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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003036 ID=TCONS_00003036|Name=TCONS_00003036|organism=Clytia hemisphaerica|type=transcript|length=1310bp
TGACATACGAAAGGGTTATGGAGTTACAAACAGTGATgaaaacttttttg
gaaaagttttaCGAGTGTGATGAAAAAGTGAGAAGAGAATGGATTGGAGG
CTTATTTGATGATGATGATCCAATGAGGAACCAATTAATCATCAGTGGCA
GTTTACAAGATGGGGCATTTCTTGTCCCTTTCATGATTCCCACCGTTAAC
ACAAACTATGACATTGATGTTATGCTAATCatagagaaattttcaaaaga
acagGCTAGTTCTTTCTTGATCGAAACAGAATATCCAGGCTATTATCTGA
TCGATACTGATGATGACGTAATTAAAAAAGGAGTTGACGATTTGCCAAAT
ATTTATCGACTGTTAAAGGGTGAAGAAACCTTTGAAACATTTGAGGAAGG
TTATGCCTCTTGTTGTACATCCAAAATAGGATGTCCTGCGATAACTATGT
CACTTTATGACGTCCTTAAAACAGGGAATAtctctttttggcaaaaaatt
gaaaattttcctttgacGGAAAAGGAAATGATTTGGAGAATGAAGTTTGA
CTATACTGTCagttttcaaattgatttttggCCCGATATAACTGAAGGAT
GGTTTGAACGCGAACGTTATTGGCCTGAGCCAGATATTGTACGTGAAATT
CGTGAGGCCGGGTGTGGTTTCGTTCGAAAGGCGATCAGAGACCAAGAAGA
TACATGGCGATTATCTTTCTCTCAAGCTGAAGGAATCTTAGCTAGAAAAC
AgaatcattttcaaaagaaaagctATTTATTGGCTAAACTAATTTACACT
TTAGAAACGCATGATCTAGTGGACGTCAAAACTGAACGAAAATTACCTTC
ATACCATCTTAAGACTGTTCATCTTTTCACTTTGGAGAACACGCCACAAG
AAGAGTTTGGAAGCCTTGAACAATCCGACGATTATTTAAAGCTCGCTTTA
ATGATTCTTGGGAAATTATCTGATGCCTTGAAAGTCGGATACCTTGCTTG
TTTCTTCGCACCGAAAATGAATTTATTGCAAGGATTTGATCAAGAGTTTT
TGGATACTGCAGCGTTTCGTTCATGCCTGACAGAGTGGCCAACGGCAGTA
ATAGTAAAACACTTGGAACATTCGTTGCACTAAATTGGACAGCTGTTTGC
AAGTTCGTTGGATCAACAGAGGAGCCATCGTTCTTTAAATCCGTTGGGAT
TAATTATATTTGGATGGTTTTATTCACAAAAGAGAGTGAACTTGAAACCC
AATTTGTTGTACGTATGAGGTTTGTGGTCAACAAATGAAGTGTGCCATGT
CAAGCCTGCG Run BLAST on NCBI protein sequence of TCONS_00003036-protein >TCONS_00003036-protein ID=TCONS_00003036-protein|Name=TCONS_00003036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
TYERVMELQTVMKTFLEKFYECDEKVRREWIGGLFDDDDPMRNQLIISGS
LQDGAFLVPFMIPTVNTNYDIDVMLIIEKFSKEQASSFLIETEYPGYYLI
DTDDDVIKKGVDDLPNIYRLLKGEETFETFEEGYASCCTSKIGCPAITMS
LYDVLKTGNISFWQKIENFPLTEKEMIWRMKFDYTVSFQIDFWPDITEGW
FERERYWPEPDIVREIREAGCGFVRKAIRDQEDTWRLSFSQAEGILARKQ
NHFQKKSYLLAKLIYTLETHDLVDVKTERKLPSYHLKTVHLFTLENTPQE
EFGSLEQSDDYLKLALMILGKLSDALKVGYLACFFAPKMNLLQGFDQEFL
DTAAFRSCLTEWPTAVIVKHLEHSLH Run BLAST on NCBI transcript from alignment at sc0000024:98802..100111 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003036 ID=TCONS_00003036|Name=TCONS_00003036|organism=Clytia hemisphaerica|type=transcript|length=1310bp|location=Sequence derived from alignment at sc0000024:98802..100111 (Clytia hemisphaerica)
CGCAGGCTTGACATGGCACACTTCATTTGTTGACCACAAACCTCATACGT
ACAACAAATTGGGTTTCAAGTTCACTCTCTTTTGTGAATAAAACCATCCA
AATATAATTAATCCCAACGGATTTAAAGAACGATGGCTCCTCTGTTGATC
CAACGAACTTGCAAACAGCTGTCCAATTTAGTGCAACGAATGTTCCAAGT
GTTTTACTATTACTGCCGTTGGCCACTCTGTCAGGCATGAACGAAACGCT
GCAGTATCCAAAAACTCTTGATCAAATCCTTGCAATAAATTCATTTTCGG
TGCGAAGAAACAAGCAAGGTATCCGACTTTCAAGGCATCAGATAATTTCC
CAAGAATCATTAAAGCGAGCTTTAAATAATCGTCGGATTGTTCAAGGCTT
CCAAACTCTTCTTGTGGCGTGTTCTCCAAAGTGAAAAGATGAACAGTCTT
