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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003065 ID=TCONS_00003065|Name=TCONS_00003065|organism=Clytia hemisphaerica|type=transcript|length=1850bp
ctGGGTAAAAGTTTAGTGTGGtcgcaaaatcaaaacattgaaaactCGCT
TCAGTTTTGGTGGGAAAAGGTGCAATATGGAGTCTCGTGAATATTTTAAA
AGCTTGAAAGTGGTCGAATTAAAGAATTATTTGAGATTGAGAGGATTAAA
AGTATCTGGAGTCAAAGATGATCTTGTAGCAAGAGCTTTTGTTGCTGCTG
AGAACAAGTCTCCCGTCGTGAAAACAGCAGAAGAAGTTCAAAGTGAAATC
AAAACTGAATATGAACAGAAACTTCTTTATGAAGGAAAAACATTACCTGA
CCCTTTTAAGCTTGAAACTGGCTGGCTTAATGAGGAAGATGGTGTTGTTT
TCTGGCCAAAAGTCCCTATGGTATACATCATAAAGTTTTGTATGCTTGAT
GACCAAGCCGAGGACCTCAGTGACTACAAGGCTTCGAAAGGATATAGTTT
TTTCAAGCAAGGCTggttgggaaaacttttttatcaTCCCATTTCAAAGA
CAAGTGACTTTTGTTTCATCAAAGCTGATTGCCGGCGTTCCCAGAAGATT
AACAGTCTAAAACATAACTTATGGATTCTCTTTTCCAAGTTCAAGGGGAG
AGTACTACGTGCTCATTGTACATGTATGGGTGGAATGATTTCTACGTGCA
ACCATGTATCAGCAGCTCTTTTTCGACTAGAGACAGCATTGCGGCTTGGT
CTTTCCAATCCTGCCTGTACTGCTACTCCCAACGATTGGCTACCAAATCG
ATCAGAAGTTACCCCATGTAAAATTTCTAACATGAACTTAAATCGGGACG
ACATCAGAAAGCGTGGAAAAAAGCAGCAGCGCAAGTTGCTGGCTACctca
aagaaaaattataagCCCATTTGTGACGACAATGATGACGgcggaaaaat
tttgaatttcaattcgGTGATTGATTCCCTTGGTGATATGGTCTATGGAA
CCACCCTCTGCATGGCAATCCCTAAACCTGAAATCGATTTTGTTAGGGAG
GTCATATCTAAAAAACCTGTCATTGAAAACCCACCCATCAGTGTGGATGA
TGTGTTGATGATGTCGCagtcaaaaaaggttttttttgaaaatttgaagg
caAATGTTAGTGCGGCATCAGTTGCtacaattgaaaaaataacccatggT
CAAAGTGATAATCCCCTTTGGTATGACTATCGAAAAGGTGTTATCAGTGC
ATCCAAAGTCCATCAAGTGAAGCACCACCAAAATTCACAAGGTCAGAAAT
GGAAGAGCCGGATACATAAACATGTTTACTTTGATTCAGAAAGTATCAGG
AAATGTATTTACCAGTCCAGACTTACCTTCATTAGCTTATGGTAGATCCA
CAGAACCTCTTGCTGCTGAGTGCTTTTTGGATGTTTACAAAAAGTCACAC
AAAAATGTGACAATGAAAGAATGTGGTATTTTTTTGAATGTGGATAATCC
ATTTATTGGTGCAAGCCCTGACGGTATAATTTCCTGTTCATGCCACGAAG
ATGTTTGTTTACAGATAAAATGCCCTTCATCCATAGCCAACCGATGAAAA
AGCAAAGTTGCCTTACATTAAAGATTCTAAATTGAAAGATACTCATGGTT
ATTATTCCCAGTGCCAGCTACAAATGGGTGTAACTGGTTTGAAAAAGTGC
TACTTTTTTGTTTATACAGAACATGGATATCTGATAGACATTATAGAGTT
TGACAaggatttttattttggtttgattAAGGACTGTATTGATTTCTATG
ATCAGTTTTATTTGAAATCACTATTTAAATAAAGTTTCATAGTGTATCTC
AAGAATGTaagctttgtttatttttaggtTGTTTATAAATATATGCCTAA Run BLAST on NCBI protein sequence of TCONS_00003065-protein >TCONS_00003065-protein ID=TCONS_00003065-protein|Name=TCONS_00003065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MESREYFKSLKVVELKNYLRLRGLKVSGVKDDLVARAFVAAENKSPVVKT
