TCONS_00003033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003033
Unique NameTCONS_00003033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003033 ID=TCONS_00003033|Name=TCONS_00003033|organism=Clytia hemisphaerica|type=transcript|length=814bp
TCATCACACATGTTACAAACACTTGTGACCGCTTCCAATTCATTCATCCC
CACTCCGTGAATCCCTACATTCAAACAGCGTTGAAGTTGTTTGTCAACCG
ATCAACGTTTCATGTCAGATCGACCCAGAAGATCAAAACCCAATATCAGA
TACGATATCTATGGTATTACCGGCAAGAAAGTCATAAAGCCAACATCTCC
GGAAGTTACCCATCCGCTAGCCGAAGAAGCTTATCATCCGCCAATGGAAG
AAGAAGCGATCAAACCCAGAGCTGATGGCATCATGGTGGAGACTGAATTA
AAGAAGCTTCTCATCGAAGAGTCTACTTTTCGAGATGAGATCACCGATGC
TATCCAAGAAAACTCACCAGGTAAAGAACTCATTACGGCTGATCAATTCA
AGCACCGAAAAAATCAAAGAGCTACGCCTTCAATATCGGTCCATCCACAA
AACCATTTCTGCATTGATGGATCCCAAGGTATACCAAACAAATTATCAAC
CGTTCTACACAGACATCACACATCAAGTGGTAGTGTATTTGCAACAATTG
AACATTCTCACTGAGGCTCACCATTCGGCAGAGGTCAATGCTGCCACTCA
CATCTCAACCAAACAAGCTTGTCTTTTAATTGACGAAATTGATCGCACAA
TCACTTACCTCAACGCAAGCTACACTTGTATTGCAACCCTCTCCAGTAAT
GAAGAACTCAAGCCGCGTAAATCACACATTGAGGAGCAATCCAAAGAGCT
GAAGGAAATACCATCAAAACTTCGTGAACTACTCGGCCTTCGTCCAGATA
TGGAGAAATACAAC
Run BLAST on NCBI

protein sequence of TCONS_00003033-protein

>TCONS_00003033-protein ID=TCONS_00003033-protein|Name=TCONS_00003033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MRSPMLSKKTHQVKNSLRLINSSTEKIKELRLQYRSIHKTISALMDPKVY
QTNYQPFYTDITHQVVVYLQQLNILTEAHHSAEVNAATHISTKQACLLID
EIDRTITYLNASYTCIATLSSNEELKPRKSHIEEQSKELKEIPSKLRELL
GLRPDMEKYN
Run BLAST on NCBI

transcript from alignment at sc0000024:35907..36720

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003033 ID=TCONS_00003033|Name=TCONS_00003033|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at sc0000024:35907..36720 (Clytia hemisphaerica)
GTTGTATTTCTCCATATCTGGACGAAGGCCGAGTAGTTCACGAAGTTTTG
ATGGTATTTCCTTCAGCTCTTTGGATTGCTCCTCAATGTGTGATTTACGC
GGCTTGAGTTCTTCATTACTGGAGAGGGTTGCAATACAAGTGTAGCTTGC
GTTGAGGTAAGTGATTGTGCGATCAATTTCGTCAATTAAAAGACAAGCTT
GTTTGGTTGAGATGTGAGTGGCAGCATTGACCTCTGCCGAATGGTGAGCC
TCAGTGAGAATGTTCAATTGTTGCAAATACACTACCACTTGATGTGTGAT
GTCTGTGTAGAACGGTTGATAATTTGTTTGGTATACCTTGGGATCCATCA
ATGCAGAAATGGTTTTGTGGATGGACCGATATTGAAGGCGTAGCTCTTTG
ATTTTTTCGGTGCTTGAATTGATCAGCCGTAATGAGTTCTTTACCTGGTG
AGTTTTCTTGGATAGCATCGGTGATCTCATCTCGAAAAGTAGACTCTTCG
ATGAGAAGCTTCTTTAATTCAGTCTCCACCATGATGCCATCAGCTCTGGG
TTTGATCGCTTCTTCTTCCATTGGCGGATGATAAGCTTCTTCGGCTAGCG
GATGGGTAACTTCCGGAGATGTTGGCTTTATGACTTTCTTGCCGGTAATA
CCATAGATATCGTATCTGATATTGGGTTTTGATCTTCTGGGTCGATCTGA
CATGAAACGTTGATCGGTTGACAAACAACTTCAACGCTGTTTGAATGTAG
GGATTCACGGAGTGGGGATGAATGAATTGGAAGCGGTCACAAGTGTTTGT
AACATGTGTGATGA

Coding sequence (CDS) from alignment at sc0000024:35907..36720

>TCONS_00003033 ID=TCONS_00003033|Name=TCONS_00003033|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000024:35907..36720 (Clytia hemisphaerica)
GTTGTATTTCTCCATATCTGGACGAAGGCCGAGTAGTTCACGAAGTTTTG
ATGGTATTTCCTTCAGCTCTTTGGATTGCTCCTCAATGTGTGATTTACGC
GGCTTGAGTTCTTCATTACTGGAGAGGGTTGCAATACAAGTGTAGCTTGC
GTTGAGGTAAGTGATTGTGCGATCAATTTCGTCAATTAAAAGACAAGCTT
GTTTGGTTGAGATGTGAGTGGCAGCATTGACCTCTGCCGAATGGTGAGCC
TCAGTGAGAATGTTCAATTGTTGCAAATACACTACCACTTGATGTGTGAT
GTCTGTGTAGAACGGTTGATAATTTGTTTGGTATACCTTGGGATCCATCA
ATGCAGAAATGGTTTTGTGGATGGACCGATATTGAAGGCGTAGCTCTTTG
ATTTTTTCGGTGCTTGAATTGATCAGCCGTAATGAGTTCTTTACCTGGTG
AGTTTTCTTGGATAGCATCGGTGATCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001664XLOC_001664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003033-exon-sc0000024-1491911889:35907..36720TCONS_00003033-exon-sc0000024-1491911889:35907..36720Clytia hemisphaericaexon
TCONS_00003033-exon-sc0000024-1510915933:35907..36720TCONS_00003033-exon-sc0000024-1510915933:35907..36720Clytia hemisphaericaexon
TCONS_00003033-exon-sc0000024-1575043694:35907..36720TCONS_00003033-exon-sc0000024-1575043694:35907..36720Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003033-proteinTCONS_00003033-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:35907..36720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46263	1.23718	1.04131	0.723672	0.201859	0.120684	0.337529	0.159797	0.111798	0.233694	0.118822	0.128356	0.0504957	0.240224	0.231413	0.168876	0.0627629	0.261211	0.0983879	0.380087	0.370329	0.143401	0.143296	0.179939	0.591993	0.24768	0.333075	0.646037	0.636029	0.85847
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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