TCONS_00003058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003058
Unique NameTCONS_00003058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003058 ID=TCONS_00003058|Name=TCONS_00003058|organism=Clytia hemisphaerica|type=transcript|length=528bp
TCGAAAGGTCATCTTTAACATTTTCATTGACAAAATCTACTACATACAGT
ACATTATATCTTTATTGTAACATCTTTcatttcaaagataaaaaagcAAA
TATGTTCTAAAAAATCTGCCGAATCTCTCATCTCAATATCCATCCCATTC
TTGCCGAGTCTGTATTAGAGCCTCACATACGAAATAAGCAGTCGAGCTCA
AGTTTCTGGACTACATTGTACAcgtttgtttttattacatttcCGAGTTT
AAATTTTGTATATGTTTGAAGCGAAGGAGATATGAGTTTTGAGTTTTCAA
GCCACCGATAAAGTCTGTCATTCTGAAGCGTAATGTATCGATATACTTTA
CATTGGAAATCCAAATGAATTTACTTCACCGACTGCAACAAGACTTATAT
TCGAGCAAAGGCTTCagttaaaagtttttctacAATAACAACATAACGAT
GATAACAGTTTTGGCGGTAGAATGATTCCATGGTTGCGTCTATGCTGaat
ttgtttccatttcaaatatttttTTTCT
Run BLAST on NCBI

transcript from alignment at sc0000024:804548..805075

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003058 ID=TCONS_00003058|Name=TCONS_00003058|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at sc0000024:804548..805075 (Clytia hemisphaerica)
AGAAAaaaaatatttgaaatggaaacaaattCAGCATAGACGCAACCATG
GAATCATTCTACCGCCAAAACTGTTATCATCGTTATGTTGTTATTgtaga
aaaacttttaactGAAGCCTTTGCTCGAATATAAGTCTTGTTGCAGTCGG
TGAAGTAAATTCATTTGGATTTCCAATGTAAAGTATATCGATACATTACG
CTTCAGAATGACAGACTTTATCGGTGGCTTGAAAACTCAAAACTCATATC
TCCTTCGCTTCAAACATATACAAAATTTAAACTCGgaaatgtaataaaaa
caaacgTGTACAATGTAGTCCAGAAACTTGAGCTCGACTGCTTATTTCGT
ATGTGAGGCTCTAATACAGACTCGGCAAGAATGGGATGGATATTGAGATG
AGAGATTCGGCAGATTTTTTAGAACATATTTgcttttttatctttgaaat
gAAAGATGTTACAATAAAGATATAATGTACTGTATGTAGTAGATTTTGTC
AATGAAAATGTTAAAGATGACCTTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001689XLOC_001689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003058-exon-sc0000024-1491911889:804548..805075TCONS_00003058-exon-sc0000024-1491911889:804548..805075Clytia hemisphaericaexon
TCONS_00003058-exon-sc0000024-1510915933:804548..805075TCONS_00003058-exon-sc0000024-1510915933:804548..805075Clytia hemisphaericaexon
TCONS_00003058-exon-sc0000024-1575043694:804548..805075TCONS_00003058-exon-sc0000024-1575043694:804548..805075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:804548..805075 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.37662	3.26944	5.68753	5.59284	0.466776	0.750066	0.676057	0.261274	2.62249	2.62502	0.252607	0.873254	0.952145	0.930314	5.9749	6.0397	1.99029	2.93968	0.896907	0.577882	0.477629	0.639408	1.04163	0	0.370322	0.377299
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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