TCONS_00003001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003001
Unique NameTCONS_00003001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003001 ID=TCONS_00003001|Name=TCONS_00003001|organism=Clytia hemisphaerica|type=transcript|length=1139bp
GGGTTTAGACAGTCAGTTTGCGTTCATTGAGGTGGTATTATCCTCACTCA
CTGATGAATATCCGAGGTATTTGCGAAGATATAAAGAACTTGCTACACTG
GTCATGTGTGCTATCGCGTTCCTTCTTGGTATACCTACAGTGTTACAGGC
TGGAGCATACATTGTGGAGATTTTCAACACACAGGCTGGAGGTTTATCTC
TTCTCTTCCTGGCTTTCTTTGAATCACTGGCCATTGGTTGGATTTACGGA
GCTGATCGTTTACTAGACAATGTGGAAACCATGATCGGTTATAAACCAAG
CCGTTGGTGGTTGTTatgttggaaatattttgcacCAATCATCATCTTAG
TGACCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAA
GAATATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTT
CAGTTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAG
CACATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGA
GAGactTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAATCCAAGAAAT
CGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTGGCAACGAAA
AGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTACTATTCCTC
CCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCATCTTTCAAG
GacgcagaaaaaaagtttggtaCATGCTATGTCTTGCACTGTCTCTGAAT
TTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAATATAACCAT
AAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAATAGGAACAC
TATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTGACGTTTAGT
TCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCAATTAGATTT
AGAACAATAGAccttattggagtttttttttcttaaaaagtgatgtacag
ggtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaagt
tttatgtgcgtgttcacaaaattgtattttaagctctcc
Run BLAST on NCBI

transcript from alignment at sc0000024:306496..319292-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003001 ID=TCONS_00003001|Name=TCONS_00003001|organism=Clytia hemisphaerica|type=transcript|length=12797bp|location=Sequence derived from alignment at sc0000024:306496..319292- (Clytia hemisphaerica)
GGGTTTAGACAGTCAGGTGAGAGTTGAGTAATCTTTTTTATTCTTGGGCA
AGATCATCATGGGTTTTGATTTCCCTTTTACTAAGCTAACTTGATCGCCC
TGGGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTCTGACTCTTGGGAAA
GATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCCT
GGGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTCTGACTCTTGGGAAAG
ATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCCTG
GGTTTAGACAGTCAGGTGAGAGTTGAGTAATCTTTTTGATTATTGGGAAA
GATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCCT
GGGTTTAGACAGTCAGGTAAGAGTTGAGTAATCTTTTTTATTCTTGGGCA
AGATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCC
TGGGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTTTGACTCTTGGGCAA
GATCATCATGTACAGAAGGGTTTTGATTTCCCTTTTACTAATCTGAATTT
ATTTACCTCACAGCCCAATCATAGTTTCCACGCTATCGGTCAAAAGAAAA
ATGAAGCAATTCCATTGGTGCGATCTGACGTAACGGTTGAAAAAAATTGA
AATGTAGTCAACCTTTTTTTTCGAGCGCACGCTACATTTTTATGACGTAA
TCTTTTTTTCCAAGCAAAAAGGGTTGAAGCGAGAAGGTGTGATCGCAGCG
TGCGCAAGTGTAGATCGGCCTTAAGAATTGAAGTCGTTTCTCATATGTTA
AAAGTCTTACATTAGGTTTTGTTTAACCTTAGTTTGCGTTCATTGAGGTG
GTATTATCCTCACTCACTGATGAATATCCGAGGTATTTGCGAAGATATAA
AGAACTTGCTACACTGGTCATGTGTGCTATCGCGTTCCTTCTTGGTATAC
CTACAGTGTTACAGGTATTTACTTAACTTTTTTACAACTTTTCTATCTGT
TCTCAAATACAACTAACCTAAAATCTGACAATGTGTCTGTCTGGCATCTA
TGTCTTTATAATCGTTTATCATCTAATTTAAGAAATAGTTGAACTCGCGC
AACGCACTTGGCTTAACTACAGTAGCTTCAAATTATTCATAGACCCGATT
GTAGGCCTCGAAGATCAATACTTTTGAAAAGTGAAAAATAAAACAACCCA
TGATATTCACCAAATTCGACCATTTCCAGACCATAGATTTATAAAACCCG
AAGGGCTAAATTTCGTGCGTTAAGCCATCGCAGGCAAAAAAAAAGTGAAT
TTCGGGAAAAATATTGTTGCTACTGTTTTTAAAAACCCGGAAGCTTCTGA
ATAGTCAAGTGCTGAAATTCTATTGTAATGTCACGTGCTAACCACGGCAC
ACTTTTCAGGAAAAAGTACGTCATATGATATTCGTGATGTAATATTTTAT
TTGATTGACACTTTTTAATTCGATCTTCACGGGACAATTTTCTCCGCAAT
AAAGCAAAATTCGAATGAGTTTTTTAAACGGTTTGCCAGTTCAAGGGACC
AAGGATATAGCTTGAATTTAATAAAAATTCGAATTATAGAAAGTTGAATT
ACCGAGAGTTGATTGTATATCTAGAAAAGTCGTTTTCCGCAGTGGAGGTA
ACCTGAAAGGCTCCTTTTTCAATAGTTATTTACCATCACATTTAGCTTTA
TTTTCTGAAAAATATCAGAAATTTAAGTGATATGTGTTTACTTTGAGTTT
ATGAAATTATCTTTGAAATGTATTTTAATTATTCAACTGTGCTATTTAAT
GAAATCTAGTTCAAAATCGAACTTTTAATAAACTTAAAAAAAAGCTCTAG
CATCTAGGTCGAGATCTCTATTGTCGGCGAATGCTGACATTGGCAAAAAA
ATCGAAAATGCTCTTGTCGGTACGCAAAGTGTTAATTTGCCTGGAAGGGT
TCAAATAATGACATCAGTCTTTTTTATTTATTATCCAAATATGCTAATGA
GCTGAATACGAAATAAAAAAACATTCGATTTTGGAGAAAACCTTAACCAT
AGTCATACTAGGCTTCTAGAAGCGGATCCTTGTCATATAAGGTAACTTTT
GACAATAACAAACAGTTTTTGATGACGACACGTGACAAATGAGAGGAAAT
TGAAAATTTCCTTTGTTCTTATCAAAAGCTATTGTAAACGAACAAAGGCT
TTAGAAAAAAGTTCCCTGTACTTAAAATGCCTATTTCATCCTAAATATTC
AATGAATAATTCGGAAAAACAAGGGCTATGTTTTAAGCTATTTGGGTGGT
ATTGCGAAATATCATAATTCCATTAGCTTCTCTGTTAGCTTATAATTCTG
AAAGTTGAAAAAAAATTTGAGTCTCTTTTAAGTCGAACCTCTACAAGTTT
GCTCTGATCTTTTAAACCTAACTCCATAACTTAAATTTTCTTAACTCCAT
AACCCGTTTATGTATTTGTATACAAAAAATTTTTTTCTAAAAACTTGATC
ACTTTTTGGTATTTCTTTACGACGAAGCTATTGAGAAACGTCGGGATTTC
AGAGATTAAGGCAGAGAGAAAAGAGAAGAGAAGCGGGCCCTATCCAGGGA
TAGTTTCCTACCCCTAGATGGGGAAATCACAGCGCTACCAGACATTGGAC
TTTGTAATCGCGACACATCAGAGCCGTGCTGTATTGATGATGATACTCGC
ACAGTACGGGAGAACGTTGCATTCTCGCAGGTACTGACCATATCATACTG
AGTATCATCACCACACCACATTCAATGTCCGGCATATCTACCCATAGTCT
TGTATCAGAGTGATGGTACCCTATTCGCCTCACATGACATGGGTTGACCC
GTGCCAAGATACATTCACTAGCCAAGTGGATCGTAGCACCGAGTGGGGAT
CGGACCCTGACCTCCAGCACAAAATTCAAGAACGATGACCACTACACTAC
CACGCCGAAATTAAGGCAGGAAACAATAAAATATCAACAAACAAGATAAG
CAAGCTTTCATTGTATTGCATTTCCTTAAGTATTGTAAATAATACTTAAT
