TCONS_00003062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003062
Unique NameTCONS_00003062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003062 ID=TCONS_00003062|Name=TCONS_00003062|organism=Clytia hemisphaerica|type=transcript|length=324bp
ATGTACGGTAAGTCTCCCAACGACGTTGAAAAGCGTTCCAGTCTTCATTG
GTGCAGTTGAGCTGTAGCTTTGGACGGTCAAGTTTCGGGCCTCTTACGGG
AGGAGCTGCTGGTTGCGGTACTACCATGTGTGTGTATGTGTGAGCGTTCA
AGATTGCTGCAGCCCCAACTACATCGACATCATCAGTGGCGAACCCACAA
CCAGGGATTGGGCAATTCAAAACAGTCATGATGCAGTGATAAGGATCAAA
ACATGGATAAAAGTATCATTCAGTTAATTTCTATTTAGCATAACGAATGT
ATTGATCTAAACGATAAGATAAAT
Run BLAST on NCBI

transcript from alignment at sc0000024:901402..901725

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003062 ID=TCONS_00003062|Name=TCONS_00003062|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0000024:901402..901725 (Clytia hemisphaerica)
ATTTATCTTATCGTTTAGATCAATACATTCGTTATGCTAAATAGAAATTA
ACTGAATGATACTTTTATCCATGTTTTGATCCTTATCACTGCATCATGAC
TGTTTTGAATTGCCCAATCCCTGGTTGTGGGTTCGCCACTGATGATGTCG
ATGTAGTTGGGGCTGCAGCAATCTTGAACGCTCACACATACACACACATG
GTAGTACCGCAACCAGCAGCTCCTCCCGTAAGAGGCCCGAAACTTGACCG
TCCAAAGCTACAGCTCAACTGCACCAATGAAGACTGGAACGCTTTTCAAC
GTCGTTGGGAGACTTACCGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001693XLOC_001693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003062-exon-sc0000024-1491911889:901402..901725TCONS_00003062-exon-sc0000024-1491911889:901402..901725Clytia hemisphaericaexon
TCONS_00003062-exon-sc0000024-1510915933:901402..901725TCONS_00003062-exon-sc0000024-1510915933:901402..901725Clytia hemisphaericaexon
TCONS_00003062-exon-sc0000024-1575043694:901402..901725TCONS_00003062-exon-sc0000024-1575043694:901402..901725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:901402..901725 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.846771	0.487433	0.826505	0.976319	0	2.24802	1.13314	0.106051	1.0398	2.14235	1.25013	0	0.536338	1.01562	0.625586	1.21725	1.31615	0.740632	1.16554	0.343146	0	0.436437	0.101025	0.942692	0.662403	0.581861	0.845975	0.902847	0.342389	0.34884
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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