TCONS_00002998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002998
Unique NameTCONS_00002998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002998 ID=TCONS_00002998|Name=TCONS_00002998|organism=Clytia hemisphaerica|type=transcript|length=1139bp
GGGTTTAGACAGTCAGTTTGCGTTCATTGAGGTGGTATTATCCTCACTCA
CTGATGAATATCCGAGGTATTTGCGAAGATATAAAGAACTTGCTACACTG
GTCATGTGTGCTATCGCGTTCCTTCTTGGTATACCTACAGTGTTACAGGC
TGGAGCATACATTGTGGAGATTTTCAACACACAGGCTGGAGGTTTATCTC
TTCTCTTCCTGGCTTTCTTTGAATCACTGGCCATTGGTTGGATTTACGGA
GCTGATCGTTTACTAGACAATGTGGAAACCATGATCGGTTATAAACCAAG
CCGTTGGTGGTTGTTatgttggaaatattttgcacCAATCATCATCTTAG
TGACCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAA
GAATATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTT
CAGTTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAG
CACATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGA
GAGactTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAATCCAAGAAAT
CGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTGGCAACGAAA
AGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTACTATTCCTC
CCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCATCTTTCAAG
GacgcagaaaaaaagtttggtaCATGCTATGTCTTGCACTGTCTCTGAAT
TTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAATATAACCAT
AAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAATAGGAACAC
TATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTGACGTTTAGT
TCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCAATTAGATTT
AGAACAATAGAccttattggagtttttttttcttaaaaagtgatgtacag
ggtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaagt
tttatgtgcgtgttcacaaaattgtattttaagctctcc
Run BLAST on NCBI

transcript from alignment at sc0000024:306496..318993-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002998 ID=TCONS_00002998|Name=TCONS_00002998|organism=Clytia hemisphaerica|type=transcript|length=12498bp|location=Sequence derived from alignment at sc0000024:306496..318993- (Clytia hemisphaerica)
GGGTTTAGACAGTCAGGTGAGAGTTGAGTAATCTTTTTGATTATTGGGAA
AGATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCC
TGGGTTTAGACAGTCAGGTAAGAGTTGAGTAATCTTTTTTATTCTTGGGC
AAGATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACC
CTGGGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTTTGACTCTTGGGCA
AGATCATCATGTACAGAAGGGTTTTGATTTCCCTTTTACTAATCTGAATT
TATTTACCTCACAGCCCAATCATAGTTTCCACGCTATCGGTCAAAAGAAA
AATGAAGCAATTCCATTGGTGCGATCTGACGTAACGGTTGAAAAAAATTG
AAATGTAGTCAACCTTTTTTTTCGAGCGCACGCTACATTTTTATGACGTA
ATCTTTTTTTCCAAGCAAAAAGGGTTGAAGCGAGAAGGTGTGATCGCAGC
GTGCGCAAGTGTAGATCGGCCTTAAGAATTGAAGTCGTTTCTCATATGTT
