|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003009 ID=TCONS_00003009|Name=TCONS_00003009|organism=Clytia hemisphaerica|type=transcript|length=3070bpRun BLAST on NCBI transcript from alignment at sc0000024:589200..627004- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003009 ID=TCONS_00003009|Name=TCONS_00003009|organism=Clytia hemisphaerica|type=transcript|length=37805bp|location=Sequence derived from alignment at sc0000024:589200..627004- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003009 vs. Swiss-Prot (Human)
Match: MCM10 (Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=1 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 8.844e-47 Identity = 126/389 (32.39%), Postives = 203/389 (52.19%), Query Frame = 3
Query: 750 CGYEFVGISIRNPMISSAVLDERMKGRRVIKISHIESKMKNYDIEG-DWVTMGVLVDKMPQKTTSNGKNFSVWKLSDLGMGSENVLMAFFLFGEVNKEHWKTQNGAVIALLNPSITKRKE-DNSISISIDNPKKLMEIGTSRDLATCKGVRKSDGRSCTMFINKQYGDYCEFHVQKAFKKAKAGRMELQSGGSKG------PRNGTTSKNQKGHLMNDMKKSIDMGDYHYGGKTLSLSENKKRNNVKLQKTSNXXXXXXXXLRSIVSSDVKALAAKDLQETKMKREKQKLELQGGTEEFKELLNVPTVGARNLHK-LLKGDQVKEEEIKVPKSKCNSARSFLRNTKQ---------------EFLQTNPQLNRNLSPSIPKPDPAQKKR 1844
C F G+ +R P +SS ++++M GR++I++S I+ KM +E DWVT GV++ K+ ++ ++GK FS+WKL+DL ++ V + FLFGEV+K WKT+ G V+ +LN + K K+ + +SID+P+K++ +G + DL TCK +K +G CT +N + +YC++HVQ +KK A R +LQS S G R GT+ +K+ + ++YGG + + V +K +++ +S+ V +QET+ K + L +EEFKEL+++PT GARNL + L K P K SA + L+ KQ FLQ++ ++ PS + PAQ R
Sbjct: 246 CVEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTPQSVNSGKTFSIWKLNDLRDLTQCV--SLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKA-KKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFARRGTS-----------LKERLCQDGFYYGGVSSASYAASIAAAVAPKK----------KIQTTLSNLVVKGTNLIIQETRQKLGIPQKSL-SCSEEFKELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASALLKQQKQRMLEMRRRKSEEIQKRFLQSSSEVESPAVPSSSRQPPAQPPR 609 HSP 2 Score: 92.4337 bits (228), Expect = 6.793e-19 Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 3
Query: 2547 IQKIRSKGGI----HDNEDKKNKQQTSE--HIKARLENSLDKSNDEGDENDEVPKKKRKKGLLQDIFGELDPNSEEAIKLHKAKSKNVGAVRLAEAEREDKYFAALEKKEAMEQKMINTTEIKVRLYACKVCNYKAESLLKKCLDEKHLHVKLPDRIKRFFACKNCKHKAIGYDCL 3056
I K+R+KG + + N KK ++ + +K R+E + S+ DE + KK+R++ L+ SEE K+ KAKSK+ G ++ AEAE +++YF L KKE ME+KM N E+K R+ CK C Y LL+ C+ E+H D +KRFF C C +++I D L
Sbjct: 663 ITKLRAKGQVLTKTNPNSIKKKQKDPQDILEVKERVEKNTMFSSQAEDELEPARKKRREQ------LAYLE--SEEFQKILKAKSKHTGILKEAEAEMQERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQH-EYHWHDGVKRFFKCP-CGNRSISLDRL 828 The following BLAST results are available for this feature:
BLAST of TCONS_00003009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.