc0000025-1575043694:148380..148636Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1491911889:149171..149281TCONS_00003084-exon-sc0000025-1491911889:149171..149281Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1510915933:149171..149281TCONS_00003084-exon-sc0000025-1510915933:149171..149281Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1575043694:149171..149281TCONS_00003084-exon-sc0000025-1575043694:149171..149281Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1491911889:149677..149714TCONS_00003084-exon-sc0000025-1491911889:149677..149714Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1510915933:149677..149714TCONS_00003084-exon-sc0000025-1510915933:149677..149714Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1575043694:149677..149714TCONS_00003084-exon-sc0000025-1575043694:149677..149714Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1491911889:150275..150378TCONS_00003084-exon-sc0000025-1491911889:150275..150378Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1510915933:150275..150378TCONS_00003084-exon-sc0000025-1510915933:150275..150378Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1575043694:150275..150378TCONS_00003084-exon-sc0000025-1575043694:150275..150378Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1491911889:150772..150811TCONS_00003084-exon-sc0000025-1491911889:150772..150811Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1510915933:150772..150811TCONS_00003084-exon-sc0000025-1510915933:150772..150811Clytia hemisphaericaexon
TCONS_00003084-exon-sc0000025-1575043694:150772..150811TCONS_00003084-exon-sc0000025-1575043694:150772..150811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:148005..150811 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0662505	0.0465453	0	0.0396688	0	0	0	0.441972	0.376405	0	7.01914e-09	0	0.211939	0	0.0135596	0.0108664	0.718946	0.217954	0.0494209	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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