AAAAGTCTTACATTAGGTTTTGTTTAACCTTAGTTTGCGTTCATTGAGGT
GGTATTATCCTCACTCACTGATGAATATCCGAGGTATTTGCGAAGATATA
AAGAACTTGCTACACTGGTCATGTGTGCTATCGCGTTCCTTCTTGGTATA
CCTACAGTGTTACAGGTATTTACTTAACTTTTTTACAACTTTTCTATCTG
TTCTCAAATACAACTAACCTAAAATCTGACAATGTGTCTGTCTGGCATCT
ATGTCTTTATAATCGTTTATCATCTAATTTAAGAAATAGTTGAACTCGCG
CAACGCACTTGGCTTAACTACAGTAGCTTCAAATTATTCATAGACCCGAT
TGTAGGCCTCGAAGATCAATACTTTTGAAAAGTGAAAAATAAAACAACCC
ATGATATTCACCAAATTCGACCATTTCCAGACCATAGATTTATAAAACCC
GAAGGGCTAAATTTCGTGCGTTAAGCCATCGCAGGCAAAAAAAAAGTGAA
TTTCGGGAAAAATATTGTTGCTACTGTTTTTAAAAACCCGGAAGCTTCTG
AATAGTCAAGTGCTGAAATTCTATTGTAATGTCACGTGCTAACCACGGCA
CACTTTTCAGGAAAAAGTACGTCATATGATATTCGTGATGTAATATTTTA
TTTGATTGACACTTTTTAATTCGATCTTCACGGGACAATTTTCTCCGCAA
TAAAGCAAAATTCGAATGAGTTTTTTAAACGGTTTGCCAGTTCAAGGGAC
CAAGGATATAGCTTGAATTTAATAAAAATTCGAATTATAGAAAGTTGAAT
TACCGAGAGTTGATTGTATATCTAGAAAAGTCGTTTTCCGCAGTGGAGGT
AACCTGAAAGGCTCCTTTTTCAATAGTTATTTACCATCACATTTAGCTTT
ATTTTCTGAAAAATATCAGAAATTTAAGTGATATGTGTTTACTTTGAGTT
TATGAAATTATCTTTGAAATGTATTTTAATTATTCAACTGTGCTATTTAA
TGAAATCTAGTTCAAAATCGAACTTTTAATAAACTTAAAAAAAAGCTCTA
GCATCTAGGTCGAGATCTCTATTGTCGGCGAATGCTGACATTGGCAAAAA
AATCGAAAATGCTCTTGTCGGTACGCAAAGTGTTAATTTGCCTGGAAGGG
TTCAAATAATGACATCAGTCTTTTTTATTTATTATCCAAATATGCTAATG
AGCTGAATACGAAATAAAAAAACATTCGATTTTGGAGAAAACCTTAACCA
TAGTCATACTAGGCTTCTAGAAGCGGATCCTTGTCATATAAGGTAACTTT
TGACAATAACAAACAGTTTTTGATGACGACACGTGACAAATGAGAGGAAA
TTGAAAATTTCCTTTGTTCTTATCAAAAGCTATTGTAAACGAACAAAGGC
TTTAGAAAAAAGTTCCCTGTACTTAAAATGCCTATTTCATCCTAAATATT
CAATGAATAATTCGGAAAAACAAGGGCTATGTTTTAAGCTATTTGGGTGG
TATTGCGAAATATCATAATTCCATTAGCTTCTCTGTTAGCTTATAATTCT
GAAAGTTGAAAAAAAATTTGAGTCTCTTTTAAGTCGAACCTCTACAAGTT
TGCTCTGATCTTTTAAACCTAACTCCATAACTTAAATTTTCTTAACTCCA
TAACCCGTTTATGTATTTGTATACAAAAAATTTTTTTCTAAAAACTTGAT
CACTTTTTGGTATTTCTTTACGACGAAGCTATTGAGAAACGTCGGGATTT
CAGAGATTAAGGCAGAGAGAAAAGAGAAGAGAAGCGGGCCCTATCCAGGG
ATAGTTTCCTACCCCTAGATGGGGAAATCACAGCGCTACCAGACATTGGA
CTTTGTAATCGCGACACATCAGAGCCGTGCTGTATTGATGATGATACTCG
CACAGTACGGGAGAACGTTGCATTCTCGCAGGTACTGACCATATCATACT
GAGTATCATCACCACACCACATTCAATGTCCGGCATATCTACCCATAGTC
TTGTATCAGAGTGATGGTACCCTATTCGCCTCACATGACATGGGTTGACC
CGTGCCAAGATACATTCACTAGCCAAGTGGATCGTAGCACCGAGTGGGGA
TCGGACCCTGACCTCCAGCACAAAATTCAAGAACGATGACCACTACACTA
CCACGCCGAAATTAAGGCAGGAAACAATAAAATATCAACAAACAAGATAA
GCAAGCTTTCATTGTATTGCATTTCCTTAAGTATTGTAAATAATACTTAA
TTAATCCATAATTTAGCAAAATACTAAAAATATTTGGTAAAAATCATTCC
TGGTTAAAAATAATAATATAATTAGCAAGATACACGCTTTTTTTTATAAG
AATATCTTCCATAAGAATATCAGGGTGAAAATTTGCCAAATCGTAAGAAT
ACCCTAAGAATACCCTTTAGGGTGAATTTTACAGAACTTAATAAGCATAC
AGTCATTTTGTATTTGGTTAACAGAAAAAACTGCCTCCTTTGTTAGATAT
