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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003074 ID=TCONS_00003074|Name=TCONS_00003074|organism=Clytia hemisphaerica|type=transcript|length=2145bp
tttcacttgACATGTGTCGACGAGTAAGTAAATTTTGCGACCAATCGGAA
ACGACCTGAAATCTACCCGAGGGTAGGGGacggcgccactctttctccct
ggattgctcctaCTTGCTCCTCCTTGATCGTTCTTTTTAATACCTTTTTG
GTATCTTTGGTATGCCTTGGTCGGGGATTGAACACACGACCTTGTGCACC
GTAGACGAATTCTCAACCATTACATTAAGGTTCGCTACGGATTGTGGTAA
ACTTGACAAGATGttaattttatcttttcttttttattgcagaaaaaaat
caaataattcaaaaataaatattctgATTTGATTTAGCATGTTAATGGTT
TATTAGgaGGATTAGTGTGAAGCAAAAATGCAAATTCTATTTTATATCAT
CATCATTGTCGTTTTGATAGTGAAGGTCTTGTTCTGGACCATCTACGTCT
GTATAAGAAGGAGGCGATTGCAACGACAACGTGACAGTTCTAGCAGCTCA
GCAGTCGAAACATGTTACGAAGAAGTTCCTGCCGTGCCTCAACCGGCGTA
CGTTTTTAGTGGACTATCACCGGACGATTTAAGACATGCCGTATTAATAG
AATCACTACCCGGTTATCAGCATGATGATCCTTATAAAACAGACTGCCCG
CCCCCTACGTATGATCAGAGTTTTCATGCAGAAAGAGACAGTAATGGGCA
AGGGGCGTCGAGCAGTCGGCAAGGGGCGTTAGATGAACTAGTAGATACAA
TAGAGACGACGGACACCGCCCATCTAATGGATAATCAAGAAGATGATGAT
TATATTTGTTTACAGCAAATGTCTTGAATTCCGACCTTATCGATAAAAAA
TGCCCGCCCGTCCACCCTTGATGAGATATAAACCGCCCGTCAGAAAGTAA
GATGGGCGTCGCTGTTTAAAAGCATCTCTCCGATGAAGAATCAAATATCA
TGATGGTTGGTCGTTTTATCTAGATAGAATTGTACGGCTTAGAATAGGAA
ATATTACCGGCTGGTATGTTTTATTCTTTCAATGGACATAAATGAATGTA
TTTGGTTTGTTTGTCAGCTAGAGAATTTATAAACGATTTCTGGGAGTGTA
GAAAGGATAATGTGAGTGATGGATGGTGGATTGGAGAAAATTATTAGAAT
CAAAATCAAACTTCTGGTCGAAAAAAAAACTGTCCCTGACAGGCCTTCTA
CTTTCTTTTTCGGCTTTGGAAACAaacttaaaaagctttttttcaaTCTA
ACAGAAAGGCTGTAAAAGAATTTCAATcctaataattttttgaaattgaa
tccTTGGTTGAATAAATATGGACTCACTTGGAAAGTGTTGAGACATTTTT
ATCGCAATTTGGCTTTTTTGGTATATTACCATATCATAATTTGTTTTTCG
AGTTTCTCATCTAAAATGTTTCGTTGAAGTAGATAgggatataaaaaaaa
tttcttgttcaatatttcaaatttataaagattctAATCGTACTAAACGA
AAGTTTTTTGCAgatgaaaatatcaaagatggtattttgaagtttttctc
gCGGGGAATCTTGCCCTAAAACCCTTAATATTTCccttttcgaagaaaaa
aagagGTGATATTCCAAATTTAATATTGTTGTAAATAACATTTATAATGA
GAAACAGaggtgtagaaagttttattttttttattttaaataattttttg
gtttctttttcaaaattatactaCACTTGTTGCCAGTTACCAAGATGTTT
CAGTAATTTGCAACTTCTGAGAAGGAGACCTACTCCCACGCAGGAATATC
TAATATCCCGtggaaaaaaaactaaattattttttgaacacGGTGAACTC
TAAAATTTGGGTTAACTTGAAGTAATCATTTTTTGTATGAATATTCTTGC
AGGTATttagaaatttgcaaaaatacttCACATACGGAAAGAAATCTAAC
CTTAACAAACTGTATTTTgagttatcttttcaacaacGAAGAGTTTGGCT
AATACAGGCTAGTCTTGGTTTTCCGAAAAAACAGTGTAATAGaaattttg
aatgataaatAAGGCTTTGTAAATAGTATTATTCTTTGTGTATAATATTG
