TCONS_00003053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003053
Unique NameTCONS_00003053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003053 ID=TCONS_00003053|Name=TCONS_00003053|organism=Clytia hemisphaerica|type=transcript|length=276bp
cccATTTCGATTTAATgcaattaaaaatgaaacttttcacttttttgcac
cgattcttcaaaataaaaatatttaacctTTTGACCCAGAATGCTGTACA
TATATGCAATTTGATAGACACGTCCTTCTCGCGCCATATCTTTTATTGGC
TTGCTTAGTAAtcgttcaaaaaagaagaaaaagaaagtctaAGCATTCGG
TTGATATATATaatgatgttatgttatgttatgATCACGTGGTGAGTCAG
CACTTTTCGAAGAAAAACActgattc
Run BLAST on NCBI

transcript from alignment at sc0000024:735639..735914

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003053 ID=TCONS_00003053|Name=TCONS_00003053|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0000024:735639..735914 (Clytia hemisphaerica)
gaatcagTGTTTTTCTTCGAAAAGTGCTGACTCACCACGTGATcataaca
taacataacatcattATATATATCAACCGAATGCTtagactttctttttc
ttcttttttgaacgaTTACTAAGCAAGCCAATAAAAGATATGGCGCGAGA
AGGACGTGTCTATCAAATTGCATATATGTACAGCATTCTGGGTCAAAagg
ttaaatatttttattttgaagaatcggtgcaaaaaagtgaaaagtttcat
ttttaattgcATTAAATCGAAATggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001684XLOC_001684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003053-exon-sc0000024-1491911889:735639..735914TCONS_00003053-exon-sc0000024-1491911889:735639..735914Clytia hemisphaericaexon
TCONS_00003053-exon-sc0000024-1510915933:735639..735914TCONS_00003053-exon-sc0000024-1510915933:735639..735914Clytia hemisphaericaexon
TCONS_00003053-exon-sc0000024-1575043694:735639..735914TCONS_00003053-exon-sc0000024-1575043694:735639..735914Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:735639..735914 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08572	1.01695	0.590389	0.577603	0	0	0.670379	1.2552	0	0	0	0	0	0.720282	2.07259	0	1.1743	0	1.10858	1.74008	0	1.47543	0	1.08708	0.559835	0.49964	0.714983	0	0.578746	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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