TCONS_00003016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003016
Unique NameTCONS_00003016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003016 ID=TCONS_00003016|Name=TCONS_00003016|organism=Clytia hemisphaerica|type=transcript|length=862bp
agaaaaaaaaacatgatgtCAAGTTGGATAAAGTCATTTATCATTTCTGC
GGTGGCATTTTTGATAGTTGAAGGAAAATTACGTTTCGTTGATTTGTCGT
TAAAATATGATGAGAAAAATACACCTTACTATGGTATCTATAAAAGCCAT
TTCAAGTTTCTTCAACAGTACGAATGAGCACGTGGGAACACACATTGATG
CTCCATTACACTTCGTTAAAGATGGACAGACTGTTGATCAGATACCTCTA
GAAAAATTAGTTGGTCCGCCGTATATAATTGACGTAGAGGCTGAGGTTGA
AAAGAATCGAAGTATGTACATTACAACCCAACATATAATGGATGCTGAGC
AGAAGCAGGGCAAAATTGAAAGTGGATCTATCTTATTGATACACACAGgt
tttagcAAGAGAGTTTCAAATTTTACTGACTATTATGGTGGCAACCATTC
CGACCCATCAACTTATGATTTTCCTGGCATGACTGGGGAGGCTGCTCAAT
GGATCGTTGACAATCGAGAGATTGCCTCCTTTGGCGTCGACACGCCATCT
TTCGATCACGCCAAGGGCGCCGATGACTGGTATCCAGTGCATCGAGTTTT
TCTGAACAAAAACATCTCTGGATTCGAAAATATGGATTTGTCCAAAATCA
ATGAATTTCGTGATAAGAAGGGCGTCTTGATTATCGCTCTTCCGATGAAA
ATTGCGGGCGGAACGGGTGGACCCACCCGTATTGTTGCTATGTATGATGA
CTCGGTGACAGTATCAGCCTCGTTTTCGTACTGCTATGTTGCTATGGTAT
CAATCATAGTCCCAGTCCTGGTTGCATTGGTTAATATGCTGTATTAAATG
AAAGATTCAAAT
Run BLAST on NCBI

transcript from alignment at sc0000024:806339..811697-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003016 ID=TCONS_00003016|Name=TCONS_00003016|organism=Clytia hemisphaerica|type=transcript|length=5359bp|location=Sequence derived from alignment at sc0000024:806339..811697- (Clytia hemisphaerica)
AGAAAAAAAAACATGATGTCAAGTTGGATAAAGTCATTTATCATTTCTGC
GGTGGCATTTTTGATAGTTGAAGGAAAATTACGTTTCGTTGATTTGTCGT
TAAAATATGATGAGAAAAATACACCTTACTATGGTATCTATAAAAGCCAT
TTCAAGTTTCTTCAACAGGTAAAGGTCCATTTATCTAGAATGTGATTGCC
CTTCTCTTATCTGAGCCGCTCTTGTTGCCTGTGGGAGAGGGGCAACCATT
TTAGTGTCAACTATTTACATTCGACTGTCTTTAACTCGAAATTCTGTTAT
TCCAATCTTTCTGTAATTTGTACTAAAATATGTGGTCCCCTTAGCTAAAG
ACTATAGTAAATTACTCTCTGTAATTCGAATCTTTCTCTTATTCGAATAA
AATTTTTGGTTCCTTTAAGATCAAATTAAAAAGAGTGACTTATATATCCA
ATATGATAACTTTTATTTATCAATCTGACAGGTTTCAGAACCATATCCAA
AGTTTCAACTTGGTTACAATGTTTTTAGTACGAATGAGCACGTGGGAACA
CACATTGATGCTCCATTACACTTCGTTAAAGATGGACAGACTGTTGATCA
GATACCTCTAGAAAAATTAGTAAGTATACTTAATTACACATCTAAAAGAA
ATTTGCATTTTTGTTCAACTATACTCACTTCCCCTTCTCATAGAATCAGT
AGGATTTTCCCAGCTGATAATGGGAAAACTAACGGACTGAAACCCGGGAT
TGATAAATGCTTTTTATGGCTGGGATTTGAATTCCATTGTTTTCAAGTCA
CGAAATCTAGTTGGAATCGAAAATAGCATAATACTTTGCAGTGAGGATTT
GTATANCCTTAAAATCTTCTCTTTTTTAGTGATAAGCCATATAGACTACA
TCTGCTAAGACTTCGATCGAGCAACATCTCTAAATGCCAAGCAAACTGCA
GGAGAAGAATTCAGCCATGTGATGAATCGGTTGTCCCATCGTTCTGAGCC
AGTAGGTTTTTCAATTCATGTGGAAAAGAAAGGGAAGTGAAAGGTGGGGT
CTTATTCAAATGAAGATTGTTTAAAATAATTTGATTCCAGAAGATACGCT
TCTGTTGAGAGTTTTGATAACACTAGAATTGAAATTGACACAAAATCAAA
ATGGACCCATTACGCAATTCAGAATTTTATATTCCTGAAACTATATCCGG