TAATCCATAATTTAGCAAAATACTAAAAATATTTGGTAAAAATCATTCCT
GGTTAAAAATAATAATATAATTAGCAAGATACACGCTTTTTTTTATAAGA
ATATCTTCCATAAGAATATCAGGGTGAAAATTTGCCAAATCGTAAGAATA
CCCTAAGAATACCCTTTAGGGTGAATTTTACAGAACTTAATAAGCATACA
GTCATTTTGTATTTGGTTAACAGAAAAAACTGCCTCCTTTGTTAGATATA
AATTGAAGCTTAAAGAGTTTGCATATGAGATGAATTAAACAAATGACAGC
TTTTTAACAAATTACTTTTTCCACAAAGTAATAAGAATTGAGGAATTGAT
CGAATTGTCGGTATCGCTGACATCCTCAGAGCCACGTACATAAGCCGAAG
AATTGCTTTCAGAATCTGGCCTAGCCCGGTAGCCATTTATGGCTTTTTGA
TAGACTTGGTGGCGCTGATAAGTGGCCCGGTGTAATTTGGCTGACTCGAT
TTTTTGGCTTTGCTTGAGGTGGTAGCAAATCCAGACCGACAAGACCCAGT
CCCTTTTTGGAGAAAAACAAACAGAAAACAATGACCAATAGATCAATTCT
TTTTAAATTTTAGAGATATGTTTTTGTTTTATTATAGTTTCATAAACTCT
GATGAGGCTTTATATTTCATTATTTTGGTGTTTTTATATGATTTTTGAAA
ACGAAAGTAAAAAAATTTAAGAAGGCAAAATCCTCTAGTCTACTTCGCTG
GACTCAGCGCCATTAAAATCATCAAAAAGTTCAGTCAGAAGTAGAATCTA
GTATAATTCTGACAAGTCTTTTTATCTGAAGAATCAAATTTCAGAAAACA
CTAAAACTTTTCCTATATACAAATATTTGTCTTTGTAAAATATGTATATA
AAAAAAAATTTTTTATCTTATATTCTTCATTATATAATTAGTTTATTCTC
TACGGTTGGTATTAATTAGTATTTTATTATTACTATGGCAGACCAACAAT
AAATAAATTGGAAAATAAAAAAAAATAAAAATATATCATATGACAACTAT
CAAATGACCAATGAATTTTAACACCCAAAATCCTAAAAGACAAAAGACAA
AACAAACCAAATTTCACTAGAGACACATTACTAGAGCAATTAAAATAAAT
TTAGCGAATAGAAAACCAATATTTAAAATGAAAAGAGATCTAAACCGAAA
GAAAATGGGAAAAGTATGAAAAGATGAAGACCGAAGTCTGAGATCAGGTG
CTGTACCTAGAGTAAGCATCCACTTTCAATTCCCCCCTTCACTGCAATAA
GGTTAGTTGTACACCTCAGCATGTTATAACAATCGTGGAAGCTTGAGTCT
AAGTTCATCCCGTGAAAGATTGGGCCGAGGTCTTTCTCTTGAAAAAAGAT
AACTGTGGACCAATCGAAACCAAAAGCAGCATGTGTTTCAACAATCAAAT
TGTTCCCTTCCTGAAGAAACTTGTACGGATTTTCTCCTTCTTTAAAATCA
TTTTTCTCTCCGTGAAACTCTTTGTAGCTCTCCTTTAACTGATTCAGAAT
AGTACAATAGTTTGGTAGGTTATCGTCTAAGTCAACAATTATGAGTATTC
CTTCGTTTGTTCGTTTCCTCGCTTCTTTCACTGCTTCTTCAAACGTTTCG
ACAAACATTGGTTCGCAACCACCTGGAAAATTGTCTAGTGGCATGACGAT
ACCTTCTTTGTATTTATATGCTCTCTTATCGGCTACTGATTTTGTTGCCT
TGACAATCTGTTGAGTATTCCTAAAATTCTGTTTGAGATTGACCAAAGAA
AAGCGTGTCGAAAAATAATCGTAACTTGAACTATGACTTGGAATATTTGT
TGTTGGCACAATCCATAAGAAGTCAACGAGTGATATCAGCTTTTCCCATT
TCAAGTTATCCATACTGAACATTTTACATTCATCGATGAACAATGCTTTG
ATGTCACGTGATTTGATCGTCTCGGCTAAGTCTGTGAATTCCTATTTAAA
TAAAATTTGTAAACATGGTTATAATTTTTGATTTCGAAACTTAACGAAAT
GATTTCCTTTTGATATTAACCCCCGCATACCCAAATGGCGTGTATATACG
TTGAAAATTAGTTAATATACCGAGTCCCCTCGCTATAACTCCTGACTTCT
CGATTTAAAAGGGCATAAACAACAACTATTGTCTAACTCTCAAGTTACAA
GCTTTTATGGCAGTTTGTAATTTTTGATTTAAAAAAAATGCTATGCGCTG
AAAAGGTTAAAGGTTTTTTAAGTTGGCTGACGGTAAATTATGAAAAAAAA
GAAAAAAATCAAAAAATCCCAAAGATTTGCTTGAAGAAACCCGATTTGAT
TTTAATGGTAGTCTTTTTTCAGATTTTTTGCTCAAAGTTGTAAATACCGA
GTGTTTCAAAAAAAATTATAGAGATATTGTAATTTCTTGAATTTGACCGA
AAGAAATTACATACTACATGGAAACATTCTAATGAGTTGACGCCAATTTT
TATTACTTAATATTGATATGGAGAAAAGGTTTATTGGTTGATCAAAGAAT