ATATGGTAATCAATCAAAACTTTTCGCGCTTCAATTACAAATCTA Run BLAST on NCBI protein sequence of TCONS_00003074-protein >TCONS_00003074-protein ID=TCONS_00003074-protein|Name=TCONS_00003074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MQILFYIIIIVVLIVKVLFWTIYVCIRRRRLQRQRDSSSSSAVETCYEEV
PAVPQPAYVFSGLSPDDLRHAVLIESLPGYQHDDPYKTDCPPPTYDQSFH
AERDSNGQGASSSRQGALDELVDTIETTDTAHLMDNQEDDDYICLQQMS Run BLAST on NCBI transcript from alignment at sc0000025:51680..54664+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003074 ID=TCONS_00003074|Name=TCONS_00003074|organism=Clytia hemisphaerica|type=transcript|length=2985bp|location=Sequence derived from alignment at sc0000025:51680..54664+ (Clytia hemisphaerica)
tttcacttgACATGTGTCGACGAGTAAGTAAATTTTGCGACCAATCGGAA
ACGACCTGAAATCTACCCGAGGGTAGGGGacggcgccactctttctccct
ggattgctcctaCTTGCTCCTCCTTGATCGTTCTTTTTAATACCTTTTTG
GTATCTTTGGTATGCCTTGGTCGGGGATTGAACACACGACCTTGTGCACC
GTAGACGAATTCTCAACCATTACATTAAGGTTCGCTACGGATTGTGGTAA
ACTTGACAAGATGttaattttatcttttcttttttattgcagaaaaaaat
caaataattcaaaaataaatattctgATTTGATTTAGCATGTTAATGGTT
TATTAGGTAAGCTAACTATTTCAGCAATTACAATACTAGCATTGACGACT
ATTTTTATCTTAGAATGTCCgtaaatgtcttatttttatATTCAGATGTC
CGAATTTATCTTTGTTTTCATAGGGAGAGAGTGGTTAATTCCATCATTCG
AAATATCAGttagggaaaatattttgaaaatcttctcTGTATCCAGAAAT
AGAAACCATTTTGTACTCTACACAAAGCCCACGCTACTCTTACTATTTAT
ATcgctttgtttttcttttactcTTGGTATATCtagttttttgtaaaata
atttgCTGGCcttaaaatgatatttttctcTCGCTGTTAACGTGTTATtt
acattttaatattttaggaGGATTAGTGTGAAGCAAAAATGCAAATTCTA
TTTTATATGTAAGTaattgctaaatttcaaccacCAAGCTATTGCCAAAT
TCTACCTGCTCAAGTTTTTTCCGCGACtttctttattagaacctaTTACA
TTGTTCATTAATTTGacaatttttatcaatttttcaatatggttaaaaga
aatTTATGTGAAGTTGATAGGGAGAAGAAAGTGAAagaaatttcatgatt
tttctttcTATAAGATCTGTCCAAACTGAGGAAATTTTACTGATTTAtat
atatttatattatatttctttTCCACCTCTAGCATCATCATTGTCGTTTT
GATAGTGAAGGTCTTGTTCTGGACCATCTACGTCTGTATAAGAAGGAGGC
GATTGCAACGACAACGTGACAGTTCTAGCGTAAGTTTACCAATAATTCTC
AAAAGGAGGAAGTTGTTAATAATTTTTCTCTACGGGCCTTAGATCAAAAC
ATGGcaactattttttgaaaatatttctcccAGGACACGCTTATTACCTC
Cgctgtttattaattttcaaggaaatattttccaaattttcatattggtc
ttagtttttttttatttttccctttCTTTTATAGAGCTCAGCAGTCGAAA
CATGTTACGAAGAAGTTCCTGCCGTGCCTCAACCGGCGTACGTTTTTAGT
GGACTATCACCGGACGATTTAAGACATGCCGTATTAATAGAATCACTACC
CGGTTATCAGCATGATGATCCTTATAAAACAGACTGCCCGCCCCCTACGT
ATGATCAGAGTTTTCATGCAGAAAGAGACAGTAATGGGCAAGGGGCGTCG
AGCAGTCGGCAAGGGGCGTTAGATGAACTAGTAGATACAATAGAGACGAC
GGACACCGCCCATCTAATGGATAATCAAGAAGATGATGATTATATTTGTT
