TCONS_00003067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003067
Unique NameTCONS_00003067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003067 ID=TCONS_00003067|Name=TCONS_00003067|organism=Clytia hemisphaerica|type=transcript|length=320bp
CTCTGAGTCAGAAGTGAGTTGTGGCATTTCTTCTTCTACCGTCAGTGACG
CGAAGGTGCTGGAAGTACTGGTTGGCTGTGTTTGACGTGTTGGTGCTGTT
GACGACTTGGTAGCAGCTGTGTTTTGAGAAGGGTAATATTCCTTGATGTG
TGATGCGTGTCTGCAGTAGGTTTTCTTCCCATTGGATATGGTGATGCCAC
TGTGATGAACGCGAACAATTTTGTACGGAGTGGTCTCATAGTATGGCTGG
GACTTGCTACGTCGAAGGAGGTTCTTGCATAAGACAAGTTGCCCAGGCTG
AAGGTTGTGATGGTGAGCAC
Run BLAST on NCBI

protein sequence of TCONS_00003067-protein

>TCONS_00003067-protein ID=TCONS_00003067-protein|Name=TCONS_00003067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
AHHHNLQPGQLVLCKNLLRRSKSQPYYETTPYKIVRVHHSGITISNGKKT
YCRHASHIKEYYPSQNTAATKSSTAPTRQTQPTSTSSTFASLTVEEEMPQ
LTSDSE
Run BLAST on NCBI

transcript from alignment at sc0000024:937541..937860

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003067 ID=TCONS_00003067|Name=TCONS_00003067|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0000024:937541..937860 (Clytia hemisphaerica)
GTGCTCACCATCACAACCTTCAGCCTGGGCAACTTGTCTTATGCAAGAAC
CTCCTTCGACGTAGCAAGTCCCAGCCATACTATGAGACCACTCCGTACAA
AATTGTTCGCGTTCATCACAGTGGCATCACCATATCCAATGGGAAGAAAA
CCTACTGCAGACACGCATCACACATCAAGGAATATTACCCTTCTCAAAAC
ACAGCTGCTACCAAGTCGTCAACAGCACCAACACGTCAAACACAGCCAAC
CAGTACTTCCAGCACCTTCGCGTCACTGACGGTAGAAGAAGAAATGCCAC
AACTCACTTCTGACTCAGAG

Coding sequence (CDS) from alignment at sc0000024:937541..937860

>TCONS_00003067 ID=TCONS_00003067|Name=TCONS_00003067|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000024:937541..937860 (Clytia hemisphaerica)
GCTCACCATCACAACCTTCAGCCTGGGCAACTTGTCTTATGCAAGAACCT
CCTTCGACGTAGCAAGTCCCAGCCATACTATGAGACCACTCCGTACAAAA
TTGTTCGCGTTCATCACAGTGGCATCACCATATCCAATGGGAAGAAAACC
TACTGCAGACACGCATCACACATCAAGGAATATTACCCTTCTCAAAACAC
AGCTGCTACCAAGTCGTCAACAGCACCAACACGTCAAACACAGCCAACCA
GTACTTCCAGCACCTTCGCGTCACTGACGGTAGAAGAAGAAATGCCACAA
CTCACTTCTGACTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001698XLOC_001698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003067-exon-sc0000024-1491911889:937541..937860TCONS_00003067-exon-sc0000024-1491911889:937541..937860Clytia hemisphaericaexon
TCONS_00003067-exon-sc0000024-1510915933:937541..937860TCONS_00003067-exon-sc0000024-1510915933:937541..937860Clytia hemisphaericaexon
TCONS_00003067-exon-sc0000024-1575043694:937541..937860TCONS_00003067-exon-sc0000024-1575043694:937541..937860Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003067-proteinTCONS_00003067-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:937541..937860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.326752	6.62419	6.2805	6.16488	4.65904	0.699361	0.995068	0.565389	1.08821	0	0.494131	0	0	0	0	0	0.37582	0	0	0	0	2.17716	1.2249	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top