TCCTTAAAACTTACCCACTCATCCTGGAAACGTTCAACAAATATACCATG
ACCCTCCTCAAGATCGATTTTCAGACGGTAATATAACATTGACTTTAGTC
TTTGAACTCTCAAATCCAAAAAAGCCATCATAACTTTTCCATTGTACTCA
AGTCGTTTGTTTAATTGTATTGCTTTTTGCGTAAGCAAGATTGACTTTCC
ACCACCAAAAGGCCCAACAATGATCACTCTCCTGTATCGCGGGTCATCGT
TGTTCATTATTGCCATCTGTTGGTTGGAGTAGAATAAAATGTTGTGGCTA
GTTGAAACATTTTCGATTGCATTGCTTGTGTATTCGACCCATGTTGAGCT
TGTGATGGGTGCGACTTGATCTTTTTTCGATACGTGAATTGCAAAAACCA
GGATTTTAAGAAGGTTCTTTGCTTCATCCAAAGGATCCGGTGTGGACGTT
GCAGCAACAGCTGGGAATCTGTTGAAAATACTAGTTAACCATGGTTGAAT
GTTGGTTTCCATAGTGATGTAGTGTAGAGTGTTGACTGAAAGTGCATCAT
TTTCGACACAGATCACCGGGAAATATGTCCAGCCTGGTTTGAGTTGATCT
CCTAGTCTCTCCTCGAAGATCTGATGACTTTTTTCCAATTGCTTGAAGAC
TTTATCATCTGCAATTGTTCGTTTCAGCTCAATCGAGATGATAAGTTTCC
TTTCCCAAGATATGATCAGAAAGTCCGTCTCTTTATGCATTTTATATTGC
ACGTTTGTCAGAAAGATGAGCGAAGAAAGAACAGCTGTATTTTGGAGAAT
GTCATCTTTTAATGGTAGAAGCTGATCATAAAAGAAATGTTCAAGCTTTT
CGCCAACTTCTGACAGTTCCAATGTGAATAACCATCGAAGGTTTGAATCG
TTGCTCGGTGTATCGTCAATCATTTGCTTGATCATCTTTCTGAGGTTTTT
CGCCCATAGATTTTGTTGGAGAAGTGTTCCAAGAGGTGATGTGGGCGAGA
TCACTGCAAGACATCCTTGAACGAAAACTCCTATATCGAAAGTGGTTTGT
GGCAGGGTCACTTGGTCAGTTTTAAGCTCTGCAATAACCAGATACATGAT
TTGAAGGTTAACAATAAATTTATCAAACGCCTTCTTGTCGATAGTATTAG
CATTGTTTTGCGTTTGCATAAAAGCTTCCAATTCTTTGGTCAGCCAATAC
GTCGGTGAATGTTGTTTCAAATTAACCAAAAGTCTATCGATGTCTTTTTT
GACGTCATAATTAAGGATAGCGGTAGAGGACTTTTTGTACTGACTCGAAA
CAAACGTGGGTGGTATGAAAACACTTTTGCGTTCACTTTGAATGAAAAGA
GAACTGTCTCCATACTCCCTTTCGAGAATGAAGTCGGCTGCATCGATAGG
ATTCGCTGTGCAATGTGTATTGCCAAGATTAAACTGTTTTGCTTGTCTTT
CTGACGTTGATTGTCTGTTATTGAGAATCTGCTGATACAACGATTTGTTG
AGAGTACATCTGGTTGGATCGATTGTTAACGGTTTCAATGACAAAACTTT
CTGCTTAATAGAAGCCAAATTTTGTGTCTGAGCAGCCATCTTTATTACAA
CAACTTGAAAATGCGTTCAAAACATTCAAACTCTTGTACTCATAAACGAT
ATGTAGATAATAAAAGATTGTTGTTTTTTTTGCTTCTCAGAGCAATATTT
CGAGGAAAACAATCATTTAAATAATGCATAGAATGCATCTTTTTTTTATT
AGAGCAACTCTATCATATAAGAACAAATATGGTAGACTTTGTTAGCCAAA
ACGTGTTTTCGATCAGAACGTTTATCAATCATAAGCATAGAAAAACCCTA
GACTTCAAAACCAAAACTTTAAGAATGAGTCTAGGGAACCATTTCAAGAC
TTTACGGGAAATTACGCCAACACACAAACATTTTACGCACATGTTTAAAC
TTTAAAACCTAAAGAGTCAAGAAAATCCGTACGCTTCGAAAATTGTGACG
TTCTTATGTAACACGTGTATCTGAATGTTTGTTTTAGACTTCCCCAGTTT
GCATTGACAAGCTTCTGAAACTTGAGTGTACGTTTTAGATTTCCCTCTAA
CCTTATCATTGATTTAGTAATTTACACGTTTTTTTATAAGAACATCCAAA
ATTTTTGAAGCCTTTGAATGTTCTTAACTTTTTAAGTTTTAAGCCTAAAA
ATATTCTTACCATGCTCTTTTTTTCGTCATTTTTGTCCATTTTCATATGA
AGTTCGGTGTATTAGAGTCTGCAAAGCCTTAAAAATGTTTTTAACTTGTT
CTTAACATTTTGTTCTTATAAAAAGAAACGTGTAGCATGCTACCATGTAT
CAGTCATTGCAACATTATATAACAAATAACTACTATGACCACCGAAATAA
CTATATAATAATAACTTTATTATTATGTTATGACTGACCCGTATTATAGA
AACTTTTAGTAAGCGATATAGGTAATTTTGAATTTTTCCCGAAAAAAAAC
GTCATTTTTCTCATACATCTTTAACCGTTTATATTTTCAATTTTTTATTT
