TCONS_00003071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003071
Unique NameTCONS_00003071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003071 ID=TCONS_00003071|Name=TCONS_00003071|organism=Clytia hemisphaerica|type=transcript|length=532bp
GAAAAATTGCTTAATGTTTTGTATTTACAGTATATATTCAAGCACCAAAA
AATCTATACTTTCATAAAATTATCTCATTGTTAAGCTGTCTAAGCCCACC
CAATCACATAAAAAAATGCAGTAAGGGGAAGATTACAAATTTTCCTGTGT
GGAGGTCCAAGTCAAGCTACATACCTCCTTTGATTCTGCTTCCCTCAAGT
TCAGAAAATTGATAGATTCGCTGTCAAGAAAGCTCTGAGCAAAGTTGTGG
AAGGTGTGTGTCTATCTGTTCAAGAAGTTTGAGTTTTTCCTTTCTGTTCA
CAATTTTGTTGATTTGACATGTTTCTTCTCTCCAGTTGAAGTGGTAAAGA
AAGGTTCTGATCCGAGAGAAGCCTCGTGTATAACAAAAATACTTCACAGA
ACAGCCGGAATTATAAGAATTCCCAAGCAACTTTCGTTCCGTGATCTACC
ATATATTGATTACGTAATgttagaatgtttttattcttcGTCTACCGGCA
TCCATAAGGCCGGCAAATTGTCGGCAAATTAC
Run BLAST on NCBI

transcript from alignment at sc0000024:1006978..1007509

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003071 ID=TCONS_00003071|Name=TCONS_00003071|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000024:1006978..1007509 (Clytia hemisphaerica)
GTAATTTGCCGACAATTTGCCGGCCTTATGGATGCCGGTAGACgaagaat
aaaaacattctaacATTACGTAATCAATATATGGTAGATCACGGAACGAA
AGTTGCTTGGGAATTCTTATAATTCCGGCTGTTCTGTGAAGTATTTTTGT
TATACACGAGGCTTCTCTCGGATCAGAACCTTTCTTTACCACTTCAACTG
GAGAGAAGAAACATGTCAAATCAACAAAATTGTGAACAGAAAGGAAAAAC
TCAAACTTCTTGAACAGATAGACACACACCTTCCACAACTTTGCTCAGAG
CTTTCTTGACAGCGAATCTATCAATTTTCTGAACTTGAGGGAAGCAGAAT
CAAAGGAGGTATGTAGCTTGACTTGGACCTCCACACAGGAAAATTTGTAA
TCTTCCCCTTACTGCATTTTTTTATGTGATTGGGTGGGCTTAGACAGCTT
AACAATGAGATAATTTTATGAAAGTATAGATTTTTTGGTGCTTGAATATA
TACTGTAAATACAAAACATTAAGCAATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001702XLOC_001702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003071-exon-sc0000024-1491911889:1006978..1007509TCONS_00003071-exon-sc0000024-1491911889:1006978..1007509Clytia hemisphaericaexon
TCONS_00003071-exon-sc0000024-1510915933:1006978..1007509TCONS_00003071-exon-sc0000024-1510915933:1006978..1007509Clytia hemisphaericaexon
TCONS_00003071-exon-sc0000024-1575043694:1006978..1007509TCONS_00003071-exon-sc0000024-1575043694:1006978..1007509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:1006978..1007509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02789	1.46874	1.8559	0.876875	18.3672	18.7278	8.61408	10.3118	10.0354	16.1049	9.46081	6.36514	7.00116	9.40248	11.4104	11.343	12.5647	9.68596	3.1685	5.54083	10.2154	11.5769	3.11638	4.60785	4.12749	3.36795	8.71278	3.19659	7.47254	5.53505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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