TACAGCAAATGTCTTGAATTCCGACCTTATCGATAAAAAATGCCCGCCCG
TCCACCCTTGATGAGATATAAACCGCCCGTCAGAAAGTAAGATGGGCGTC
GCTGTTTAAAAGCATCTCTCCGATGAAGAATCAAATATCATGATGGTTGG
TCGTTTTATCTAGATAGAATTGTACGGCTTAGAATAGGAAATATTACCGG
CTGGTATGTTTTATTCTTTCAATGGACATAAATGAATGTATTTGGTTTGT
TTGTCAGCTAGAGAATTTATAAACGATTTCTGGGAGTGTAGAAAGGATAA
TGTGAGTGATGGATGGTGGATTGGAGAAAATTATTAGAATCAAAATCAAA
CTTCTGGTCGAAAAAAAAACTGTCCCTGACAGGCCTTCTACTTTCTTTTT
CGGCTTTGGAAACAaacttaaaaagctttttttcaaTCTAACAGAAAGGC
TGTAAAAGAATTTCAATcctaataattttttgaaattgaatccTTGGTTG
AATAAATATGGACTCACTTGGAAAGTGTTGAGACATTTTTATCGCAATTT
GGCTTTTTTGGTATATTACCATATCATAATTTGTTTTTCGAGTTTCTCAT
CTAAAATGTTTCGTTGAAGTAGATAgggatataaaaaaaatttcttgttc
aatatttcaaatttataaagattctAATCGTACTAAACGAAAGTTTTTTG
CAgatgaaaatatcaaagatggtattttgaagtttttctcgCGGGGAATC
TTGCCCTAAAACCCTTAATATTTCccttttcgaagaaaaaaagagGTGAT
ATTCCAAATTTAATATTGTTGTAAATAACATTTATAATGAGAAACAGagg
tgtagaaagttttattttttttattttaaataattttttggtttcttttt
caaaattatactaCACTTGTTGCCAGTTACCAAGATGTTTCAGTAATTTG
CAACTTCTGAGAAGGAGACCTACTCCCACGCAGGAATATCTAATATCCCG
tggaaaaaaaactaaattattttttgaacacGGTGAACTCTAAAATTTGG
GTTAACTTGAAGTAATCATTTTTTGTATGAATATTCTTGCAGGTATttag
aaatttgcaaaaatacttCACATACGGAAAGAAATCTAACCTTAACAAAC
TGTATTTTgagttatcttttcaacaacGAAGAGTTTGGCTAATACAGGCT
AGTCTTGGTTTTCCGAAAAAACAGTGTAATAGaaattttgaatgataaat
AAGGCTTTGTAAATAGTATTATTCTTTGTGTATAATATTGATATGGTAAT
CAATCAAAACTTTTCGCGCTTCAATTACAAATCTA Coding sequence (CDS) from alignment at sc0000025:51680..54664+ >TCONS_00003074 ID=TCONS_00003074|Name=TCONS_00003074|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000025:51680..54664+ (Clytia hemisphaerica)
ATGCAAATTCTATTTTATATCATCATCATTGTCGTTTTGATAGTGAAGGT
CTTGTTCTGGACCATCTACGTCTGTATAAGAAGGAGGCGATTGCAACGAC
AACGTGACAGTTCTAGCAGCTCAGCAGTCGAAACATGTTACGAAGAAGTT
CCTGCCGTGCCTCAACCGGCGTACGTTTTTAGTGGACTATCACCGGACGA
TTTAAGACATGCCGTATTAATAGAATCACTACCCGGTTATCAGCATGATG
ATCCTTATAAAACAGACTGCCCGCCCCCTACGTATGATCAGAGTTTTCAT
GCAGAAAGAGACAGTAATGGGCAAGGGGCGTCGAGCAGTCGGCAAGGGGC
GTTAGATGAACTAGTAGATACAATAGAGACGACGGACACCGCCCATCTAA
TGGATAATCAAGAAGATGATGATTATATTTGTTTACAGCAAATGTCTTGA
ATGCAAATTCTATTTTATATCATCATCATTGTCGTTTTGATAGTGAAGGT
CTTGTTCTGGACCATCTACGTCTGTATAAGAAGGAGGCGATTGCAACGAC
AACGTGACAGTTCTAGCAGCTCAGCAGTCGAAACATGTTACGAAGAAGTT
CCTGCCGTGCCTCAACCGGCGTACGTTTTTAGTGGACTATCACCGGACGA
TTTAAGACATGCCGTATTAATAGAATCACTACCCGGTTATCAGCATGATG
ATCCTTATAAAACAGACTGCCCGCCCCCTACGTATGATCAGAGTTTTCAT
GCAGAAAGAGACAGTAATGGGCAAGGGGCGTCGAGCAGTCGGCAAGGGGC