GGGGCGGTATGTGCCGCCCTTAAGGGTACCTTTTTGAATTACTAAATTCC
CAGTAAGAGACAGAGAAGAGAAATAGGAAAATTTCAACTTTTTACTCCAG
GAAAGATCAAAATTTGGTCAAAGTTGTCTCAATAAGGGTCCTAAAATTCA
CAAAATGTTCCTTTGTTTTCTCCTTTTTAGTCCCGGTAAGGGTCCAAGGG
TCGAAAGTCAGGCGGCAACCCCCCGTCAGCTTGCAACCCAAGTACCCCTT
CCCCTGGAGCTATATAGAAGTTTCTCAATTTGTGAAGACCTTCTTTTCTC
GTTGTAAATGGCTATTTTTTAATATCTGAAGAAACTATGAATCAAAGTTT
TTATTTCTTTATTGCAACAAAGACACGTGTACACTACGAACATATATTAC
AAAACATTACTTAAACATAAGATAGAGTCCCTCCCCCGCTAGGAACTAAC
GTTATAGGTACTATACTATGTAAAAGAAAAGAAAAAAATAAATGAGTAAA
TTAAAAACAAAATCTTGGAGAAGGAAGCTACAATTGTTAGGTAAAAGCCT
AAAATAAAGCACCGCTAAACCTTCCAGCTTCGTTAAGAAATTCAACAACA
GAACAAAGAATAGATTTATTTAGATTTGAATTCAAACTTTCATCCCCATA
TAATAAAAGCCGACAGAAAAAAGGAGGGTTAAGCGGCGGATGAAAAATAA
TGCCTAGGGTCTGAAGTTTGTCGAACAAAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTCTTA
CTTCCTATGTTTGGATCATTTAAAGAGTTGCCAAGACGAGAAAAATAACT
ATCCTTGGCAGTCTTGATGGCCAATCTGCACCTGTCAACCATGTTATCAA
GTGTCTGACCATCTAAAGGATTTCCCCATTTTCTCCAACGACGATTTACA
ACTGGGGACAACTGCTCATTCAGGAGATTTGAGTTGCAGTGCAGATGTAT
TCGCTGAGTACTGTAAACTGGCTGTGAATATAGAGACAGGGTAAGGCTGT
ATATGGACTGAAGGGAGATTAATTATCTTGATATGCTATTATTCAGGTTG
GTCCGCCGTATATAATTGACGTAGAGGCTGAGGTTGAAAAGAATCGAAGT
ATGTACATTACAACCCAACATATAATGGATGCTGAGCAGAAGCAGGGCAA
AATTGAAAGTGGATCTATCTTATTGATACACACAGGTTTGGATACAATTG
TTATAACTTTTCTCGTGGGTACTGGTAAAGTCGAAAATTCTACAGATATA
TCACCACGTTACTAACCGGCAAGTTGTCTAGCTTGACCCCCCTGCATCAA
TAGTTGTTTTTTAGCCTTTTTCACAAAATTTTATCTTCTAAGAGGTTCTA
CCCCAGATTTCCAGGGCAGGGCAGTATAATTTGTTCATCAAAATTTCCAG
GGAGAGTTGGTGTCGGTACTCCTGTTTGAATGTTGTTTTTTTTTGGAATA
ACCCATTAAACGAAGTCCAAAACTACATATTCTTAATGAGGTGGAGATCG
CCTACAATAAAGGTCATAATATTTTGATAATTTTGGTTATTTTAACGTTC
TTCAAGATTTAAAGTTCCGGCGAGAAAGTCGATTTTGGGCTATCTCTTTA
ATTTAATCGAATATTTCAATTCGGAAGGGGTTGGCAGACTTACAGGCTAT
ATTCTGAGCCTTATTGGACTATTTTTGAACTTTTGGATCCTCAGATCTTA
AGTTTCATATTAAAATTCAGAGTTAAAACTCTACCCTTCCAACCTACTTT
AGAGCATTTACAAATCGCTTGTGGTTCAAAAACTTCCCGGTGTATTTCCC
TCTTTTCTCAAATATTATGACCTTGATTGTAGCAAGAATTCAAATTTGTT
CGGCGTAATGGTTTGCTAAAATTTACTGTATTCTTGCTAGTCTAGCAGGA
CAGGCTATGCGTGATTAGGGCTATTAAAGGTTTTGTTTTGAATAAGACTG
ATATCGTTTGCTGGCTCATTAATTTTATAGTACAAGCTTTTTTATATTGA
ATTGACACGGATGTGGATCAGGATTGGTCAGAAAGAGAAAAAGAAAAACA
TTTTTCGCTTATATCAGCATAATATAACAATAGGCAGTCACTGTCCTGAT
ATGAAATATGTGTGTGATATCAGACGGAAACACTTATTCTAAAAATAAAA
CCTTAGATAAAACTTAAAAGTTTACTATTTGTGTCCTAATTTTCAGGTTT
TAGCAAGAGAGTTTCAAATTTTACTGACTATTATGGTGGCAACCATTCCG
ACCCATCAACTTATGATTTTCCTGGCATGACTGGGGAGGCTGCTCAATGG
ATCGTTGACAATCGAGAGGTATAACAGAGAACTTAGATATTCGTAATCTT
TGAACCCTAACCCAAGTGTTAACACAAATGCAAGGTCTTGACAGATCTCA
CTACAACCTCGCAAAAACATTGCGCAATGAGTATCATAGATTAACAAACT
TTCTCTCATATTTATAGATTGCCTCCTTTGGCGTCGACACGCCATCTTTC
GATCACGCCAAGGGCGCCGATGACTGGTATCCAGTGCATCGAGTTTTTCT
GAACAAAAACATCTCTGGATTCGAAAATATGGATTTGTCCAAAATCAATG
