TCONS_00003066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003066
Unique NameTCONS_00003066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003066 ID=TCONS_00003066|Name=TCONS_00003066|organism=Clytia hemisphaerica|type=transcript|length=1230bp
TACGATTTTGTTTGACTCTTGTAGGTGGCGTCCTTTTGAATGACGTGTTG
ATTTTGGGGTACCGGCTTTGTAAGTGTTGGAAGGTGACTTCTCGGTGTGT
GTTTGTACATTAATAAAGAAGGTGATGCACCTGTAGCAGGGTGAGGCGAG
TTGCGGTAGGATAACAAGAATGAGTCGAGTTGCTTCTTCCAGTCTGTACG
ATTGGCGCTGCATGTTTGAAGGAACTTGCCAAGGGTACGGTTGAATCTTT
CCACTTCACCATTTCCTGCTGCATGGTACGGTAAGACTTTACGGTGGTTG
ATGTTTCTTGACTTGAGGAATTCTTCAAAGTTGGATGCAATGAATTGTGG
TCCAATGAATTGATTCAGGATACCCAAAGATAGCAAAGGTTGACATCAGC
TTTTCAATGATTCGGTCTGATGTGGTGTCTTTGTTGAGAACATGAACAAT
CGGGTACCTGGAGTGGTAGTCAAGGATTACGAGTAATGTGTTCTGATCTG
GAAGCGGTCCTTTGAGATCAATACCGAGTTGCTGCCAAGGTTCTTCTGGT
AATGGTGTTGGTTTTAACGGTTCGGCTTTGCTGTGTTTCGGTATGACGAT
TTGACAGGCATGACATTGTTTGACTAGGTCTTCTACGTGCTGGTTGATCT
TTGGCCACCATACGTGATCTCGGAGGTAAAGCTTTGTTCGCACAATACCT
TGGTGTCCTTGGTGGGCGATGTCGAGAATTTTCCTTTGTAACGACTGAGG
TATGACAATTTGGTTGTTCTTGAGAAGGATGCCATTAGATACAGATAGTT
GATCTCTGATCTTACGGAATGGCGTGATGTCTGGGTTGTTGCTCCAGTTG
TCTCTGATAACGCTGTTGACTACGGTGGACAAGGTTGGATCTGTGGCTGT
CTCCTTTGCGATTTCTGTGATGGAGAGCGATTCTGGGACAGCTTGGCGGG
TGATTGTAGCAATGTGATGGTCTGCAGGATTTTCTTGGTCTGCTGTCTTG
ATGGGGCTACGCGAGAGGATGTCTGCTGCATTCAGTTTACCTGGGATGTA
CGACATTGTGTAGTGGTATGCTTGGAGTCTGAGTAGCCATCTCTGAATAC
GTGGTGTTGGACGTTTTGCCTTGGATGTTAGTAGTGACAGTAGCGGTTTG
TGATCGGTTTCTACGGTAAAGAGTCTATCATATAGATAATAGTGGTAATG
TTCACAAGCCCACATTACGGCAAGGGCTTC
Run BLAST on NCBI

protein sequence of TCONS_00003066-protein

>TCONS_00003066-protein ID=TCONS_00003066-protein|Name=TCONS_00003066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
EALAVMWACEHYHYYLYDRLFTVETDHKPLLSLLTSKAKRPTPRIQRWLL
RLQAYHYTMSYIPGKLNAADILSRSPIKTADQENPADHHIATITRQAVPE
SLSITEIAKETATDPTLSTVVNSVIRDNWSNNPDITPFRKIRDQLSVSNG
ILLKNNQIVIPQSLQRKILDIAHQGHQGIVRTKLYLRDHVWWPKINQHVE
DLVKQCHACQIVIPKHSKAEPLKPTPLPEEPWQQLGIDLKGPLPDQNTLL
VILDYHSRYPIVHVLNKDTTSDRIIEKLMSTFAIFGYPESIHWTTIHCIQ
L
Run BLAST on NCBI