GATTTTATCACTAGGCTGGAGCATACATTGTGGAGATTTTCAACACACAG
GCTGGAGGTTTATCTCTTCTCTTCCTGGCTTTCTTTGAATCACTGGCCAT
TGGTTGGATTTACGGAGCTGATCGTTTACTAGACAATGTGGAAACCATGA
TCGGTTATAAACCAAGCCGTTGGTGGTTGTTATGTTGGAAATATTTTGCA
CCAATCATCATCTTAGGTATGCGTGACCCTTAGACCACGAGGGACGCGTA
TATGCGTCCAAAACAAGCCAAAATACTGAGTCTCACACTTGAGGCCATAG
CTACTGACCACTTGATTTAAAGGGGCATAAACCGAATGCTTTTAGAAAGA
CTATACAATTAGCTTTCTAATGTTACCAAAACCATCTTCTAAATCAAAAG
CTACCAGATTTTATGGCACTTTAAAGTTTTGAGTTTCAAAAAAAAATCAG
AAAAATTTCAACTTTTTCAAAAAAACAGCGCGCACTAAATGTTAATATGC
ACCATTGCAATGTCTTCCACGGATCCAACAGCTGATTGGTTGAAAGTGAC
GTATTGACAGCTACTGATTCCGTGATATAATGTCAGAAGACAATGCAATT
GATTTCTATTTGATTGAGATACTCAACTTTGAAATGAAGATCTCAAAGCA
CTAACTGTAGATTCGATATTTGTTGTCCATAGCCTAGTCTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CTAGCCCCTGTATCTATAAGGCTGGAACACCGGATTCTTCCAGTCGTTTA
TACAAACTAAATCCCGTTTTATTATTATTAGTATTACACGCATTATAAAA
GACTCCAGTCTATCCATAGCCTAGTTATTCAATTGTTTTCACGGCGTCCA
CGGCCAGCCGGCATGGCTATCTATCAAATGAATGGAACATCGGAAGGAGC
AGGGATTCAAACCGTGAACCCTGGTTTTAGGAACCGCGAACCCCCGGTTT
TAGGAACCGCTAATCCCCGGTTTTAGGCACTGGCGCCGTGACCACAGGGT
CATTGTTCCATAAGACTGACTAGTATACTCATTTCTTGCGCATCTGCAAT
TTTACATTAGATTTCTTTTGTGCATGAGTACACATATTTTATTCATAGTG
ACCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAAGA
ATATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTTCA
GTTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAGCA
CATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGAGA
GGTAAGTTTTCCCCGATTTCTCATTTTCTAATCCCAATCGGAATAAATCA
CATTTTGTTGTGTGAAGCACATAGAACATCAAGTTATTCCGTTTCAGACT
ACAGCTTTTAAGAAGTTGAGTAGGTCTATTTCATACACGTTTTAGATAAT
TTTAAGAACATTGAAACAGGCGAAGAACATTTTTAAGCTTAAAACTATAA
AAGTTAAGAACATCTGAAGGCTTCAAAATATTTGGTTGTTCTTATAAAAA
AACGCATTTATGAAGTGGATTTATTTCTTATTTTATAATCAGAAATTTGA
TGCCTTTTGACAAATATTTTGAAAACGATGTGCGTTGCTAACATATGAGG
ACCGCAAAAGAGAAAAGAGAGATTGAACCATAATGATATTTTAGATGTAA
GACGTATATAAACTTTTGAGTGAACTGAGAAAGTGCTAGATAAACAACAA
CATAAGACACGTGTATGGCGTAAAACTCTCTGACCGAATTGGTTGGCAAA
ATTCATGATATTCATTACGTAATGTTTTCTACGGAGACACCCTGGTTTTT
GCTACTCTGTACCAGAGTGTATCTCACGTTTATCGCTTTGTAGTACACTC
AGTGTGCATTGTCTGTTTGATAAAAAAATTCCCGTACGGAGACCTCTGTG
ATGAAGTATGATTTATAAATAGCAGCACTTGTCTTCCCCTCTCACAAACA
CTCCATGGCAGCGGTCGGTTTAAAAAATCTCAAATGACAAAAGACAATGA
CAACAGACCCTCTACGGCAATGAATTTTAAAATAAGCTATAGATACTGGG
TCTGTGTACCGACAAGGTTTTTGCCAGTAGTGGCTAATTTCCAACAATTT
TTCTCTAGCTTAAATTTCTTGAATTTACTACTACTAATGTGCAAAAAACC
GGGGTGTTTTCGCAAAAGAAACCCCCCGTCAAAAGATTATGTTTCCAAGT
CTCACGTTGTAAATATCTTCTTTGTTGTTCTATTCCATGGGCTTTTCCAG
AAAAGTTTTGTACATGGGGGGTAGAGGATATATTGGATATTTTGTCCGGG
GTGGGGGGGTTAGTGGAAAATCTGCAAAATTTGCCTTGTTTTTGTTGTTT
GCTCTGTTTAGGGGTAATTTTGAATGTCCGGGGGTCAGCTAATGATTGTC