GTTAGATGAACTAGTAGATACAATAGAGACGACGGACACCGCCCATCTAA
TGGATAATCAAGAAGATGATGATTATATTTGTTTACAGCAAATGTCTTGA
ATGCAAATTCTATTTTATATCATCATCATTGTCGTTTTGATAGTGAAGGT
CTTGTTCTGGACCATCTACGTCTGTATAAGAAGGAGGCGATTGCAACGAC
AACGTGACAGTTCTAGCAGCTCAGCAGTCGAAACATGTTACGAAGAAGTT
CCTGCCGTGCCTCAACCGGCGTACGTTTTTAGTGGACTATCACCGGACGA
TTTAAGACATGCCGTATTAATAGAATCACTACCCGGTTATCAGCATGATG
ATCCTTATAAAACAGACTGCCCGCCCCCTACGTATGATCAGAGTTTTCAT
GCAGAAAGAGACAGTAATGGGCAAGGGGCGTCGAGCAGTCGGCAAGGGGC
GTTAGATGAACTAGTAGATACAATAGAGACGACGGACACCGCCCATCTAA
TGGATAATCAAGAAGATGATGATTATATTTGTTTACAGCAAATGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003074-exon-sc0000025-1491911889:51680..52035 | TCONS_00003074-exon-sc0000025-1491911889:51680..52035 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1510915933:51680..52035 | TCONS_00003074-exon-sc0000025-1510915933:51680..52035 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1575043694:51680..52035 | TCONS_00003074-exon-sc0000025-1575043694:51680..52035 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1491911889:52397..52437 | TCONS_00003074-exon-sc0000025-1491911889:52397..52437 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1510915933:52397..52437 | TCONS_00003074-exon-sc0000025-1510915933:52397..52437 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1575043694:52397..52437 | TCONS_00003074-exon-sc0000025-1575043694:52397..52437 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1491911889:52712..52808 | TCONS_00003074-exon-sc0000025-1491911889:52712..52808 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1510915933:52712..52808 | TCONS_00003074-exon-sc0000025-1510915933:52712..52808 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1575043694:52712..52808 | TCONS_00003074-exon-sc0000025-1575043694:52712..52808 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1491911889:53014..54664 | TCONS_00003074-exon-sc0000025-1491911889:53014..54664 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1510915933:53014..54664 | TCONS_00003074-exon-sc0000025-1510915933:53014..54664 | Clytia hemisphaerica | exon |
| TCONS_00003074-exon-sc0000025-1575043694:53014..54664 | TCONS_00003074-exon-sc0000025-1575043694:53014..54664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:51680..54664 + |
Blast
The following BLAST results are available for this feature:
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