TCONS_00003068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003068
Unique NameTCONS_00003068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003068 ID=TCONS_00003068|Name=TCONS_00003068|organism=Clytia hemisphaerica|type=transcript|length=295bp
GAGAATGGGATGGTTTGGTGAATAATGTGCTTAGATAATCAGCTGATAGT
TTATTATTTACATGTTTATGTATTAGTTTACCACACTCTAATTTATATAG
TGAATTTATCTTTAATGTGCTAAACCTGtttagattatttttttcataga
ttttatttattttatttgttatgCTATCTATCACAGAATTTAACTTACCT
GTTCCCTTTGTATTTGGGGAGCCCCAAGATGTAATACAATATGCTAGGTG
TGAATTTATAAATGCATAATACAGAGAAGAGATATTAGAAGGTGA
Run BLAST on NCBI

transcript from alignment at sc0000024:939719..940013

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003068 ID=TCONS_00003068|Name=TCONS_00003068|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0000024:939719..940013 (Clytia hemisphaerica)
TCACCTTCTAATATCTCTTCTCTGTATTATGCATTTATAAATTCACACCT
AGCATATTGTATTACATCTTGGGGCTCCCCAAATACAAAGGGAACAGGTA
AGTTAAATTCTGTGATAGATAGcataacaaataaaataaataaaatctat
gaaaaaaataatctaaaCAGGTTTAGCACATTAAAGATAAATTCACTATA
TAAATTAGAGTGTGGTAAACTAATACATAAACATGTAAATAATAAACTAT
CAGCTGATTATCTAAGCACATTATTCACCAAACCATCCCATTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001699XLOC_001699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003068-exon-sc0000024-1491911889:939719..940013TCONS_00003068-exon-sc0000024-1491911889:939719..940013Clytia hemisphaericaexon
TCONS_00003068-exon-sc0000024-1510915933:939719..940013TCONS_00003068-exon-sc0000024-1510915933:939719..940013Clytia hemisphaericaexon
TCONS_00003068-exon-sc0000024-1575043694:939719..940013TCONS_00003068-exon-sc0000024-1575043694:939719..940013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:939719..940013 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.13377	1.87278	0	0	2.28026	0.902594	0.670381	0.416949	1.28844	0	0	2.17944	1.45508	0.62774	0	0	1.18885	2.7384	0	0.957697	4.44068	0	0	2.6009	2.49993	0.960925	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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