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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003052 ID=TCONS_00003052|Name=TCONS_00003052|organism=Clytia hemisphaerica|type=transcript|length=2747bp
AAACAATAGATCAAATAGAAAGAATAGAGAGGGAATACTACTAGATTGAG
ATATTTTAAATGTGATGTCAAGCCAATTTGAAGGTTCCGTTACGTTGATT
TGACGTGCTTGTCGAAGAGCGCGTGCCAAGAATAATTTTGTTGAAGTATC
GAAAAAAGCTTGGTGTTTTTAAGAAAACacacttttttaataagagaCAT
TCTATAAACAACCGCAACAAGTTCAATCATAGTGCATTATGGGTTATATg
taaaaaggtgatttttttgtttcgataacAATCATAAGGGTATCATATTC
ACTGAGGATAGTTGTGGTTGCATCCAAATAATCGAATCTTGAGAAAAACA
AAAGGAAGGATTTAGGATATAAATGTAGTGTAAGATATGATACGGAGGAT
CAAATCACAGAAGATGACCGTTTCGAGAGGAGCAGGTGAGAGGAGTAGTA
TTTCTACTACTCAGTTCAAAAGTAAACTAGCCTTGGCTCTATCGAACAGT
GTCAATGGCGAGGGTAAAGAGGCTGTGCCGAGGCGAGGTGACTATGTTTT
GATGGAACATTTACTGGATAAACATGAGCTTCCATTGACAGTTAATATCA
AGAATTTCGGTAAAAGGAACAACAATAATACTGAAACGCAACAAAGATAT
AACGGGATTTCTACTATACAGACATGCCGGTATTCAACTACTTTACAATG
TGTGACGGCTACTAGTGGTAGAGAACTTAACATCCCAATCAGTAGAGAAA
GCCAATCAGTTGTGGTAAACTTTTTATCTATTGATAATACAGCTTTGTAT
CGAACATTAGGTGAGGTGCGCTGTAAAAAGCGTGATCAAAATATATTATG
GTTTACATCAACTAAGCCGTTCGTCAATGACAAAAGTACTTTTCATGCAG
GACAGATATTTTCGTTCGCGCCTGCAGGCTTGTTATCATCGTTTAAAAGA
GACCGTAACATACGTGGCGTCACAGTCTTCGCGTACCCTTCATTGAGAAA
GTATTACCTGTCACTAGAAGCTGAAGGAGATTTCCGTAAATGTGACGCGC
CTACAACGACACAAACGATCGAACTTTCAGAATTATTAAAGTCAGCTAAC
TTtccattttttataaatattccACACACAAATAGTGATTCAATGGGTGA
CTTGTCAAATTTCACAGGACGTTATTTCGTCAAGAGTAAAATGGAACACA
CTGTTTTATACATTTCGAAGAAATTTCGCGGCTCGTTACAAATTCATTCC
TTTCCTGTCAACAGAGACTTGTATGCCAAAGTTCTTACCGGGAGGAGACC
AATCGACCGCTTAGAAAAGGAAGAGATAGACCTTATGATCAGGTGTTTTG
AAGGAAACAGCAAAAGAGATGCAAATGgttattgttttaaaacttaTAAC
GAAGTCGGTATCATTCGATTACTTGAGGAAATATTTCTAGAGCTTGATCA
ATTTAAGGAGGAGGGAGTTTATACACGTTTGTTGACTAAGAAACCAATTA
ACAGAAAATCCATCCAAAAACGTGTCATCAAAACTTATCTTAGGAACAAT
CAGCAGAGAAAAAATGCTGACACTGCAAGTCGTTATTTGCAAAGCGTGGA
TGGGAAAAGTGATTCGATTTTTGACGATGAAACAAAACAGAATTACGTCA
ACGAGTCGTTATTTGATGGACAAATGACGGAAGATAACGTAAAGAAACGT
AAGACACGGGAGCTTGTTGTCGAATTTGATGACGGAGGTTACGTTATTAT
TCCGTTTGACGGTAACTCACCAAAAGTCTCCGTGGGCAATGACGCGCAAA
