TCONS_00003083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003083
Unique NameTCONS_00003083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003083 ID=TCONS_00003083|Name=TCONS_00003083|organism=Clytia hemisphaerica|type=transcript|length=875bp
attttctAAAACAGATTGGTGTAAAGAATGCATTGGTATTTGTTAACAAT
AATTATTATTTCATCCTACCAACAAATGTGCTCCACTGAGGAGACAACAA
CGAATACCTTTGAAGTTACACGAGGCTTCGAAGACAGTTTTAAATTCTTA
GAAAAGCGAGGGCTTGATTGCGAGACGTTGAAAACAGAGGATGATGGTAC
GAAAAGTTGTTTGTGTATAGGTATGGATGACAAGAAAACCATGATTTTCG
AAAGAAGTAGGACGAAAACAAAGGCAAAGTGTGAAATGAGCCGCGAAATC
ATGGATAACTTCAAACACGAAGAAATGTTTGGGGGAGGTGGACTAGAGCC
ATTCGAGTTCAGTATTGAGATGAACAAAGAGATTGGTTTGATGAGATGGA
ATGAAAATGAAGGGTGGATTGGTACATACGCCTTATACATCGCGGGTGGA
GATCGACCTGTGACAGAAAGAGAATGTAAAGATCCAAAGATTGAAAGTTT
GTAATAATTTGAAATGGGCGTCCTGCGACAAAGTAGTAGCTTCAGATTTC
ACGATCACAGAGAAAAAGACTGGATCCAACCAAGCTCATTTCGAATTCCA
GGTCATTTCACttcaaatgaaaatcaaaagcaAATATCAAGGACGTTTGG
TAGCCCTCCAAATGTTATGTGGGATTGAAAAGGCTTTCATGATCTTCAAG
TTTCAAGGAAGGCGGGATTACCCAATTCCAGATTCACCTGTAGTCATTTC
AACAACCGCAACACCAATAACAGATAATTCAACAACTCAGCCGCAACCTC
CACCCAAAACAACAATACAAGCCTCTGAAACGACAACCATGAGTTCTGCA
ATAACAACAACTTCAGGAAGTGGTA
Run BLAST on NCBI

transcript from alignment at sc0000025:143710..146851+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003083 ID=TCONS_00003083|Name=TCONS_00003083|organism=Clytia hemisphaerica|type=transcript|length=3142bp|location=Sequence derived from alignment at sc0000025:143710..146851+ (Clytia hemisphaerica)
attttctAAAACAGATTGGTGTAAAGAATGCATTGGTATTTGTTAACAAT
AATTATTATTTCATCCTACCAACAAATGTGCTCCACTGAGGAGACAACAA
CGAATACCTTTGAAGTTACACGAGGCTTCGAAGACAGTTTTAAATTCTTA
GAAAAGCGAGGGCTTGATTGCGAGACGTTGAAAACAGAGGATGATGGTAC
GAAAAGTTGTTTGTGTATAGGTATGGATGACAAGAAAACCATGATTTTCG
AAAGAAGTAGGACGAAAACAAAGGCAAAGTGTGAAATGAGCCGCGAAATC
ATGGATAACTTCAAACACGAAGGTtagttttatcaaaaaaatataacCAA
AAGCTAGAGTCGAATCTCCTGTGTAGGATTCGAAACCACTTATTTCTTCT
AGCTGCGCGATCCACGTGGCTTTCATACACATAGTAGATTAGAggtaaca
ttttgaaaaacgtaaAATACGAATTCAGAGAAAGTACTACATTCAATATA
TCATCCGAAACAGTATAAGAAGCTTTCTCCTCAAATTGTTTTCTCAAAGA
TAAATCTCgtcgaaaaagtgaaaaagtgacgtccGTCAGAGCCCAAATGG
GGAGAACTGACGAAAgttcaaagaaatatttatcCAAAGACAAAGATaga
attgaatgtttttttttacaaatacgATAGAAATGTTTGGGGGAGGTGGA
CTAGAGCCATTCGAGTTCAGTATTGAGATGAACAAAGAGATTGGTTTGAT
GAGATGGAATGAAAATGAAGGGTGGATTGGTACATACGCCTTATACATCG
CGGGTGGAGATCGACCTGTGACAGAAAGAGAATGTAAAGATCCAAAGATT
GAAAGTGTAAGGTGAGTTATATGAATATGTCAATCTTGCAACCGACTTTC
CATAATCTCGAACTGTTTTCATTTTAGACAAATATGCTTggctttttttt
atctttctatgatttttattttctctaaCTCAAACTTTTCCTGTCTCGAA
TGGCTCCTAGTTTCTTCCTAGCCTTTAAAGGTGGTTCGAAGACTCTTAGA
AACCAAAAGTGTCATTGCTACGATATTATTTTCCTTTAGTTGTAATAATT
TGAAATGGGCGTCCTGCGACAAAGTAGTAGCTTCAGATTTCACGATCACA
GAGAAAAAGACTGGATCCAACCAAGCTCATTTCGAATTCCAGGTAAATGA
ATATATACTGAATATTGTTTCcaggggggtacttaggcaaatagagggta
cggtatgtgccgcccttaacggtaccttttttggacttcaaaagtcccac
taagggtcggaaaaattgaaaaatttcaacttcttacccctgaaagatcg
aaatttggtcaaaatttggtcaagattggtcaaatttgtcccgttAAGGT
TCGTAAAAATTCCAAAACTCtcctttgttttcttctttttagtcccggta
agggtccaaattCGAAAGGCGGGCGGCACctcccgtcagctcgcaacccc
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNccctagtcccccccccccccggggatatTG
TTGTGGATGACTGCAGTTTAGTCACAAAGATTTCTTTAATCACTGTTCAC
TTAGATattaagtttttttcaattaatgAGTCGAATCAGTCAAGCATTTT
TAGTTCTCGAATATTTAATATAAATTATTTCGGTATACTCGGCCCACCTT
CATAATTTAGGGATTATTAAATTTAGTTAATTGATACAAATGATCGATAT
GACATATCCCATCACTTTTAGGTCATTTCACttcaaatgaaaatcaaaag
caAATATCAAGGACGTTTGGTAGCCCTCCAAATGTTATGTGGGATTGAAA
