TCONS_00003072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003072
Unique NameTCONS_00003072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003072 ID=TCONS_00003072|Name=TCONS_00003072|organism=Clytia hemisphaerica|type=transcript|length=343bp
AAAGAAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCCCTCA
TCGATGCAGGTGTGAAAATATAATCAATCTTGAAGATGTTACTCAAAACG
AACCTCCATCTTTAACTATAACATGTGATAATTGTCAAAGAAGTGAAACA
ATTCGTCCTGTTTATGTCACTGGTGATCCGCGCAATATCGCTCTTATAGG
ACATTGGGATGGATGGCAAACAGGTTTTGGTAGAGGATATTTAAAAGGCT
CAGGTTCCATAGAGCTTACCATTGCCAATATGAGAAAAAAGGAAcgcttt
aaaaatgaaaatgtatttGTGTCATCATTTGTGCCAGAGCACA
Run BLAST on NCBI

protein sequence of TCONS_00003072-protein

>TCONS_00003072-protein ID=TCONS_00003072-protein|Name=TCONS_00003072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
KEVKWFWDPNSIWALPHRCRCENIINLEDVTQNEPPSLTITCDNCQRSET
IRPVYVTGDPRNIALIGHWDGWQTGFGRGYLKGSGSIELTIANMRKKERF
KNENVFVSSFVPEH
Run BLAST on NCBI

transcript from alignment at sc0000025:17289..18122+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003072 ID=TCONS_00003072|Name=TCONS_00003072|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at sc0000025:17289..18122+ (Clytia hemisphaerica)
AAAGAAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCCCTCA
TCGATGCAGGTGTGAAAATATAATCAATCTTGAAGATGTTACTCAAAACG
AACCTCCATCTTTAACTATAACATGTGATAATTGTCAAAGAAGTGAAACA
ATTCGTCCTGTTTATGTCACTGGTGATCCGCGCAATATCGCTCTTATAGG
ACATTGGGATGGATGGCAAACAGGTTTTGGTAGAGGATATTTAAAAGGCT
CAGGTAAATTTGTtcttattcttacttttttgtaaGATGATATCTTTTAA
ACAAAGAAAGAGAGATGAGAGTTTCAAAAGAATGCTATATTAGCTTAGTC
GCAAACATTCAATTAAAGcatatttaataaaaaagaacaaaattacAGTT
TTCGAAAAACTTTGAGTCTCAGAACTGTTCTTAGATTGTTTTTTTAGGCC
ATTTTGAGCCTTGTTGTTGTATAGGAAAGGTTGTACTCTCATGTGCCGAA
TAAACAGACTATAGATAAATTGGGAGGTTGATTCAGCACATGTAGAGAGT
ACGAGTAACTTTAATATCAAtggtattttgaaaattttaaatggtATATA
GAATGAACCTGAAATTTGGACAAAGTATTATCTTAAAATCCACCTGATGT
AACTTAAACTTGGTTCAATAAagtgatcaaaattttaaacaaacattttt
acaGTTAGTATTATCTTTTATGCAAATGATAATCTTTTTCTTAGGTTCCA
TAGAGCTTACCATTGCCAATATGAGAAAAAAGGAAcgctttaaaaatgaa
aatgtatttGTGTCATCATTTGTGCCAGAGCACA

Coding sequence (CDS) from alignment at sc0000025:17289..18122+

>TCONS_00003072 ID=TCONS_00003072|Name=TCONS_00003072|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000025:17289..18122+ (Clytia hemisphaerica)
AAAGAAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCCCTCA
TCGATGCAGGTGTGAAAATATAATCAATCTTGAAGATGTTACTCAAAACG
AACCTCCATCTTTAACTATAACATGTGATAATTGTCAAAGAAGTGAAACA
ATTCGTCCTGTTTATGTCACTGGTGATCCGCGCAATATCGCTCTTATAGG
ACATTGGGATGGATGGCAAACAGGTTTTGGTAGAGGATATTTAAAAGGCT
CAGGTTCCATAGAGCTTACCATTGCCAATATGAGAAAAAAGGAAcgcttt
aaaaatgaaaatgtatttGTGTCATCATTTGTGCCAGAGCACAAAGAAGT
GAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCCCTCATCGATGCA
GGTGTGAAAATATAATCAATCTTGAAGATGTTACTCAAAACGAACCTCCA
TCTTTAACTATAACATGTGATAATTGTCAAAGAAGTGAAACAATTCGTCC
TGTTTATGTCACTGGTGATCCGCGCAATATCGCTCTTATAGGACATTGGG
ATGGATGGCAAACAGGTTTTGGTAGAGGATATTTAAAAGGCTCAGGTTCC
ATAGAGCTTACCATTGCCAATATGAGAAAAAAGGAAcgctttaaaaatga
aaatgtatttGTGTCATCATTTGTGCCAGAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001703XLOC_001703Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003072-proteinTCONS_00003072-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003072-exon-sc0000025-1491911889:17289..17541TCONS_00003072-exon-sc0000025-1491911889:17289..17541Clytia hemisphaericaexon
TCONS_00003072-exon-sc0000025-1510915933:17289..17541TCONS_00003072-exon-sc0000025-1510915933:17289..17541Clytia hemisphaericaexon
TCONS_00003072-exon-sc0000025-1575043694:17289..17541TCONS_00003072-exon-sc0000025-1575043694:17289..17541Clytia hemisphaericaexon
TCONS_00003072-exon-sc0000025-1491911889:18033..18122TCONS_00003072-exon-sc0000025-1491911889:18033..18122Clytia hemisphaericaexon
TCONS_00003072-exon-sc0000025-1510915933:18033..18122TCONS_00003072-exon-sc0000025-1510915933:18033..18122Clytia hemisphaericaexon
TCONS_00003072-exon-sc0000025-1575043694:18033..18122TCONS_00003072-exon-sc0000025-1575043694:18033..18122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:17289..18122 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.873748	1.48337	0.654081	0	3.9754	0.212232	1.86024	3.73666	0.056713	2.79977	0.111398	0.867483	2.0761	0.336344	2.60578	2.65842	3.89054	0.905762	3.40977	2.90467	0.915395	1.06097	1.56231	1.08996	0.156865	0	3.40185	2.23591	4.6177	3.64305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top