AAATTGAAGCTTAAAGAGTTTGCATATGAGATGAATTAAACAAATGACAG
CTTTTTAACAAATTACTTTTTCCACAAAGTAATAAGAATTGAGGAATTGA
TCGAATTGTCGGTATCGCTGACATCCTCAGAGCCACGTACATAAGCCGAA
GAATTGCTTTCAGAATCTGGCCTAGCCCGGTAGCCATTTATGGCTTTTTG
ATAGACTTGGTGGCGCTGATAAGTGGCCCGGTGTAATTTGGCTGACTCGA
TTTTTTGGCTTTGCTTGAGGTGGTAGCAAATCCAGACCGACAAGACCCAG
TCCCTTTTTGGAGAAAAACAAACAGAAAACAATGACCAATAGATCAATTC
TTTTTAAATTTTAGAGATATGTTTTTGTTTTATTATAGTTTCATAAACTC
TGATGAGGCTTTATATTTCATTATTTTGGTGTTTTTATATGATTTTTGAA
AACGAAAGTAAAAAAATTTAAGAAGGCAAAATCCTCTAGTCTACTTCGCT
GGACTCAGCGCCATTAAAATCATCAAAAAGTTCAGTCAGAAGTAGAATCT
AGTATAATTCTGACAAGTCTTTTTATCTGAAGAATCAAATTTCAGAAAAC
ACTAAAACTTTTCCTATATACAAATATTTGTCTTTGTAAAATATGTATAT
AAAAAAAAATTTTTTATCTTATATTCTTCATTATATAATTAGTTTATTCT
CTACGGTTGGTATTAATTAGTATTTTATTATTACTATGGCAGACCAACAA
TAAATAAATTGGAAAATAAAAAAAAATAAAAATATATCATATGACAACTA
TCAAATGACCAATGAATTTTAACACCCAAAATCCTAAAAGACAAAAGACA
AAACAAACCAAATTTCACTAGAGACACATTACTAGAGCAATTAAAATAAA
TTTAGCGAATAGAAAACCAATATTTAAAATGAAAAGAGATCTAAACCGAA
AGAAAATGGGAAAAGTATGAAAAGATGAAGACCGAAGTCTGAGATCAGGT
GCTGTACCTAGAGTAAGCATCCACTTTCAATTCCCCCCTTCACTGCAATA
AGGTTAGTTGTACACCTCAGCATGTTATAACAATCGTGGAAGCTTGAGTC
TAAGTTCATCCCGTGAAAGATTGGGCCGAGGTCTTTCTCTTGAAAAAAGA
TAACTGTGGACCAATCGAAACCAAAAGCAGCATGTGTTTCAACAATCAAA
TTGTTCCCTTCCTGAAGAAACTTGTACGGATTTTCTCCTTCTTTAAAATC
ATTTTTCTCTCCGTGAAACTCTTTGTAGCTCTCCTTTAACTGATTCAGAA
TAGTACAATAGTTTGGTAGGTTATCGTCTAAGTCAACAATTATGAGTATT
CCTTCGTTTGTTCGTTTCCTCGCTTCTTTCACTGCTTCTTCAAACGTTTC
GACAAACATTGGTTCGCAACCACCTGGAAAATTGTCTAGTGGCATGACGA
TACCTTCTTTGTATTTATATGCTCTCTTATCGGCTACTGATTTTGTTGCC
TTGACAATCTGTTGAGTATTCCTAAAATTCTGTTTGAGATTGACCAAAGA
AAAGCGTGTCGAAAAATAATCGTAACTTGAACTATGACTTGGAATATTTG
TTGTTGGCACAATCCATAAGAAGTCAACGAGTGATATCAGCTTTTCCCAT
TTCAAGTTATCCATACTGAACATTTTACATTCATCGATGAACAATGCTTT
GATGTCACGTGATTTGATCGTCTCGGCTAAGTCTGTGAATTCCTATTTAA
ATAAAATTTGTAAACATGGTTATAATTTTTGATTTCGAAACTTAACGAAA
TGATTTCCTTTTGATATTAACCCCCGCATACCCAAATGGCGTGTATATAC
GTTGAAAATTAGTTAATATACCGAGTCCCCTCGCTATAACTCCTGACTTC
TCGATTTAAAAGGGCATAAACAACAACTATTGTCTAACTCTCAAGTTACA
AGCTTTTATGGCAGTTTGTAATTTTTGATTTAAAAAAAATGCTATGCGCT
GAAAAGGTTAAAGGTTTTTTAAGTTGGCTGACGGTAAATTATGAAAAAAA
AGAAAAAAATCAAAAAATCCCAAAGATTTGCTTGAAGAAACCCGATTTGA
TTTTAATGGTAGTCTTTTTTCAGATTTTTTGCTCAAAGTTGTAAATACCG
AGTGTTTCAAAAAAAATTATAGAGATATTGTAATTTCTTGAATTTGACCG
AAAGAAATTACATACTACATGGAAACATTCTAATGAGTTGACGCCAATTT
TTATTACTTAATATTGATATGGAGAAAAGGTTTATTGGTTGATCAAAGAA
TTCCTTAAAACTTACCCACTCATCCTGGAAACGTTCAACAAATATACCAT
GACCCTCCTCAAGATCGATTTTCAGACGGTAATATAACATTGACTTTAGT
CTTTGAACTCTCAAATCCAAAAAAGCCATCATAACTTTTCCATTGTACTC
AAGTCGTTTGTTTAATTGTATTGCTTTTTGCGTAAGCAAGATTGACTTTC
