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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003014 ID=TCONS_00003014|Name=TCONS_00003014|organism=Clytia hemisphaerica|type=transcript|length=2445bpRun BLAST on NCBI protein sequence of TCONS_00003014-protein >TCONS_00003014-protein ID=TCONS_00003014-protein|Name=TCONS_00003014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp MAEVPPGFYQEELNKSVWVVPDRYQNLNTIGTGAYGQVCSAMDTQTGTQIRun BLAST on NCBI transcript from alignment at sc0000024:682458..702160- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003014 ID=TCONS_00003014|Name=TCONS_00003014|organism=Clytia hemisphaerica|type=transcript|length=19703bp|location=Sequence derived from alignment at sc0000024:682458..702160- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:682458..702160- >TCONS_00003014 ID=TCONS_00003014|Name=TCONS_00003014|organism=Clytia hemisphaerica|type=CDS|length=14157bp|location=Sequence derived from alignment at sc0000024:682458..702160- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003014 vs. Swiss-Prot (Human)
Match: MK14 (Mitogen-activated protein kinase 14 OS=Homo sapiens GN=MAPK14 PE=1 SV=3) HSP 1 Score: 488.419 bits (1256), Expect = 1.254e-165 Identity = 229/351 (65.24%), Postives = 281/351 (80.06%), Query Frame = 1
Query: 52 MAEVPPGFYQEELNKSVWVVPDRYQNLNTIGTGAYGQVCSAMDTQTGTQIAIKKLSRPFQSIMHAKRAHREIKLLKHMMHENVICLLDTFTPQKTLSEFNDVYLVTPLMGADLNSIVKVQNLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNENCELKILDFGLARIGAEEGMTGYVATRWYRAPEIMLNWMQYNSKVDIWSVGCIMAELLTRTTLFPGNDHIDQLTKIMQLVGKPSEMFLNRITSANARTYILSMPAFEKQSFDRIFPNATPVARDILDHMLNLDPTERFSAEDCLKHSYFASYHDPEDEPTASPFDVGYAESAELTIDQFKELMFNEIKNFV 1104
M++ P FY++ELNK++W VP+RYQNL+ +G+GAYG VC+A DT+TG ++A+KKLSRPFQSI+HAKR +RE++LLKHM HENVI LLD FTP ++L EFNDVYLVT LMGADLN+IVK Q L+D+HVQFLIYQ+LRGLKYIHSA IIHRDLKPSN+AVNE+CELKILDFGLAR +E MTGYVATRWYRAPEIMLNWM YN VDIWSVGCIMAELLT TLFPG DHIDQL I++LVG P L +I+S +AR YI S+ K +F +F A P+A D+L+ ML LD +R +A L H+YFA YHDP+DEP A P+D + ES +L ID++K L ++E+ +FV
Sbjct: 1 MSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQSF-ESRDLLIDEWKSLTYDEVISFV 349 The following BLAST results are available for this feature:
BLAST of TCONS_00003014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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