AAGATGGTATGAAGGTAATTTTCGTTCAGTTTTGACGTCCACTAGATCAT
GCGTTTCTAAAGTGTAAATTAGTTTAGCCAATAAATagcttttcttttga
aaatgattcTGTTTTCTAGCTAAGATTCCTTCAGCTTGAGAGAAAGATAA
TCGCCATGTATCTTCTTGGTCTCTGATCGCCTTTCGAACGAAACCACACC
CGGCCTCACGAATTTCACGTACAATATCTGGCTCAGGCCAATAACGTTCG
CGTTCAAACCATCCTTCAGTTATATCGGGccaaaaatcaatttgaaaact
GACAGTATAGTCAAACTTCATTCTCCAAATCATTTCCTTTTCCgtcaaag
gaaaattttcaattttttgccaaaaagagaTATTCCCTGTTTTAAGGACG
TCATAAAGTGACATAGTTATCGCAGGACATCCTATTTTGGATGTACAACA
AGAGGCATAACCTTCCTCAAATGTTTCAAAGGTTTCTTCACCCTTTAACA
GTCGATAAATATTTGGCAAATCGTCAACTCCTTTTTTAATTACGTCATCA
TCAGTATCGATCAGATAATAGCCTGGATATTCTGTTTCGATCAAGAAAGA
ACTAGCctgttcttttgaaaatttctctatGATTAGCATAACATCAATGT
CATAGTTTGTGTTAACGGTGGGAATCATGAAAGGGACAAGAAATGCCCCA
TCTTGTAAACTGCCACTGATGATTAATTGGTTCCTCATTGGATCATCATC
ATCAAATAAGCCTCCAATCCATTCTCTTCTCACTTTTTCATCACACTCGt
aaaacttttccaaaaaagttttcATCACTGTTTGTAACTCCATAACCCTT
TCGTATGTCA Coding sequence (CDS) from alignment at sc0000024:98802..100111 >TCONS_00003036 ID=TCONS_00003036|Name=TCONS_00003036|organism=Clytia hemisphaerica|type=CDS|length=1131bp|location=Sequence derived from alignment at sc0000024:98802..100111 (Clytia hemisphaerica)
TTAGTGCAACGAATGTTCCAAGTGTTTTACTATTACTGCCGTTGGCCACT
CTGTCAGGCATGAACGAAACGCTGCAGTATCCAAAAACTCTTGATCAAAT
CCTTGCAATAAATTCATTTTCGGTGCGAAGAAACAAGCAAGGTATCCGAC
TTTCAAGGCATCAGATAATTTCCCAAGAATCATTAAAGCGAGCTTTAAAT
AATCGTCGGATTGTTCAAGGCTTCCAAACTCTTCTTGTGGCGTGTTCTCC
AAAGTGAAAAGATGAACAGTCTTAAGATGGTATGAAGGTAATTTTCGTTC
AGTTTTGACGTCCACTAGATCATGCGTTTCTAAAGTGTAAATTAGTTTAG
CCAATAAATagcttttcttttgaaaatgattcTGTTTTCTAGCTAAGATT
CCTTCAGCTTGAGAGAAAGATAATCGCCATGTATCTTCTTGGTCTCTGAT
CGCCTTTCGAACGAAACCACACCCGGCCTCACGAATTTCACGTACAATAT
CTGGCTCAGGCCAATAACGTTCGCGTTCAAACCATCCTTCAGTTATATCG
GGccaaaaatcaatttgaaaactGACAGTATAGTCAAACTTCATTCTCCA
AATCATTTCCTTTTCCgtcaaaggaaaattttcaattttttgccaaaaag
agaTATTCCCTGTTTTAAGGACGTCATAAAGTGACATAGTTATCGCAGGA
CATCCTATTTTGGATGTACAACAAGAGGCATAACCTTCCTCAAATGTTTC
AAAGGTTTCTTCACCCTTTAACAGTCGATAAATATTTGGCAAATCGTCAA
CTCCTTTTTTAATTACGTCATCATCAGTATCGATCAGATAATAGCCTGGA
TATTCTGTTTCGATCAAGAAAGAACTAGCctgttcttttgaaaatttctc
tatGATTAGCATAACATCAATGTCATAGTTTGTGTTAACGGTGGGAATCA
TGAAAGGGACAAGAAATGCCCCATCTTGTAAACTGCCACTGATGATTAAT
TGGTTCCTCATTGGATCATCATCATCAAATAAGCCTCCAATCCATTCTCT
TCTCACTTTTTCATCACACTCGtaaaacttttccaaaaaagttttcATCA
CTGTTTGTAACTCCATAACCCTTTCGTATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003036-exon-sc0000024-1491911889:98802..100111 | TCONS_00003036-exon-sc0000024-1491911889:98802..100111 | Clytia hemisphaerica | exon |
| TCONS_00003036-exon-sc0000024-1510915933:98802..100111 | TCONS_00003036-exon-sc0000024-1510915933:98802..100111 | Clytia hemisphaerica | exon |
| TCONS_00003036-exon-sc0000024-1575043694:98802..100111 | TCONS_00003036-exon-sc0000024-1575043694:98802..100111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:98802..100111 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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