CACCACCAAAAGGCCCAACAATGATCACTCTCCTGTATCGCGGGTCATCG
TTGTTCATTATTGCCATCTGTTGGTTGGAGTAGAATAAAATGTTGTGGCT
AGTTGAAACATTTTCGATTGCATTGCTTGTGTATTCGACCCATGTTGAGC
TTGTGATGGGTGCGACTTGATCTTTTTTCGATACGTGAATTGCAAAAACC
AGGATTTTAAGAAGGTTCTTTGCTTCATCCAAAGGATCCGGTGTGGACGT
TGCAGCAACAGCTGGGAATCTGTTGAAAATACTAGTTAACCATGGTTGAA
TGTTGGTTTCCATAGTGATGTAGTGTAGAGTGTTGACTGAAAGTGCATCA
TTTTCGACACAGATCACCGGGAAATATGTCCAGCCTGGTTTGAGTTGATC
TCCTAGTCTCTCCTCGAAGATCTGATGACTTTTTTCCAATTGCTTGAAGA
CTTTATCATCTGCAATTGTTCGTTTCAGCTCAATCGAGATGATAAGTTTC
CTTTCCCAAGATATGATCAGAAAGTCCGTCTCTTTATGCATTTTATATTG
CACGTTTGTCAGAAAGATGAGCGAAGAAAGAACAGCTGTATTTTGGAGAA
TGTCATCTTTTAATGGTAGAAGCTGATCATAAAAGAAATGTTCAAGCTTT
TCGCCAACTTCTGACAGTTCCAATGTGAATAACCATCGAAGGTTTGAATC
GTTGCTCGGTGTATCGTCAATCATTTGCTTGATCATCTTTCTGAGGTTTT
TCGCCCATAGATTTTGTTGGAGAAGTGTTCCAAGAGGTGATGTGGGCGAG
ATCACTGCAAGACATCCTTGAACGAAAACTCCTATATCGAAAGTGGTTTG
TGGCAGGGTCACTTGGTCAGTTTTAAGCTCTGCAATAACCAGATACATGA
TTTGAAGGTTAACAATAAATTTATCAAACGCCTTCTTGTCGATAGTATTA
GCATTGTTTTGCGTTTGCATAAAAGCTTCCAATTCTTTGGTCAGCCAATA
CGTCGGTGAATGTTGTTTCAAATTAACCAAAAGTCTATCGATGTCTTTTT
TGACGTCATAATTAAGGATAGCGGTAGAGGACTTTTTGTACTGACTCGAA
ACAAACGTGGGTGGTATGAAAACACTTTTGCGTTCACTTTGAATGAAAAG
AGAACTGTCTCCATACTCCCTTTCGAGAATGAAGTCGGCTGCATCGATAG
GATTCGCTGTGCAATGTGTATTGCCAAGATTAAACTGTTTTGCTTGTCTT
TCTGACGTTGATTGTCTGTTATTGAGAATCTGCTGATACAACGATTTGTT
GAGAGTACATCTGGTTGGATCGATTGTTAACGGTTTCAATGACAAAACTT
TCTGCTTAATAGAAGCCAAATTTTGTGTCTGAGCAGCCATCTTTATTACA
ACAACTTGAAAATGCGTTCAAAACATTCAAACTCTTGTACTCATAAACGA
TATGTAGATAATAAAAGATTGTTGTTTTTTTTGCTTCTCAGAGCAATATT
TCGAGGAAAACAATCATTTAAATAATGCATAGAATGCATCTTTTTTTTAT
TAGAGCAACTCTATCATATAAGAACAAATATGGTAGACTTTGTTAGCCAA
AACGTGTTTTCGATCAGAACGTTTATCAATCATAAGCATAGAAAAACCCT
AGACTTCAAAACCAAAACTTTAAGAATGAGTCTAGGGAACCATTTCAAGA
CTTTACGGGAAATTACGCCAACACACAAACATTTTACGCACATGTTTAAA
CTTTAAAACCTAAAGAGTCAAGAAAATCCGTACGCTTCGAAAATTGTGAC
GTTCTTATGTAACACGTGTATCTGAATGTTTGTTTTAGACTTCCCCAGTT
TGCATTGACAAGCTTCTGAAACTTGAGTGTACGTTTTAGATTTCCCTCTA
ACCTTATCATTGATTTAGTAATTTACACGTTTTTTTATAAGAACATCCAA
AATTTTTGAAGCCTTTGAATGTTCTTAACTTTTTAAGTTTTAAGCCTAAA
AATATTCTTACCATGCTCTTTTTTTCGTCATTTTTGTCCATTTTCATATG
AAGTTCGGTGTATTAGAGTCTGCAAAGCCTTAAAAATGTTTTTAACTTGT
TCTTAACATTTTGTTCTTATAAAAAGAAACGTGTAGCATGCTACCATGTA
TCAGTCATTGCAACATTATATAACAAATAACTACTATGACCACCGAAATA
ACTATATAATAATAACTTTATTATTATGTTATGACTGACCCGTATTATAG
AAACTTTTAGTAAGCGATATAGGTAATTTTGAATTTTTCCCGAAAAAAAA
CGTCATTTTTCTCATACATCTTTAACCGTTTATATTTTCAATTTTTTATT
TGATTTTATCACTAGGCTGGAGCATACATTGTGGAGATTTTCAACACACA
GGCTGGAGGTTTATCTCTTCTCTTCCTGGCTTTCTTTGAATCACTGGCCA
TTGGTTGGATTTACGGAGCTGATCGTTTACTAGACAATGTGGAAACCATG