CATTACGACGTACTGATAATTTGGCGTATAATTATCATCAGAATAGTTGT
GACGATGATGAAGACGCTAGCGATGAGGATCTGGAATCGGAAGTTGTTTA
CGATAAAACTTGCGATGAAGACGATTACCATCAAATGTATGATTTGACTT
GCGATCAACATATTTACACTTATATCTCATGCGAAGAGTTAGATAAACTA
TCGTCCGGAAAACAAACCAATTCTGATAAAACATCACCTACCGGACAACC
TGATGAACGTTATAGTACGGTTTACGATTATTCATACGCAGAACATTTCA
CGAGAGCAACATCACCTATGGGCAGGTCAAATATAGCACAATTAAGCGTT
GAAGAGGTTGGGAACTTGCTCAAAGTCAACCTCATGAAACACCATGTGAG
CTTGTTCCAAGAACATCAGATTGATGGAGAAAAACTTCAAGCACTATCAG
AACGtgattttattgaaatgaaCTTAACTAAATTTGAAGCTCGCAAATTG
ACTTCTTATTTAGACGGCTGGCGAGGGAAGGAAGGTAGCGCGACCGATCA
TGCAACATGGCTTTCCAAATTAGCGAAAGATTGGACtgttaatgacgtca
tcaagtatCTCCAACATATCAACatgatatctttccaacgatttGTTCAA
AGACATTCGATTGATGGGTTTCTATTGAAACAGATTCTGAAAGATGACGT
CATGGAAAGTTTAAATGATGAACATAGCCTCGTTTTGAGAAAAACAGACA
TTTTGAGACTTAGAAATTATGTCATGGAAGATGAAAAGCCGAAATTTAGA
TTCTTTGATGTTTAGTTaatattttttgtattaaattttttCTACTCCAA
AtagtttttttgcaaaattagagtttatatatatttttcaggGAATTTTT
AATGACGAATGTAAATATGATAGCTTATAGTATATTTTAATAACCAG Run BLAST on NCBI protein sequence of WegIE1 putative cnidarian restricted protein >TCONS_00003052-protein ID=TCONS_00003052-protein|Name=WegIE1 putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=742bp
MIRRIKSQKMTVSRGAGERSSISTTQFKSKLALALSNSVNGEGKEAVPRR
GDYVLMEHLLDKHELPLTVNIKNFGKRNNNNTETQQRYNGISTIQTCRYS
TTLQCVTATSGRELNIPISRESQSVVVNFLSIDNTALYRTLGEVRCKKRD
QNILWFTSTKPFVNDKSTFHAGQIFSFAPAGLLSSFKRDRNIRGVTVFAY
PSLRKYYLSLEAEGDFRKCDAPTTTQTIELSELLKSANFPFFINIPHTNS
DSMGDLSNFTGRYFVKSKMEHTVLYISKKFRGSLQIHSFPVNRDLYAKVL
TGRRPIDRLEKEEIDLMIRCFEGNSKRDANGYCFKTYNEVGIIRLLEEIF
LELDQFKEEGVYTRLLTKKPINRKSIQKRVIKTYLRNNQQRKNADTASRY
LQSVDGKSDSIFDDETKQNYVNESLFDGQMTEDNVKKRKTRELVVEFDDG
GYVIIPFDGNSPKVSVGNDAQTLRRTDNLAYNYHQNSCDDDEDASDEDLE
SEVVYDKTCDEDDYHQMYDLTCDQHIYTYISCEELDKLSSGKQTNSDKTS
PTGQPDERYSTVYDYSYAEHFTRATSPMGRSNIAQLSVEEVGNLLKVNLM
KHHVSLFQEHQIDGEKLQALSERDFIEMNLTKFEARKLTSYLDGWRGKEG
SATDHATWLSKLAKDWTVNDVIKYLQHINMISFQRFVQRHSIDGFLLKQI
