TCONS_00003029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003029
Unique NameTCONS_00003029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003029 ID=TCONS_00003029|Name=TCONS_00003029|organism=Clytia hemisphaerica|type=transcript|length=576bp
AGACAAATCCATAAGCTGGGGCTCGATCGACACGTCGTGACAGACTTCAT
TCATCATGGTTGCCAGAGTATCGCGAACGTTGTTATGTCGATGGATAACG
TAGCCGCCAAGATGGCAAGATAGCACATGGTCGATTGTGAAGTTGGCTGA
GCAGGCACATTTGATGGGCAGTCGCTTCATTTCCGAGCCATACCTCATGT
GGAGTGCGTCAGCGAATTCACGTTTATTCAATACAAAATTCTCTTCTTTC
AGTGGAAGAGTGGTCAGCCACGAGGAAGCACCTTGAGATGAAGCGATTTC
CAAAGCTTTTTGGTTGATTGATGGGAGTAGTTCAACGATTTGATCGAGTG
ATCGTTTTTGTTCTCCAATTCGTTTAGCGGCTAGTGATTTCAACTTCTTT
TTCGATTGACTTGGATCAATTGATTCATTTGATTGTGTTATGATGCGCTC
GACTAGCACTTTAGTTGCCAAACGACTTGTTTCGTTTTGAAATTTAGCCT
CATCCTCGATGTTGATGATTCCAAGGCCTCCCATCTTGATCGGAAACGAG
AGGATCTTCCTTTCAATATCGGAGCA
Run BLAST on NCBI

protein sequence of TCONS_00003029-protein

>TCONS_00003029-protein ID=TCONS_00003029-protein|Name=TCONS_00003029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
CSDIERKILSFPIKMGGLGIINIEDEAKFQNETSRLATKVLVERIITQSN
ESIDPSQSKKKLKSLAAKRIGEQKRSLDQIVELLPSINQKALEIASSQGA
SSWLTTLPLKEENFVLNKREFADALHMRYGSEMKRLPIKCACSANFTIDH
VLSCHLGGYVIHRHNNVRDTLATMMNEVCHDVSIEPQLMDLS
Run BLAST on NCBI

transcript from alignment at sc0000024:16328..16903

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003029 ID=TCONS_00003029|Name=TCONS_00003029|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at sc0000024:16328..16903 (Clytia hemisphaerica)
TGCTCCGATATTGAAAGGAAGATCCTCTCGTTTCCGATCAAGATGGGAGG
CCTTGGAATCATCAACATCGAGGATGAGGCTAAATTTCAAAACGAAACAA
GTCGTTTGGCAACTAAAGTGCTAGTCGAGCGCATCATAACACAATCAAAT
GAATCAATTGATCCAAGTCAATCGAAAAAGAAGTTGAAATCACTAGCCGC
TAAACGAATTGGAGAACAAAAACGATCACTCGATCAAATCGTTGAACTAC
TCCCATCAATCAACCAAAAAGCTTTGGAAATCGCTTCATCTCAAGGTGCT
TCCTCGTGGCTGACCACTCTTCCACTGAAAGAAGAGAATTTTGTATTGAA
TAAACGTGAATTCGCTGACGCACTCCACATGAGGTATGGCTCGGAAATGA
AGCGACTGCCCATCAAATGTGCCTGCTCAGCCAACTTCACAATCGACCAT
GTGCTATCTTGCCATCTTGGCGGCTACGTTATCCATCGACATAACAACGT
TCGCGATACTCTGGCAACCATGATGAATGAAGTCTGTCACGACGTGTCGA
TCGAGCCCCAGCTTATGGATTTGTCT

Coding sequence (CDS) from alignment at sc0000024:16328..16903

>TCONS_00003029 ID=TCONS_00003029|Name=TCONS_00003029|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000024:16328..16903 (Clytia hemisphaerica)
TGCTCCGATATTGAAAGGAAGATCCTCTCGTTTCCGATCAAGATGGGAGG
CCTTGGAATCATCAACATCGAGGATGAGGCTAAATTTCAAAACGAAACAA
GTCGTTTGGCAACTAAAGTGCTAGTCGAGCGCATCATAACACAATCAAAT
GAATCAATTGATCCAAGTCAATCGAAAAAGAAGTTGAAATCACTAGCCGC
TAAACGAATTGGAGAACAAAAACGATCACTCGATCAAATCGTTGAACTAC
TCCCATCAATCAACCAAAAAGCTTTGGAAATCGCTTCATCTCAAGGTGCT
TCCTCGTGGCTGACCACTCTTCCACTGAAAGAAGAGAATTTTGTATTGAA
TAAACGTGAATTCGCTGACGCACTCCACATGAGGTATGGCTCGGAAATGA
AGCGACTGCCCATCAAATGTGCCTGCTCAGCCAACTTCACAATCGACCAT
GTGCTATCTTGCCATCTTGGCGGCTACGTTATCCATCGACATAACAACGT
TCGCGATACTCTGGCAACCATGATGAATGAAGTCTGTCACGACGTGTCGA
TCGAGCCCCAGCTTATGGATTTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001660XLOC_001660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003029-exon-sc0000024-1491911889:16328..16903TCONS_00003029-exon-sc0000024-1491911889:16328..16903Clytia hemisphaericaexon
TCONS_00003029-exon-sc0000024-1510915933:16328..16903TCONS_00003029-exon-sc0000024-1510915933:16328..16903Clytia hemisphaericaexon
TCONS_00003029-exon-sc0000024-1575043694:16328..16903TCONS_00003029-exon-sc0000024-1575043694:16328..16903Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003029-proteinTCONS_00003029-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:16328..16903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.793054	0.493253	1.29276	1.81666	0.358342	0.137324	0.437523	0.767568	0.0973819	0.80911	0.195879	0.329772	1.74146	1.12739	0.788215	0.204451	0.227661	0	0.805515	0.247664	0.464317	0	0.677756	1.0849	1.85367	1.04581	0.622882	0.252674	0.26411	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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