ATCGGTTATAAACCAAGCCGTTGGTGGTTGTTATGTTGGAAATATTTTGC
ACCAATCATCATCTTAGGTATGCGTGACCCTTAGACCACGAGGGACGCGT
ATATGCGTCCAAAACAAGCCAAAATACTGAGTCTCACACTTGAGGCCATA
GCTACTGACCACTTGATTTAAAGGGGCATAAACCGAATGCTTTTAGAAAG
ACTATACAATTAGCTTTCTAATGTTACCAAAACCATCTTCTAAATCAAAA
GCTACCAGATTTTATGGCACTTTAAAGTTTTGAGTTTCAAAAAAAAATCA
GAAAAATTTCAACTTTTTCAAAAAAACAGCGCGCACTAAATGTTAATATG
CACCATTGCAATGTCTTCCACGGATCCAACAGCTGATTGGTTGAAAGTGA
CGTATTGACAGCTACTGATTCCGTGATATAATGTCAGAAGACAATGCAAT
TGATTTCTATTTGATTGAGATACTCAACTTTGAAATGAAGATCTCAAAGC
ACTAACTGTAGATTCGATATTTGTTGTCCATAGCCTAGTCTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCTAGCCCCTGTATCTATAAGGCTGGAACACCGGATTCTTCCAGTCGTTT
ATACAAACTAAATCCCGTTTTATTATTATTAGTATTACACGCATTATAAA
AGACTCCAGTCTATCCATAGCCTAGTTATTCAATTGTTTTCACGGCGTCC
ACGGCCAGCCGGCATGGCTATCTATCAAATGAATGGAACATCGGAAGGAG
CAGGGATTCAAACCGTGAACCCTGGTTTTAGGAACCGCGAACCCCCGGTT
TTAGGAACCGCTAATCCCCGGTTTTAGGCACTGGCGCCGTGACCACAGGG
TCATTGTTCCATAAGACTGACTAGTATACTCATTTCTTGCGCATCTGCAA
TTTTACATTAGATTTCTTTTGTGCATGAGTACACATATTTTATTCATAGT
GACCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAAG
AATATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTTC
AGTTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAGC
ACATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGAG
AGGTAAGTTTTCCCCGATTTCTCATTTTCTAATCCCAATCGGAATAAATC
ACATTTTGTTGTGTGAAGCACATAGAACATCAAGTTATTCCGTTTCAGAC
TACAGCTTTTAAGAAGTTGAGTAGGTCTATTTCATACACGTTTTAGATAA
TTTTAAGAACATTGAAACAGGCGAAGAACATTTTTAAGCTTAAAACTATA
AAAGTTAAGAACATCTGAAGGCTTCAAAATATTTGGTTGTTCTTATAAAA
AAACGCATTTATGAAGTGGATTTATTTCTTATTTTATAATCAGAAATTTG
ATGCCTTTTGACAAATATTTTGAAAACGATGTGCGTTGCTAACATATGAG
GACCGCAAAAGAGAAAAGAGAGATTGAACCATAATGATATTTTAGATGTA
AGACGTATATAAACTTTTGAGTGAACTGAGAAAGTGCTAGATAAACAACA
ACATAAGACACGTGTATGGCGTAAAACTCTCTGACCGAATTGGTTGGCAA
AATTCATGATATTCATTACGTAATGTTTTCTACGGAGACACCCTGGTTTT
TGCTACTCTGTACCAGAGTGTATCTCACGTTTATCGCTTTGTAGTACACT
CAGTGTGCATTGTCTGTTTGATAAAAAAATTCCCGTACGGAGACCTCTGT
GATGAAGTATGATTTATAAATAGCAGCACTTGTCTTCCCCTCTCACAAAC
ACTCCATGGCAGCGGTCGGTTTAAAAAATCTCAAATGACAAAAGACAATG
ACAACAGACCCTCTACGGCAATGAATTTTAAAATAAGCTATAGATACTGG
GTCTGTGTACCGACAAGGTTTTTGCCAGTAGTGGCTAATTTCCAACAATT
TTTCTCTAGCTTAAATTTCTTGAATTTACTACTACTAATGTGCAAAAAAC
CGGGGTGTTTTCGCAAAAGAAACCCCCCGTCAAAAGATTATGTTTCCAAG
TCTCACGTTGTAAATATCTTCTTTGTTGTTCTATTCCATGGGCTTTTCCA
GAAAAGTTTTGTACATGGGGGGTAGAGGATATATTGGATATTTTGTCCGG
GGTGGGGGGGTTAGTGGAAAATCTGCAAAATTTGCCTTGTTTTTGTTGTT
TGCTCTGTTTAGGGGTAATTTTGAATGTCCGGGGGTCAGCTAATGATTGT
CCGGGGGTAAGCTCTGTTGTCCGGGGGGTCATAATTAACTATGTTTGGGG
GTAATTTTGAATGTCCGGGGGTCAGCTAATGATTGTCCGGGGGTAAGCTC