AEEVQSEIKTEYEQKLLYEGKTLPDPFKLETGWLNEEDGVVFWPKVPMVY
IIKFCMLDDQAEDLSDYKASKGYSFFKQGWLGKLFYHPISKTSDFCFIKA
DCRRSQKINSLKHNLWILFSKFKGRVLRAHCTCMGGMISTCNHVSAALFR
LETALRLGLSNPACTATPNDWLPNRSEVTPCKISNMNLNRDDIRKRGKKQ
QRKLLATSKKNYKPICDDNDDGGKILNFNSVIDSLGDMVYGTTLCMAIPK
PEIDFVREVISKKPVIENPPISVDDVLMMSQSKKVFFENLKANVSAASVA
TIEKITHGQSDNPLWYDYRKGVISASKVHQVKHHQNSQGQKWKSRIHKHV
YFDSESIRKCIYQSRLTFISLW Run BLAST on NCBI transcript from alignment at sc0000024:930728..932577 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003065 ID=TCONS_00003065|Name=TCONS_00003065|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000024:930728..932577 (Clytia hemisphaerica)
TTAGGCATATATTTATAAACAacctaaaaataaacaaagcttACATTCTT
GAGATACACTATGAAACTTTATTTAAATAGTGATTTCAAATAAAACTGAT
CATAGAAATCAATACAGTCCTTaatcaaaccaaaataaaaatcctTGTCA
AACTCTATAATGTCTATCAGATATCCATGTTCTGTATAAACAAAAAAGTA
GCACTTTTTCAAACCAGTTACACCCATTTGTAGCTGGCACTGGGAATAAT
AACCATGAGTATCTTTCAATTTAGAATCTTTAATGTAAGGCAACTTTGCT
TTTTCATCGGTTGGCTATGGATGAAGGGCATTTTATCTGTAAACAAACAT
CTTCGTGGCATGAACAGGAAATTATACCGTCAGGGCTTGCACCAATAAAT
GGATTATCCACATTCAAAAAAATACCACATTCTTTCATTGTCACATTTTT
GTGTGACTTTTTGTAAACATCCAAAAAGCACTCAGCAGCAAGAGGTTCTG
TGGATCTACCATAAGCTAATGAAGGTAAGTCTGGACTGGTAAATACATTT
CCTGATACTTTCTGAATCAAAGTAAACATGTTTATGTATCCGGCTCTTCC
ATTTCTGACCTTGTGAATTTTGGTGGTGCTTCACTTGATGGACTTTGGAT
GCACTGATAACACCTTTTCGATAGTCATACCAAAGGGGATTATCACTTTG
AccatgggttattttttcaattgtaGCAACTGATGCCGCACTAACATTtg
ccttcaaattttcaaaaaaaaccttttttgactGCGACATCATCAACACA
TCATCCACACTGATGGGTGGGTTTTCAATGACAGGTTTTTTAGATATGAC
CTCCCTAACAAAATCGATTTCAGGTTTAGGGATTGCCATGCAGAGGGTGG
TTCCATAGACCATATCACCAAGGGAATCAATCACcgaattgaaattcaaa
atttttccgcCGTCATCATTGTCGTCACAAATGGGcttataatttttctt
tgagGTAGCCAGCAACTTGCGCTGCTGCTTTTTTCCACGCTTTCTGATGT
CGTCCCGATTTAAGTTCATGTTAGAAATTTTACATGGGGTAACTTCTGAT
CGATTTGGTAGCCAATCGTTGGGAGTAGCAGTACAGGCAGGATTGGAAAG
ACCAAGCCGCAATGCTGTCTCTAGTCGAAAAAGAGCTGCTGATACATGGT
TGCACGTAGAAATCATTCCACCCATACATGTACAATGAGCACGTAGTACT
CTCCCCTTGAACTTGGAAAAGAGAATCCATAAGTTATGTTTTAGACTGTT
AATCTTCTGGGAACGCCGGCAATCAGCTTTGATGAAACAAAAGTCACTTG
TCTTTGAAATGGGAtgataaaaaagttttcccaaccAGCCTTGCTTGAAA
AAACTATATCCTTTCGAAGCCTTGTAGTCACTGAGGTCCTCGGCTTGGTC
ATCAAGCATACAAAACTTTATGATGTATACCATAGGGACTTTTGGCCAGA
AAACAACACCATCTTCCTCATTAAGCCAGCCAGTTTCAAGCTTAAAAGGG
TCAGGTAATGTTTTTCCTTCATAAAGAAGTTTCTGTTCATATTCAGTTTT
GATTTCACTTTGAACTTCTTCTGCTGTTTTCACGACGGGAGACTTGTTCT
CAGCAGCAACAAAAGCTCTTGCTACAAGATCATCTTTGACTCCAGATACT