CGGGGGTAAGCTCTGTTGTCCGGGGGGTCATAATTAACTATGTTTGGGGG
TAATTTTGAATGTCCGGGGGTCAGCTAATGATTGTCCGGGGGTAAGCTCT
GTTGTCCGGGGGGTCATAATTAACTATGTTTGGGGGTAATGGACATTATA
TCCTCCCCCCCCCCCCCCATATTAAAATTTTTTCTTGAAAAGCCCCATTT
CGTTTAAGTTTACACAACCAACAATTTCCTGCCTTCCTTTCTAATGTCTG
CTCTTCGAAGAGAACTTTTGAAGAAAATACAGGTGTAGTCTCCATAACTC
GAAAACGCACGAGGAACACAAATTTGTTCGAGTTAAGGAAATTTCGAAAT
ATGGAGTATGGTTTATAAGGCTCTGCTAATGGGACTAGAGAACTTATTCG
AGTTATAGAGTTCCATTATAGCAATAAGTTTTAATATACTCTCAGGTTCC
GAATAAACGGAACCCCCCCCCCCCCCCTTGTTAATTTTTCGATTTTTTTC
CAACCCCCCGGGCCTTTTTAGGGCCCCCCCCCCCCCCCCCCCTTTTTAAT
TTTTCGATTTTTTTCCAACCCCCCGGACCTTATTAGGCCCCCCCCCCCCG
TTTATTAATTTTTGAAAAATTCCCAGCTACCAAAAAGAAAATTCCTTGTT
TTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACCCTTTTTAACGTTTT
TAAAGGTTCATTTTTCAACACCCCCGGAAATTAGCCCCCCACCCCTGTTT
ATTCGGCACTTGGGAGTACTATGTCAAAAGCAGAACTTGTATTTCTTTTT
CTTTTTTTCAGACTTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAATC
CAAGAAATCGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTGG
CAACGAAAAGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTAC
TATTCCTCCCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCAT
CTTTCAAGGACGCAGAAAAAAAGTTTGGTACATGCTATGTCTTGCACTGT
CTCTGAATTTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAAT
ATAACCATAAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAAT
AGGAACACTATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTGA
CGTTTAGTTCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCAA
TTAGATTTAGAACAATAGACCTTATTGGAGTTTTTTTTTCTTAAAAAGTG
ATGTACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTGAG
TAGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTAAGCTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001643XLOC_001643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003001-exon-sc0000024-1575043694:319277..319292TCONS_00003001-exon-sc0000024-1575043694:319277..319292Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1575043694:318279..318410TCONS_00003001-exon-sc0000024-1575043694:318279..318410Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1575043694:310877..311078TCONS_00003001-exon-sc0000024-1575043694:310877..311078Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1575043694:309042..309244TCONS_00003001-exon-sc0000024-1575043694:309042..309244Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1575043694:306496..307081TCONS_00003001-exon-sc0000024-1575043694:306496..307081Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1510915933:319277..319292TCONS_00003001-exon-sc0000024-1510915933:319277..319292Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1510915933:318279..318410TCONS_00