LKDDVMESLNDEHSLVLRKTDILRLRNYVMEDEKPKFRFFDV Run BLAST on NCBI transcript from alignment at sc0000024:708666..711412 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003052 ID=TCONS_00003052|Name=TCONS_00003052|organism=Clytia hemisphaerica|type=transcript|length=2747bp|location=Sequence derived from alignment at sc0000024:708666..711412 (Clytia hemisphaerica)
CTGGTTATTAAAATATACTATAAGCTATCATATTTACATTCGTCATTAAA
AATTCcctgaaaaatatatataaactctaattttgcaaaaaaactaTTTG
GAGTAGaaaaaatttaatacaaaaaatattAACTAAACATCAAAGAATCT
AAATTTCGGCTTTTCATCTTCCATGACATAATTTCTAAGTCTCAAAATGT
CTGTTTTTCTCAAAACGAGGCTATGTTCATCATTTAAACTTTCCATGACG
TCATCTTTCAGAATCTGTTTCAATAGAAACCCATCAATCGAATGTCTTTG
AACaaatcgttggaaagatatcatGTTGATATGTTGGAGatacttgatga
cgtcattaacaGTCCAATCTTTCGCTAATTTGGAAAGCCATGTTGCATGA
TCGGTCGCGCTACCTTCCTTCCCTCGCCAGCCGTCTAAATAAGAAGTCAA
TTTGCGAGCTTCAAATTTAGTTAAGttcatttcaataaaatcaCGTTCTG
ATAGTGCTTGAAGTTTTTCTCCATCAATCTGATGTTCTTGGAACAAGCTC
ACATGGTGTTTCATGAGGTTGACTTTGAGCAAGTTCCCAACCTCTTCAAC
GCTTAATTGTGCTATATTTGACCTGCCCATAGGTGATGTTGCTCTCGTGA
AATGTTCTGCGTATGAATAATCGTAAACCGTACTATAACGTTCATCAGGT
TGTCCGGTAGGTGATGTTTTATCAGAATTGGTTTGTTTTCCGGACGATAG
TTTATCTAACTCTTCGCATGAGATATAAGTGTAAATATGTTGATCGCAAG
TCAAATCATACATTTGATGGTAATCGTCTTCATCGCAAGTTTTATCGTAA
ACAACTTCCGATTCCAGATCCTCATCGCTAGCGTCTTCATCATCGTCACA
ACTATTCTGATGATAATTATACGCCAAATTATCAGTACGTCGTAATGTTT
GCGCGTCATTGCCCACGGAGACTTTTGGTGAGTTACCGTCAAACGGAATA
ATAACGTAACCTCCGTCATCAAATTCGACAACAAGCTCCCGTGTCTTACG
TTTCTTTACGTTATCTTCCGTCATTTGTCCATCAAATAACGACTCGTTGA
CGTAATTCTGTTTTGTTTCATCGTCAAAAATCGAATCACTTTTCCCATCC
ACGCTTTGCAAATAACGACTTGCAGTGTCAGCATTTTTTCTCTGCTGATT
GTTCCTAAGATAAGTTTTGATGACACGTTTTTGGATGGATTTTCTGTTAA
TTGGTTTCTTAGTCAACAAACGTGTATAAACTCCCTCCTCCTTAAATTGA
TCAAGCTCTAGAAATATTTCCTCAAGTAATCGAATGATACCGACTTCGTT
AtaagttttaaaacaataacCATTTGCATCTCTTTTGCTGTTTCCTTCAA
AACACCTGATCATAAGGTCTATCTCTTCCTTTTCTAAGCGGTCGATTGGT
CTCCTCCCGGTAAGAACTTTGGCATACAAGTCTCTGTTGACAGGAAAGGA
ATGAATTTGTAACGAGCCGCGAAATTTCTTCGAAATGTATAAAACAGTGT
GTTCCATTTTACTCTTGACGAAATAACGTCCTGTGAAATTTGACAAGTCA
CCCATTGAATCACTATTTGTGTGTggaatatttataaaaaatggaAAGTT
AGCTGACTTTAATAATTCTGAAAGTTCGATCGTTTGTGTCGTTGTAGGCG
CGTCACATTTACGGAAATCTCCTTCAGCTTCTAGTGACAGGTAATACTTT
CTCAATGAAGGGTACGCGAAGACTGTGACGCCACGTATGTTACGGTCTCT
