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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003037 ID=TCONS_00003037|Name=TCONS_00003037|organism=Clytia hemisphaerica|type=transcript|length=2358bp
NNaaccccctggaattccaggcaatttcaggtttaaacccctctggaatt
ctgaattttagtaggatttaaaaagctacccccatggaattccagttatt
tttggtttttgtatctccctatggaattccgccacatatcaaaccttacc
tccttggaacggaaatggacatcctcaacagggggtatacggtttttttc
tggaaaagcccattgtttACATCcagcttttgattttttaatatgTAATT
TTCTTGAATATAGATTTCTCACTAAGAGATGGATCTAGGATGTTGCCTCA
GCACATTTTGTATCTGTTTGTTAGATAGGGTTGCCTTCTGCAAGAAGtct
gtttgaaaaattaatgtttcATTCAGCTTGTAGGCTGCGCGCATCCTCAG
AATTGATACACGGGATGCTTATCGTGTATAAAGTTTCCGTCCAAAAGTTA
CCCCAttatcaattttcataaaatgcTTCAGAAATCTATTGATTGTATTA
ACCTCTAGCCATTCaaacttttaattcaaatttgatgaaatttaaagatc
tctcatataaaacttaccaatcaagctaatcaagtttctgaaactCAAAA
gcacaaagacgggggtaactctcggacgagaattttatacacgaacacat
cccctatatcaaaacatcaaAGGGGATGCGTGCAGGCTGTCCAGCTTGCA
GAATCCAAAAGGTACACCGTTTCTTAGCAGATACAAAAACAATATTCTAG
ATCCTTCAGTTCCCAAAAATCcgattacatgtttttttataagcaagtgt
ctgtccctttatcaggctcgcattatgcttagcattttATTGTTCTCAag
caatagagccattgtttaggtacccaaaactgagcctgtatatgcttata
aaagataaAACATGTAACTCACGATGAAGTTGTTTCTGTGTGATCTCGAC
TTTTTTTCGTATGTTAGTATTTTTCttatgttttcttattttttaatgaT
GATTATTTTAGTAGTATATTTATACGATAATGATACCTAATTTTTTTGGT
CTCTCCCATTTTATTATACATATGAAATaccttttttgttattttttttg
tttttgtttttcttaattttcctaTTGTTATTTATAGTTGtacatttctt
ttgttttgctttagaatAATTATTGACACTCTCTTATTCGGTTTTTCAGG
GGGTAAGAATTTTGTTGATACCTAAACAATAAGATTAAAGTTTTCTATCG
AATTTTGAGGGTGTCTGCaatcttttttttgacaaaaatgtaaATGTAtc
ctttttttgctttttgttctATTCAATATCCATTTAGAAAGGAAAGGGTA
CAAACCTTTTCgagaaaaatcatgaaaatgaaGTCAGTAAATAAACTAAA
ATTattcttttaccccctggaataatggaaaaaaagtttcattAGACTCA
GCTTTCTTggtatggatataaaatttaattcatttttgataGCTTATCGC
GTTTTCTCTGATAAAACAAAAACCAGGATTTTACGGAGttgataatttta
atttttatcatcagaaaatttttgatatcAGATAGTGATTCCTTACTAAG
ATTTTAATGACTTTCCTTGAATTATAGTAGTTAAGATTTTGGTcctaatt
aataaaaacattcaaatagaatatatattttttgtgctCACGACTCGAAT
TATTGTTATTAAAAGTGTGTGTCATTTTTTTTAGTGTATAGAAAAATTGT
TCTAATTTTTGTGGAATGTATAtcagaaatttttattaaagccttttttt
tcaaacctctCAAATATTTAAGATCCTCGATATTATGAAGACTATTGGGT
AACACttgattctctctaattcgaaactcTATTACTTGAATCTTTCTGTG
AATCGAACGAAAAATTCATCCCTCAGTTTGTAAGTAGTCACCTAAAATGC
TCTAACTTATTCTAAGAAGATTTTTAGTCTTTTGGAAATCGGACTAGGGA
GAATCAAATGTCAAGTCTAACTGGGTAGCAAACTAGAGAGATACTAACTG
TAATATAAATAATTCAAACTCGACTCGACTCTACTTCAAAATTTTCCATA
CTGACCTACTTGGTCAAAATGTCTGAAGCATTATGGATCTTcctttcata
tttttcatttcggaCAGGTTTTGATATATAGGCTTTAGAATTTCTCATCT
AATATGTTTTTTTAATACCACTTATTATTATCATTTCTgcatcttttaaa
attttatttaagagATGTtgtataagaaaaacaaatcaaccataaaatat
ctaaaaaaatgtaaatagagctttttcaaaatgattaggaaaaaatcatc
ttttgtca Run BLAST on NCBI transcript from alignment at sc0000024:174378..176735 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003037 ID=TCONS_00003037|Name=TCONS_00003037|organism=Clytia hemisphaerica|type=transcript|length=2358bp|location=Sequence derived from alignment at sc0000024:174378..176735 (Clytia hemisphaerica)
tgacaaaagatgattttttcctaatcattttgaaaaagctctatttacat