AGGCTTTCATGATCTTCAAGTTTCAAGGAAGGCGGGATTGTAAGCATTTC
TTCAAGTTCAACTGCTCCTAGATCCGGGGGGGGGGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCtaggtccgggggggggg
gtacttaggcaaatggagggtacggtatgtgccgtaTGTGAGGGCACGGt
atatttttggatttccaaagtcccgctaagggtcggaaaaatcagaaaat
aaaatttcagtccaactaagggtaggagaaataggaaaattttttaactt
tttaccaCAAGAAAGatttgtcccggtaagggtcaTCTTGGCCCTAAATA
TTCCCACTACCCCCACTTCATTGTGAAGTGAAAAGGCATTATCGTAAAGT
TGGAGTTTATAGTTATAGTTAGCAACAAACGTCGGGAGGCAAAATGGGAG
GCACGAGCCTTAACAAGCACTCTCTAATCAAAGGATCAATTATTTTAATC
TCCTAAGATACAGTACGTGATTGAGTAACAAATGATTGTGATCTTATCGC
AGTTACTGCATTTGTATATTTATATAACTAGGGTAGATGCAATTATCACA
TATTTTAGATTCGGTAAAAAGGACATTTAGTAAATTCGAGTAAATGTTCA
AAAAGATTTATGTTCAGATAAATACGTTTTTTGATACAAGATACTGTCGT
CATAGCTTcaacataaaataaaaaataaaaaagcttcatTATATTATAGG
TACGAAATGAGGGCTTACTCTCTCTGTCTTCCTTAGACCCAATTCCAGAT
TCACCTGTAGTCATTTCAACAACCGCAACACCAATAACAGATAATTCAAC
AACTCAGCCGCAACCTCCACCCAAAACAACAATACAAGCCTCTGAAACGA
CAACCATGAGTTCTGCAATAACAACAACTTCAGGAAGTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001710XLOC_001710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003083-exon-sc0000025-1491911889:143710..144031TCONS_00003083-exon-sc0000025-1491911889:143710..144031Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1510915933:143710..144031TCONS_00003083-exon-sc0000025-1510915933:143710..144031Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1575043694:143710..144031TCONS_00003083-exon-sc0000025-1575043694:143710..144031Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1491911889:144390..144565TCONS_00003083-exon-sc0000025-1491911889:144390..144565Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1510915933:144390..144565TCONS_00003083-exon-sc0000025-1510915933:144390..144565Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1575043694:144390..144565TCONS_00003083-exon-sc0000025-1575043694:144390..144565Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1491911889:144799..144901TCONS_00003083-exon-sc0000025-1491911889:144799..144901Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1510915933:144799..144901TCONS_00003083-exon-sc0000025-1510915933:144799..144901Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1575043694:144799..144901TCONS_00003083-exon-sc0000025-1575043694:144799..144901Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1491911889:145781..145898TCONS_00003083-exon-sc0000025-1491911889:145781..145898Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1510915933:145781..145898TCONS_00003083-exon-sc0000025-1510915933:145781..145898Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1575043694:145781..145898TCONS_00003083-exon-sc0000025-1575043694:145781..145898Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1491911889:146696..146851TCONS_00003083-exon-sc0000025-1491911889:146696..146851Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1510915933:146696..146851TCONS_00003083-exon-sc0000025-1510915933:146696..146851Clytia hemisphaericaexon
TCONS_00003083-exon-sc0000025-1575043694:146696..146851TCONS_00003083-exon-sc0000025-1575043694:146696..146851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:143710..146851 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0605514	0.583516	0	0	0.265197	0	0	0	0	0.244527	0.125223	0	0	0.157244	0	0.0799098	0.0497308	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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