TCONS_00003041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003041
Unique NameTCONS_00003041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003041 ID=TCONS_00003041|Name=TCONS_00003041|organism=Clytia hemisphaerica|type=transcript|length=692bp
TCAAAAGAACTTCTTCAAAAATCGTTCAAAGCTGCTGTAAAAATTGGTAA
AGCCGGGGGTCCTGATAACATCACCGCTAAGGACCTATCTTTGAACCCGA
AAGCCTCAGTTGAGGGTTTACAGTACGTTGTCAAATGTAGTCTATCGTCT
GGTACTTTTCCAACTCAATGAAAAACTTCTAAAGTATCTGCAGTCTTCAA
GAAAGGCTCTAAATCGGATTGTTCAAATTACAGGCCGATATCATTACTCT
CAATCCCAAGTAAAATTGTTGAACATCTTGTCTGCTCACAATTAACTGAC
CATCTCAGAGAGCATTGTCTCGAATCCGAACACCAGTGGGGCTTTAGACC
GAATCGATCGACCGATGACAACCTACTCTATATGACCGAGAAGTGGAGAA
AAGCCATCGACTCCCGCCAATCAGTAGGTACCCTGTtcatagattttcga
aaagcATTTGATAGCGTATCCCACCCAATTCTACTAAAAAAACTAAGTGC
TTCAGGGGTATCAGGTGACTTTTTAACCTATCTTGAGAGTTATTTGTCGA
ATCGTAAGCAATTCACTGTTATCAATGGAGTCAACTCAGATTGAACTGAT
GTGGAATTCGGAGTACCGCAAGGGTCACTTATCGGCCCACCGTGCTTTTC
AGTTAATGTTAACGACATGAGTGAAAGCATTGATTGTGATCT
Run BLAST on NCBI

transcript from alignment at sc0000024:352544..353235

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003041 ID=TCONS_00003041|Name=TCONS_00003041|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0000024:352544..353235 (Clytia hemisphaerica)
AGATCACAATCAATGCTTTCACTCATGTCGTTAACATTAACTGAAAAGCA
CGGTGGGCCGATAAGTGACCCTTGCGGTACTCCGAATTCCACATCAGTTC
AATCTGAGTTGACTCCATTGATAACAGTGAATTGCTTACGATTCGACAAA
TAACTCTCAAGATAGGTTAAAAAGTCACCTGATACCCCTGAAGCACTTAG
TTTTTTTAGTAGAATTGGGTGGGATACGCTATCAAATgcttttcgaaaat
ctatgaACAGGGTACCTACTGATTGGCGGGAGTCGATGGCTTTTCTCCAC
TTCTCGGTCATATAGAGTAGGTTGTCATCGGTCGATCGATTCGGTCTAAA
GCCCCACTGGTGTTCGGATTCGAGACAATGCTCTCTGAGATGGTCAGTTA
ATTGTGAGCAGACAAGATGTTCAACAATTTTACTTGGGATTGAGAGTAAT
GATATCGGCCTGTAATTTGAACAATCCGATTTAGAGCCTTTCTTGAAGAC
TGCAGATACTTTAGAAGTTTTTCATTGAGTTGGAAAAGTACCAGACGATA
GACTACATTTGACAACGTACTGTAAACCCTCAACTGAGGCTTTCGGGTTC
AAAGATAGGTCCTTAGCGGTGATGTTATCAGGACCCCCGGCTTTACCAAT
TTTTACAGCAGCTTTGAACGATTTTTGAAGAAGTTCTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001672XLOC_001672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003041-exon-sc0000024-1491911889:352544..353235TCONS_00003041-exon-sc0000024-1491911889:352544..353235Clytia hemisphaericaexon
TCONS_00003041-exon-sc0000024-1510915933:352544..353235TCONS_00003041-exon-sc0000024-1510915933:352544..353235Clytia hemisphaericaexon
TCONS_00003041-exon-sc0000024-1575043694:352544..353235TCONS_00003041-exon-sc0000024-1575043694:352544..353235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:352544..353235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.875269	1.36487	1.27706	1.23138	1.94393	2.24792	0.267892	0.901898	1.2575	1.26578	2.293	1.4024	1.54028	1.13267	0.493368	0.359954	0.370894	0.3656	0.540684	0.126037	0.31926	0.400465	0	0.222227	2.09713	2.75753	0.597117	0.329681	0.148308	0.497416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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