ttttttagatattttatggttgatttgtttttcttatacaACATctctta
aataaaattttaaaagatgcAGAAATGATAATAATAAGTGGTATTAAAAA
AACATATTAGATGAGAAATTCTAAAGCCTATATATCAAAACCTGtccgaa
atgaaaaatatgaaaggAAGATCCATAATGCTTCAGACATTTTGACCAAG
TAGGTCAGTATGGAAAATTTTGAAGTAGAGTCGAGTCGAGTTTGAATTAT
TTATATTACAGTTAGTATCTCTCTAGTTTGCTACCCAGTTAGACTTGACA
TTTGATTCTCCCTAGTCCGATTTCCAAAAGACTAAAAATCTTCTTAGAAT
AAGTTAGAGCATTTTAGGTGACTACTTACAAACTGAGGGATGAATTTTTC
GTTCGATTCACAGAAAGATTCAAGTAATAgagtttcgaattagagagaat
caaGTGTTACCCAATAGTCTTCATAATATCGAGGATCTTAAATATTTGag
aggtttgaaaaaaaaggctttaataaaaatttctgaTATACATTCCACAA
AAATTAGAACAATTTTTCTATACACTAAAAAAAATGACACACACTTTTAA
TAACAATAATTCGAGTCGTGagcacaaaaaatatatattctatttgaatg
tttttattaattaggACCAAAATCTTAACTACTATAATTCAAGGAAAGTC
ATTAAAATCTTAGTAAGGAATCACTATCTgatatcaaaaattttctgatg
ataaaaattaaaattatcaaCTCCGTAAAATCCTGGTTTTTGTTTTATCA
GAGAAAACGCGATAAGCtatcaaaaatgaattaaattttatatccatacc
AAGAAAGCTGAGTCTaatgaaactttttttccattattccagggggtaaa
agaatAATTTTAGTTTATTTACTGACttcattttcatgatttttctcGAA
AAGGTTTGTACCCTTTCCTTTCTAAATGGATATTGAATagaacaaaaagc
aaaaaaaggaTACATttacatttttgtcaaaaaaaagattGCAGACACCC
TCAAAATTCGATAGAAAACTTTAATCTTATTGTTTAGGTATCAACAAAAT
TCTTACCCCCTGAAAAACCGAATAAGAGAGTGTCAATAATTattctaaag
caaaacaaaagaaatgtaCAACTATAAATAACAAtaggaaaattaagaaa
aacaaaaacaaaaaaaataacaaaaaaggtATTTCATATGTATAATAAAA
TGGGAGAGACCAAAAAAATTAGGTATCATTATCGTATAAATATACTACTA
AAATAATCAtcattaaaaaataagaaaacataaGAAAAATACTAACATAC
GAAAAAAAGTCGAGATCACACAGAAACAACTTCATCGTGAGTTACATGTT
ttatcttttataagcatatacaggctcagttttgggtacctaaacaatgg
ctctattgctTGAGAACAATaaaatgctaagcataatgcgagcctgataa
agggacagacacttgcttataaaaaaacatgtaatcgGATTTTTGGGAAC
TGAAGGATCTAGAATATTGTTTTTGTATCTGCTAAGAAACGGTGTACCTT
TTGGATTCTGCAAGCTGGACAGCCTGCACGCATCCCCTttgatgttttga
tataggggatgtgttcgtgtataaaattctcgtccgagagttacccccgt
ctttgtgcTTTTGagtttcagaaacttgattagcttgattggtaagtttt
atatgagagatctttaaatttcatcaaatttgaattaaaagtttGAATGG
CTAGAGGTTAATACAATCAATAGATTTCTGAAgcattttatgaaaattga
taaTGGGGTAACTTTTGGACGGAAACTTTATACACGATAAGCATCCCGTG
TATCAATTCTGAGGATGCGCGCAGCCTACAAGCTGAATgaaacattaatt
tttcaaacagaCTTCTTGCAGAAGGCAACCCTATCTAACAAACAGATACA
AAATGTGCTGAGGCAACATCCTAGATCCATCTCTTAGTGAGAAATCTATA
TTCAAGAAAATTAcatattaaaaaatcaaaagctgGATGTaaacaatggg
cttttccagaaaaaaaccgtataccccctgttgaggatgtccatttccgt
tccaaggaggtaaggtttgatatgtggcggaattccatagggagatacaa
aaaccaaaaataactggaattccatgggggtagctttttaaatcctacta
aaattcagaattccagaggggtttaaacctgaaattgcctggaattccag
ggggttNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003037-exon-sc0000024-1491911889:174378..176735 | TCONS_00003037-exon-sc0000024-1491911889:174378..176735 | Clytia hemisphaerica | exon |
| TCONS_00003037-exon-sc0000024-1510915933:174378..176735 | TCONS_00003037-exon-sc0000024-1510915933:174378..176735 | Clytia hemisphaerica | exon |
| TCONS_00003037-exon-sc0000024-1575043694:174378..176735 | TCONS_00003037-exon-sc0000024-1575043694:174378..176735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:174378..176735 . |
Blast
The following BLAST results are available for this feature:
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