TTTAATCCTCTCAATCTCAAATAATTCTTTAATTCGACCACTTTCAAGCT
TTTAAAATATTCACGAGACTCCATATTGCACCTTTTCCCACCAAAACTGA
AGCGagttttcaatgttttgattttgcgaCCACACTAAACTTTTACCCag
Coding sequence (CDS) from alignment at sc0000024:930728..932577 >TCONS_00003065 ID=TCONS_00003065|Name=TCONS_00003065|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000024:930728..932577 (Clytia hemisphaerica)
CTACCATAAGCTAATGAAGGTAAGTCTGGACTGGTAAATACATTTCCTGA
TACTTTCTGAATCAAAGTAAACATGTTTATGTATCCGGCTCTTCCATTTC
TGACCTTGTGAATTTTGGTGGTGCTTCACTTGATGGACTTTGGATGCACT
GATAACACCTTTTCGATAGTCATACCAAAGGGGATTATCACTTTGAccat
gggttattttttcaattgtaGCAACTGATGCCGCACTAACATTtgccttc
aaattttcaaaaaaaaccttttttgactGCGACATCATCAACACATCATC
CACACTGATGGGTGGGTTTTCAATGACAGGTTTTTTAGATATGACCTCCC
TAACAAAATCGATTTCAGGTTTAGGGATTGCCATGCAGAGGGTGGTTCCA
TAGACCATATCACCAAGGGAATCAATCACcgaattgaaattcaaaatttt
tccgcCGTCATCATTGTCGTCACAAATGGGcttataatttttctttgagG
TAGCCAGCAACTTGCGCTGCTGCTTTTTTCCACGCTTTCTGATGTCGTCC
CGATTTAAGTTCATGTTAGAAATTTTACATGGGGTAACTTCTGATCGATT
TGGTAGCCAATCGTTGGGAGTAGCAGTACAGGCAGGATTGGAAAGACCAA
GCCGCAATGCTGTCTCTAGTCGAAAAAGAGCTGCTGATACATGGTTGCAC
GTAGAAATCATTCCACCCATACATGTACAATGAGCACGTAGTACTCTCCC
CTTGAACTTGGAAAAGAGAATCCATAAGTTATGTTTTAGACTGTTAATCT
TCTGGGAACGCCGGCAATCAGCTTTGATGAAACAAAAGTCACTTGTCTTT
GAAATGGGAtgataaaaaagttttcccaaccAGCCTTGCTTGAAAAAACT
ATATCCTTTCGAAGCCTTGTAGTCACTGAGGTCCTCGGCTTGGTCATCAA
GCATACAAAACTTTATGATGTATACCATAGGGACTTTTGGCCAGAAAACA
ACACCATCTTCCTCATTAAGCCAGCCAGTTTCAAGCTTAAAAGGGTCAGG
TAATGTTTTTCCTTCATAAAGAAGTTTCTGTTCATATTCAGTTTTGATTT
CACTTTGAACTTCTTCTGCTGTTTTCACGACGGGAGACTTGTTCTCAGCA
GCAACAAAAGCTCTTGCTACAAGATCATCTTTGACTCCAGATACTTTTAA
TCCTCTCAATCTCAAATAATTCTTTAATTCGACCACTTTCAAGCTTTTAA
AATATTCACGAGACTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003065-exon-sc0000024-1491911889:930728..932577 | TCONS_00003065-exon-sc0000024-1491911889:930728..932577 | Clytia hemisphaerica | exon |
| TCONS_00003065-exon-sc0000024-1510915933:930728..932577 | TCONS_00003065-exon-sc0000024-1510915933:930728..932577 | Clytia hemisphaerica | exon |
| TCONS_00003065-exon-sc0000024-1575043694:930728..932577 | TCONS_00003065-exon-sc0000024-1575043694:930728..932577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:930728..932577 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
Blast
The following BLAST results are available for this feature:
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