TGTTGTCCGGGGGGTCATAATTAACTATGTTTGGGGGTAATGGACATTAT
ATCCTCCCCCCCCCCCCCCATATTAAAATTTTTTCTTGAAAAGCCCCATT
TCGTTTAAGTTTACACAACCAACAATTTCCTGCCTTCCTTTCTAATGTCT
GCTCTTCGAAGAGAACTTTTGAAGAAAATACAGGTGTAGTCTCCATAACT
CGAAAACGCACGAGGAACACAAATTTGTTCGAGTTAAGGAAATTTCGAAA
TATGGAGTATGGTTTATAAGGCTCTGCTAATGGGACTAGAGAACTTATTC
GAGTTATAGAGTTCCATTATAGCAATAAGTTTTAATATACTCTCAGGTTC
CGAATAAACGGAACCCCCCCCCCCCCCCTTGTTAATTTTTCGATTTTTTT
CCAACCCCCCGGGCCTTTTTAGGGCCCCCCCCCCCCCCCCCCCTTTTTAA
TTTTTCGATTTTTTTCCAACCCCCCGGACCTTATTAGGCCCCCCCCCCCC
GTTTATTAATTTTTGAAAAATTCCCAGCTACCAAAAAGAAAATTCCTTGT
TTTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACCCTTTTTAACGTTT
TTAAAGGTTCATTTTTCAACACCCCCGGAAATTAGCCCCCCACCCCTGTT
TATTCGGCACTTGGGAGTACTATGTCAAAAGCAGAACTTGTATTTCTTTT
TCTTTTTTTCAGACTTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAAT
CCAAGAAATCGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTG
GCAACGAAAAGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTA
CTATTCCTCCCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCA
TCTTTCAAGGACGCAGAAAAAAAGTTTGGTACATGCTATGTCTTGCACTG
TCTCTGAATTTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAA
TATAACCATAAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAA
TAGGAACACTATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTG
ACGTTTAGTTCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCA
ATTAGATTTAGAACAATAGACCTTATTGGAGTTTTTTTTTCTTAAAAAGT
GATGTACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTGA
GTAGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTAAGCTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001643XLOC_001643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002998-exon-sc0000024-1575043694:318978..318993TCONS_00002998-exon-sc0000024-1575043694:318978..318993Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1575043694:318279..318410TCONS_00002998-exon-sc0000024-1575043694:318279..318410Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1575043694:310877..311078TCONS_00002998-exon-sc0000024-1575043694:310877..311078Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1575043694:309042..309244TCONS_00002998-exon-sc0000024-1575043694:309042..309244Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1575043694:306496..307081TCONS_00002998-exon-sc0000024-1575043694:306496..307081Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1510915933:318978..318993TCONS_00002998-exon-sc0000024-1510915933:318978..318993Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1510915933:318279..318410TCONS_00002998-exon-sc0000024-1510915933:318279..318410Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1510915933:310877..311078TCONS_00002998-exon-sc0000024-1510915933:310877..311078Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1510915933:309042..309244TCONS_00002998-exon-sc0000024-1510915933:309042..309244Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1510915933:306496..307081TCONS_00002998-exon-sc0000024-1510915933:306496..307081Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1491911889:318978..318993TCONS_00002998-exon-sc0000024-1491911889:318978..318993Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1491911889:318279..318410TCONS_00002998-exon-sc0000024-1491911889:318279..318410Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1491911889:310877..311078TCONS_00002998-exon-sc0000024-1491911889:310877..311078Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1491911889:309042..309244TCONS_00002998-exon-sc0000024-1491911889:309042..309244Clytia hemisphaericaexon
TCONS_00002998-exon-sc0000024-1491911889:306496..307081TCONS_00002998-exon-sc0000024-1491911889:306496..307081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:306496..318993 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0698617	0	6.2677e-10	0.0472851	0.453805	0	0.300506	0.957539	0.00931448	0.311578	0.0225686	0.454844	0.906289	1.19498e-05	0.279595	0.204052	0.75687	0.596787	1.43201	0.194052	0.96929	0.102903	0.490115	0.232342	0	0	0.864583	1.0956	0.42725	0.464789
Blast
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BLAST of TCONS_00002998 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 8.494e-35
Identity = 76/212 (35.85%), Postives = 122/212 (57.55%), Query Frame = 2 
Query:    2 GLDSQFAFIEVVLSSLTDEYPRYLRRYKELATLVMCAIAFLLGIPTVLQAGAYIVEIFNT-QXXXXXXXXXXXXXXXXIGWIYGADRLLDNVETMIGYKPSRWWLLCWKYFAPIIILVTFLYGIADWGGIKFGKEYVYPGWAEGVGWLLAFSSMVTIPIGMAHTLYKAHKTXXXXXXXXXXXFRETLRIAFSPNEERIQEIEQARMEKANTA 634
            G+DSQF  +E  +++L DEYPR LR  +EL    +C I++L+G+  + Q G Y+ ++F+   A G+SLLFL FFE ++I W YG +R  DN++ M+G +P  WW LCW +F PII+   F++       +  G  YV+P W +GVGWL+A SSMV IP  MA+       +            ++ +++   P+E+ ++        +A ++
Sbjct:  393 GIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMG-NYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGS-----------LKQRIQVMVQPSEDIVRPENGPEQPQAGSS 592
The following BLAST results are available for this feature:
BLAST of TCONS_00002998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A18.494e-3535.85Sodium- and chloride-dependent GABA transporter 1 ... [more]
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