TTTAAACGATGATAACAAGCCTGCAGGCGCGAACGAAAATATCTGTCCTG
CATGAAAAGTACTTTTGTCATTGACGAACGGCTTAGTTGATGTAAACCAT
AATATATTTTGATCACGCTTTTTACAGCGCACCTCACCTAATGTTCGATA
CAAAGCTGTATTATCAATAGATAAAAAGTTTACCACAACTGATTGGCTTT
CTCTACTGATTGGGATGTTAAGTTCTCTACCACTAGTAGCCGTCACACAT
TGTAAAGTAGTTGAATACCGGCATGTCTGTATAGTAGAAATCCCGTTATA
TCTTTGTTGCGTTTCAGTATTATTGTTGTTCCTTTTACCGAAATTCTTGA
TATTAACTGTCAATGGAAGCTCATGTTTATCCAGTAAATGTTCCATCAAA
ACATAGTCACCTCGCCTCGGCACAGCCTCTTTACCCTCGCCATTGACACT
GTTCGATAGAGCCAAGGCTAGTTTACTTTTGAACTGAGTAGTAGAAATAC
TACTCCTCTCACCTGCTCCTCTCGAAACGGTCATCTTCTGTGATTTGATC
CTCCGTATCATATCTTACACTACATTTATATCCTAAATCCTTCCTTTTGT
TTTTCTCAAGATTCGATTATTTGGATGCAACCACAACTATCCTCAGTGAA
TATGATACCCTTATGATTgttatcgaaacaaaaaaatcacctttttacAT
ATAACCCATAATGCACTATGATTGAACTTGTTGCGGTTGTTTATAGAATG
tctcttattaaaaaagtgtGTTTTCTTAAAAACACCAAGCTTTTTTCGAT
ACTTCAACAAAATTATTCTTGGCACGCGCTCTTCGACAAGCACGTCAAAT
CAACGTAACGGAACCTTCAAATTGGCTTGACATCACATTTAAAATATCTC
AATCTAGTAGTATTCCCTCTCTATTCTTTCTATTTGATCTATTGTTT Coding sequence (CDS) from alignment at sc0000024:708666..711412 >TCONS_00003052 ID=TCONS_00003052|Name=TCONS_00003052|organism=Clytia hemisphaerica|type=CDS|length=2229bp|location=Sequence derived from alignment at sc0000024:708666..711412 (Clytia hemisphaerica)
CTAAACATCAAAGAATCTAAATTTCGGCTTTTCATCTTCCATGACATAAT
TTCTAAGTCTCAAAATGTCTGTTTTTCTCAAAACGAGGCTATGTTCATCA
TTTAAACTTTCCATGACGTCATCTTTCAGAATCTGTTTCAATAGAAACCC
ATCAATCGAATGTCTTTGAACaaatcgttggaaagatatcatGTTGATAT
GTTGGAGatacttgatgacgtcattaacaGTCCAATCTTTCGCTAATTTG
GAAAGCCATGTTGCATGATCGGTCGCGCTACCTTCCTTCCCTCGCCAGCC
GTCTAAATAAGAAGTCAATTTGCGAGCTTCAAATTTAGTTAAGttcattt
caataaaatcaCGTTCTGATAGTGCTTGAAGTTTTTCTCCATCAATCTGA
TGTTCTTGGAACAAGCTCACATGGTGTTTCATGAGGTTGACTTTGAGCAA
GTTCCCAACCTCTTCAACGCTTAATTGTGCTATATTTGACCTGCCCATAG
GTGATGTTGCTCTCGTGAAATGTTCTGCGTATGAATAATCGTAAACCGTA
CTATAACGTTCATCAGGTTGTCCGGTAGGTGATGTTTTATCAGAATTGGT
TTGTTTTCCGGACGATAGTTTATCTAACTCTTCGCATGAGATATAAGTGT
AAATATGTTGATCGCAAGTCAAATCATACATTTGATGGTAATCGTCTTCA
TCGCAAGTTTTATCGTAAACAACTTCCGATTCCAGATCCTCATCGCTAGC
GTCTTCATCATCGTCACAACTATTCTGATGATAATTATACGCCAAATTAT
CAGTACGTCGTAATGTTTGCGCGTCATTGCCCACGGAGACTTTTGGTGAG