transcript from alignment at sc0000024:936189..937418

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003066 ID=TCONS_00003066|Name=TCONS_00003066|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at sc0000024:936189..937418 (Clytia hemisphaerica)
GAAGCCCTTGCCGTAATGTGGGCTTGTGAACATTACCACTATTATCTATA
TGATAGACTCTTTACCGTAGAAACCGATCACAAACCGCTACTGTCACTAC
TAACATCCAAGGCAAAACGTCCAACACCACGTATTCAGAGATGGCTACTC
AGACTCCAAGCATACCACTACACAATGTCGTACATCCCAGGTAAACTGAA
TGCAGCAGACATCCTCTCGCGTAGCCCCATCAAGACAGCAGACCAAGAAA
ATCCTGCAGACCATCACATTGCTACAATCACCCGCCAAGCTGTCCCAGAA
TCGCTCTCCATCACAGAAATCGCAAAGGAGACAGCCACAGATCCAACCTT
GTCCACCGTAGTCAACAGCGTTATCAGAGACAACTGGAGCAACAACCCAG
ACATCACGCCATTCCGTAAGATCAGAGATCAACTATCTGTATCTAATGGC
ATCCTTCTCAAGAACAACCAAATTGTCATACCTCAGTCGTTACAAAGGAA
AATTCTCGACATCGCCCACCAAGGACACCAAGGTATTGTGCGAACAAAGC
TTTACCTCCGAGATCACGTATGGTGGCCAAAGATCAACCAGCACGTAGAA
GACCTAGTCAAACAATGTCATGCCTGTCAAATCGTCATACCGAAACACAG
CAAAGCCGAACCGTTAAAACCAACACCATTACCAGAAGAACCTTGGCAGC
AACTCGGTATTGATCTCAAAGGACCGCTTCCAGATCAGAACACATTACTC
GTAATCCTTGACTACCACTCCAGGTACCCGATTGTTCATGTTCTCAACAA
AGACACCACATCAGACCGAATCATTGAAAAGCTGATGTCAACCTTTGCTA
TCTTTGGGTATCCTGAATCAATTCATTGGACCACAATTCATTGCATCCAA
CTTTGAAGAATTCCTCAAGTCAAGAAACATCAACCACCGTAAAGTCTTAC
CGTACCATGCAGCAGGAAATGGTGAAGTGGAAAGATTCAACCGTACCCTT
GGCAAGTTCCTTCAAACATGCAGCGCCAATCGTACAGACTGGAAGAAGCA
ACTCGACTCATTCTTGTTATCCTACCGCAACTCGCCTCACCCTGCTACAG
GTGCATCACCTTCTTTATTAATGTACAAACACACACCGAGAAGTCACCTT
CCAACACTTACAAAGCCGGTACCCCAAAATCAACACGTCATTCAAAAGGA
CGCCACCTACAAGAGTCAAACAAAATCGTA

Coding sequence (CDS) from alignment at sc0000024:936189..937418

>TCONS_00003066 ID=TCONS_00003066|Name=TCONS_00003066|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000024:936189..937418 (Clytia hemisphaerica)
GAAGCCCTTGCCGTAATGTGGGCTTGTGAACATTACCACTATTATCTATA
TGATAGACTCTTTACCGTAGAAACCGATCACAAACCGCTACTGTCACTAC
TAACATCCAAGGCAAAACGTCCAACACCACGTATTCAGAGATGGCTACTC
AGACTCCAAGCATACCACTACACAATGTCGTACATCCCAGGTAAACTGAA
TGCAGCAGACATCCTCTCGCGTAGCCCCATCAAGACAGCAGACCAAGAAA
ATCCTGCAGACCATCACATTGCTACAATCACCCGCCAAGCTGTCCCAGAA
TCGCTCTCCATCACAGAAATCGCAAAGGAGACAGCCACAGATCCAACCTT
GTCCACCGTAGTCAACAGCGTTATCAGAGACAACTGGAGCAACAACCCAG
ACATCACGCCATTCCGTAAGATCAGAGATCAACTATCTGTATCTAATGGC
ATCCTTCTCAAGAACAACCAAATTGTCATACCTCAGTCGTTACAAAGGAA
AATTCTCGACATCGCCCACCAAGGACACCAAGGTATTGTGCGAACAAAGC
TTTACCTCCGAGATCACGTATGGTGGCCAAAGATCAACCAGCACGTAGAA
GACCTAGTCAAACAATGTCATGCCTGTCAAATCGTCATACCGAAACACAG
CAAAGCCGAACCGTTAAAACCAACACCATTACCAGAAGAACCTTGGCAGC
AACTCGGTATTGATCTCAAAGGACCGCTTCCAGATCAGAACACATTACTC
GTAATCCTTGACTACCACTCCAGGTACCCGATTGTTCATGTTCTCAACAA
AGACACCACATCAGACCGAATCATTGAAAAGCTGATGTCAACCTTTGCTA
TCTTTGGGTATCCTGAATCAATTCATTGGACCACAATTCATTGCATCCAA
CTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001697XLOC_001697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003066-exon-sc0000024-1491911889:936189..937418TCONS_00003066-exon-sc0000024-1491911889:936189..937418Clytia hemisphaericaexon
TCONS_00003066-exon-sc0000024-1510915933:936189..937418TCONS_00003066-exon-sc0000024-1510915933:936189..937418Clytia hemisphaericaexon
TCONS_00003066-exon-sc0000024-1575043694:936189..937418TCONS_00003066-exon-sc0000024-1575043694:936189..937418Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003066-proteinTCONS_00003066-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:936189..937418 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0676159	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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