003001-exon-sc0000024-1510915933:318279..318410Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1510915933:310877..311078TCONS_00003001-exon-sc0000024-1510915933:310877..311078Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1510915933:309042..309244TCONS_00003001-exon-sc0000024-1510915933:309042..309244Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1510915933:306496..307081TCONS_00003001-exon-sc0000024-1510915933:306496..307081Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1491911889:319277..319292TCONS_00003001-exon-sc0000024-1491911889:319277..319292Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1491911889:318279..318410TCONS_00003001-exon-sc0000024-1491911889:318279..318410Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1491911889:310877..311078TCONS_00003001-exon-sc0000024-1491911889:310877..311078Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1491911889:309042..309244TCONS_00003001-exon-sc0000024-1491911889:309042..309244Clytia hemisphaericaexon
TCONS_00003001-exon-sc0000024-1491911889:306496..307081TCONS_00003001-exon-sc0000024-1491911889:306496..307081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:306496..319292 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0698617	0	6.2677e-10	0.0472851	0.453805	0	0.300506	0.957539	0.00931448	0.311578	0.0225686	0.454844	0.906289	1.19498e-05	0.279595	0.204052	0.75687	0.596787	1.43201	0.194052	0.96929	0.102903	0.490115	0.232342	0	0	0.864583	1.0956	0.42725	0.464789
Blast
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BLAST of TCONS_00003001 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 8.494e-35
Identity = 76/212 (35.85%), Postives = 122/212 (57.55%), Query Frame = 2 
Query:    2 GLDSQFAFIEVVLSSLTDEYPRYLRRYKELATLVMCAIAFLLGIPTVLQAGAYIVEIFNT-QXXXXXXXXXXXXXXXXIGWIYGADRLLDNVETMIGYKPSRWWLLCWKYFAPIIILVTFLYGIADWGGIKFGKEYVYPGWAEGVGWLLAFSSMVTIPIGMAHTLYKAHKTXXXXXXXXXXXFRETLRIAFSPNEERIQEIEQARMEKANTA 634
            G+DSQF  +E  +++L DEYPR LR  +EL    +C I++L+G+  + Q G Y+ ++F+   A G+SLLFL FFE ++I W YG +R  DN++ M+G +P  WW LCW +F PII+   F++       +  G  YV+P W +GVGWL+A SSMV IP  MA+       +            ++ +++   P+E+ ++        +A ++
Sbjct:  393 GIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMG-NYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGS-----------LKQRIQVMVQPSEDIVRPENGPEQPQAGSS 592
The following BLAST results are available for this feature:
BLAST of TCONS_00003001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A18.494e-3535.85Sodium- and chloride-dependent GABA transporter 1 ... [more]
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