AATTTCGTGATAAGAAGGGCGTCTTGATTATCGCTCTTCCGATGAAAATT
GCGGGCGGAACGGGTGGACCCACCCGTATTGTTGCTATGTATGATGACTC
GGTGACAGTATCAGCCTCGTTTTCGTACTGCTATGTTGCTATGGTATCAA
TCATAGTCCCAGTCCTGGTTGCATTGGTTAATATGCTGTATTAAATGAAA
GATTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001650XLOC_001650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003016-exon-sc0000024-1575043694:811530..811697TCONS_00003016-exon-sc0000024-1575043694:811530..811697Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1575043694:811079..811169TCONS_00003016-exon-sc0000024-1575043694:811079..811169Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1575043694:807963..808101TCONS_00003016-exon-sc0000024-1575043694:807963..808101Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1575043694:806830..806951TCONS_00003016-exon-sc0000024-1575043694:806830..806951Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1575043694:806339..806680TCONS_00003016-exon-sc0000024-1575043694:806339..806680Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1510915933:811530..811697TCONS_00003016-exon-sc0000024-1510915933:811530..811697Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1510915933:811079..811169TCONS_00003016-exon-sc0000024-1510915933:811079..811169Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1510915933:807963..808101TCONS_00003016-exon-sc0000024-1510915933:807963..808101Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1510915933:806830..806951TCONS_00003016-exon-sc0000024-1510915933:806830..806951Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1510915933:806339..806680TCONS_00003016-exon-sc0000024-1510915933:806339..806680Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1491911889:811530..811697TCONS_00003016-exon-sc0000024-1491911889:811530..811697Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1491911889:811079..811169TCONS_00003016-exon-sc0000024-1491911889:811079..811169Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1491911889:807963..808101TCONS_00003016-exon-sc0000024-1491911889:807963..808101Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1491911889:806830..806951TCONS_00003016-exon-sc0000024-1491911889:806830..806951Clytia hemisphaericaexon
TCONS_00003016-exon-sc0000024-1491911889:806339..806680TCONS_00003016-exon-sc0000024-1491911889:806339..806680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:806339..811697 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.59897e-06	0	1.51739	1.75842	0	0	0.210104	1.2001	0.9701	1.87735	0	0	0	0.889916	2.83174	0	1.30382	0	2.48372e-05	7.3677e-08	0.0331681	2.24922	0.709124	4.20984	0	0.521484	0.556542	0.193749	0.436607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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