TCONS_00003046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003046
Unique NameTCONS_00003046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003046 ID=TCONS_00003046|Name=TCONS_00003046|organism=Clytia hemisphaerica|type=transcript|length=471bp
CTGCCCAATATACCCGGAATACCGGAAGAAAAGAGGCCCAATACCGGAAT
ACCGATAAATACCGGATTCTCGGAAGCCCCTCCCTTATGGGGGATTGGGA
GGAAGGCCTGGGGGGAAACAAATTCTGAGGAGGCATTCAAGGATGTAGGA
AGGGTGTCTGAGGACAATATAAACCCTGATTAAAATTATTTCAAGTCATC
TCATGTCCTTTCCCTGAAACAGTGTGTTTGAAGCTTTTACAAAGCTCTTT
CAACAATTACAACATATctcaaatatgaagcataagtGTGAGAGTGTAAA
ATAAGTTCATAAATTCATAACTCTTCGAATTGAAACCTTTGGACTTACAT
TTGTAATAAAGCTCTTACAACGCaagaataagaaaataagaGAATGGCAA
TAATTTTATATCGTTTTGGCAGGATATTTGAGAAATCTTCGATTTCAATT
CTATGGACTTGCATGTTCAAG
Run BLAST on NCBI

transcript from alignment at sc0000024:482163..482633

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003046 ID=TCONS_00003046|Name=TCONS_00003046|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000024:482163..482633 (Clytia hemisphaerica)
CTTGAACATGCAAGTCCATAGAATTGAAATCGAAGATTTCTCAAATATCC
TGCCAAAACGATATAAAATTATTGCCATTCtcttattttcttattcttGC
GTTGTAAGAGCTTTATTACAAATGTAAGTCCAAAGGTTTCAATTCGAAGA
GTTATGAATTTATGAACTTATTTTACACTCTCACacttatgcttcatatt
tgagATATGTTGTAATTGTTGAAAGAGCTTTGTAAAAGCTTCAAACACAC
TGTTTCAGGGAAAGGACATGAGATGACTTGAAATAATTTTAATCAGGGTT
TATATTGTCCTCAGACACCCTTCCTACATCCTTGAATGCCTCCTCAGAAT
TTGTTTCCCCCCAGGCCTTCCTCCCAATCCCCCATAAGGGAGGGGCTTCC
GAGAATCCGGTATTTATCGGTATTCCGGTATTGGGCCTCTTTTCTTCCGG
TATTCCGGGTATATTGGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001677XLOC_001677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003046-exon-sc0000024-1491911889:482163..482633TCONS_00003046-exon-sc0000024-1491911889:482163..482633Clytia hemisphaericaexon
TCONS_00003046-exon-sc0000024-1510915933:482163..482633TCONS_00003046-exon-sc0000024-1510915933:482163..482633Clytia hemisphaericaexon
TCONS_00003046-exon-sc0000024-1575043694:482163..482633TCONS_00003046-exon-sc0000024-1575043694:482163..482633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:482163..482633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.613278	0.449998	0	0	0.870463	0.162983	0.114108	0.282683	0	0.450916	0	0	0.384455	0.412579	0.101653	0.833526	0.143945	0	0.261847	0.383159	0.31052	0.141154	0	0.648763	0.185676	0	0.450888	0.306255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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