TTACCGTCAAACGGAATAATAACGTAACCTCCGTCATCAAATTCGACAAC
AAGCTCCCGTGTCTTACGTTTCTTTACGTTATCTTCCGTCATTTGTCCAT
CAAATAACGACTCGTTGACGTAATTCTGTTTTGTTTCATCGTCAAAAATC
GAATCACTTTTCCCATCCACGCTTTGCAAATAACGACTTGCAGTGTCAGC
ATTTTTTCTCTGCTGATTGTTCCTAAGATAAGTTTTGATGACACGTTTTT
GGATGGATTTTCTGTTAATTGGTTTCTTAGTCAACAAACGTGTATAAACT
CCCTCCTCCTTAAATTGATCAAGCTCTAGAAATATTTCCTCAAGTAATCG
AATGATACCGACTTCGTTAtaagttttaaaacaataacCATTTGCATCTC
TTTTGCTGTTTCCTTCAAAACACCTGATCATAAGGTCTATCTCTTCCTTT
TCTAAGCGGTCGATTGGTCTCCTCCCGGTAAGAACTTTGGCATACAAGTC
TCTGTTGACAGGAAAGGAATGAATTTGTAACGAGCCGCGAAATTTCTTCG
AAATGTATAAAACAGTGTGTTCCATTTTACTCTTGACGAAATAACGTCCT
GTGAAATTTGACAAGTCACCCATTGAATCACTATTTGTGTGTggaatatt
tataaaaaatggaAAGTTAGCTGACTTTAATAATTCTGAAAGTTCGATCG
TTTGTGTCGTTGTAGGCGCGTCACATTTACGGAAATCTCCTTCAGCTTCT
AGTGACAGGTAATACTTTCTCAATGAAGGGTACGCGAAGACTGTGACGCC
ACGTATGTTACGGTCTCTTTTAAACGATGATAACAAGCCTGCAGGCGCGA
ACGAAAATATCTGTCCTGCATGAAAAGTACTTTTGTCATTGACGAACGGC
TTAGTTGATGTAAACCATAATATATTTTGATCACGCTTTTTACAGCGCAC
CTCACCTAATGTTCGATACAAAGCTGTATTATCAATAGATAAAAAGTTTA
CCACAACTGATTGGCTTTCTCTACTGATTGGGATGTTAAGTTCTCTACCA
CTAGTAGCCGTCACACATTGTAAAGTAGTTGAATACCGGCATGTCTGTAT
AGTAGAAATCCCGTTATATCTTTGTTGCGTTTCAGTATTATTGTTGTTCC
TTTTACCGAAATTCTTGATATTAACTGTCAATGGAAGCTCATGTTTATCC
AGTAAATGTTCCATCAAAACATAGTCACCTCGCCTCGGCACAGCCTCTTT
ACCCTCGCCATTGACACTGTTCGATAGAGCCAAGGCTAGTTTACTTTTGA
ACTGAGTAGTAGAAATACTACTCCTCTCACCTGCTCCTCTCGAAACGGTC
ATCTTCTGTGATTTGATCCTCCGTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003052-exon-sc0000024-1491911889:708666..711412 | TCONS_00003052-exon-sc0000024-1491911889:708666..711412 | Clytia hemisphaerica | exon |
| TCONS_00003052-exon-sc0000024-1510915933:708666..711412 | TCONS_00003052-exon-sc0000024-1510915933:708666..711412 | Clytia hemisphaerica | exon |
| TCONS_00003052-exon-sc0000024-1575043694:708666..711412 | TCONS_00003052-exon-sc0000024-1575043694:708666..711412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:708666..711412 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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