TCONS_00003055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003055
Unique NameTCONS_00003055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003055 ID=TCONS_00003055|Name=TCONS_00003055|organism=Clytia hemisphaerica|type=transcript|length=302bp
cttgaaaaaaggtacccttatggttcgcatccattttgcctaagtaaacC
CCCCGGGAAATTTCAGCTAAATCTGTTCGTTAGAATGTCTTAAACCTGTT
CGTTATTCTCTGAGAAATTATATCCGAGGCGGTCGCTTTAGATGTTCACT
GTTCACTGCAGCTTTCGTCACATTTGTCAGATTGATTTAAATGACGTGTT
GAAATAAGTAGGCCCCTAGTATAATGTGAATGAGTGCATTTTATATTGAG
GAAGCTGCGTCGAaaattccgtccagtttcgataactcaatcaaaagtta
tg
Run BLAST on NCBI

transcript from alignment at sc0000024:751291..751592

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003055 ID=TCONS_00003055|Name=TCONS_00003055|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at sc0000024:751291..751592 (Clytia hemisphaerica)
cataacttttgattgagttatcgaaactggacggaatttTCGACGCAGCT
TCCTCAATATAAAATGCACTCATTCACATTATACTAGGGGCCTACTTATT
TCAACACGTCATTTAAATCAATCTGACAAATGTGACGAAAGCTGCAGTGA
ACAGTGAACATCTAAAGCGACCGCCTCGGATATAATTTCTCAGAGAATAA
CGAACAGGTTTAAGACATTCTAACGAACAGATTTAGCTGAAATTTCCCGG
GGGgtttacttaggcaaaatggatgcgaaccataagggtaccttttttca
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001686XLOC_001686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003055-exon-sc0000024-1491911889:751291..751592TCONS_00003055-exon-sc0000024-1491911889:751291..751592Clytia hemisphaericaexon
TCONS_00003055-exon-sc0000024-1510915933:751291..751592TCONS_00003055-exon-sc0000024-1510915933:751291..751592Clytia hemisphaericaexon
TCONS_00003055-exon-sc0000024-1575043694:751291..751592TCONS_00003055-exon-sc0000024-1575043694:751291..751592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:751291..751592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.33481	4.08751	9.49198	11.8191	6.16654	4.87288	3.91928	5.04513	3.85332	5.56846	6.94913	4.06052	17.2332	14.4754	14.93	12.0747	8.86782	9.08923	14.5826	22.4656	7.36857	4.85208	3.93222	5.95827	13.9103	17.5265	25.0803	28.4393	3.38356	9.04919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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