TCONS_00002996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002996
Unique NameTCONS_00002996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002996 ID=TCONS_00002996|Name=TCONS_00002996|organism=Clytia hemisphaerica|type=transcript|length=1139bp
GGGTTTAGACAGTCAGTTTGCGTTCATTGAGGTGGTATTATCCTCACTCA
CTGATGAATATCCGAGGTATTTGCGAAGATATAAAGAACTTGCTACACTG
GTCATGTGTGCTATCGCGTTCCTTCTTGGTATACCTACAGTGTTACAGGC
TGGAGCATACATTGTGGAGATTTTCAACACACAGGCTGGAGGTTTATCTC
TTCTCTTCCTGGCTTTCTTTGAATCACTGGCCATTGGTTGGATTTACGGA
GCTGATCGTTTACTAGACAATGTGGAAACCATGATCGGTTATAAACCAAG
CCGTTGGTGGTTGTTatgttggaaatattttgcacCAATCATCATCTTAG
TGACCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAA
GAATATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTT
CAGTTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAG
CACATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGA
GAGactTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAATCCAAGAAAT
CGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTGGCAACGAAA
AGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTACTATTCCTC
CCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCATCTTTCAAG
GacgcagaaaaaaagtttggtaCATGCTATGTCTTGCACTGTCTCTGAAT
TTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAATATAACCAT
AAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAATAGGAACAC
TATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTGACGTTTAGT
TCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCAATTAGATTT
AGAACAATAGAccttattggagtttttttttcttaaaaagtgatgtacag
ggtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaagt
tttatgtgcgtgttcacaaaattgtattttaagctctcc
Run BLAST on NCBI

transcript from alignment at sc0000024:306496..318791-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002996 ID=TCONS_00002996|Name=TCONS_00002996|organism=Clytia hemisphaerica|type=transcript|length=12296bp|location=Sequence derived from alignment at sc0000024:306496..318791- (Clytia hemisphaerica)
GGGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTTTGACTCTTGGGCAAG ATCATCATGTACAGAAGGGTTTTGATTTCCCTTTTACTAATCTGAATTTA TTTACCTCACAGCCCAATCATAGTTTCCACGCTATCGGTCAAAAGAAAAA TGAAGCAATTCCATTGGTGCGATCTGACGTAACGGTTGAAAAAAATTGAA ATGTAGTCAACCTTTTTTTTCGAGCGCACGCTACATTTTTATGACGTAAT CTTTTTTTCCAAGCAAAAAGGGTTGAAGCGAGAAGGTGTGATCGCAGCGT GCGCAAGTGTAGATCGGCCTTAAGAATTGAAGTCGTTTCTCATATGTTAA AAGTCTTACATTAGGTTTTGTTTAACCTTAGTTTGCGTTCATTGAGGTGG TATTATCCTCACTCACTGATGAATATCCGAGGTATTTGCGAAGATATAAA GAACTTGCTACACTGGTCATGTGTGCTATCGCGTTCCTTCTTGGTATACC TACAGTGTTACAGGTATTTACTTAACTTTTTTACAACTTTTCTATCTGTT CTCAAATACAACTAACCTAAAATCTGACAATGTGTCTGTCTGGCATCTAT GTCTTTATAATCGTTTATCATCTAATTTAAGAAATAGTTGAACTCGCGCA ACGCACTTGGCTTAACTACAGTAGCTTCAAATTATTCATAGACCCGATTG TAGGCCTCGAAGATCAATACTTTTGAAAAGTGAAAAATAAAACAACCCAT GATATTCACCAAATTCGACCATTTCCAGACCATAGATTTATAAAACCCGA AGGGCTAAATTTCGTGCGTTAAGCCATCGCAGGCAAAAAAAAAGTGAATT TCGGGAAAAATATTGTTGCTACTGTTTTTAAAAACCCGGAAGCTTCTGAA TAGTCAAGTGCTGAAATTCTATTGTAATGTCACGTGCTAACCACGGCACA CTTTTCAGGAAAAAGTACGTCATATGATATTCGTGATGTAATATTTTATT TGATTGACACTTTTTAATTCGATCTTCACGGGACAATTTTCTCCGCAATA AAGCAAAATTCGAATGAGTTTTTTAAACGGTTTGCCAGTTCAAGGGACCA AGGATATAGCTTGAATTTAATAAAAATTCGAATTATAGAAAGTTGAATTA CCGAGAGTTGATTGTATATCTAGAAAAGTCGTTTTCCGCAGTGGAGGTAA CCTGAAAGGCTCCTTTTTCAATAGTTATTTACCATCACATTTAGCTTTAT TTTCTGAAAAATATCAGAAATTTAAGTGATATGTGTTTACTTTGAGTTTA TGAAATTATCTTTGAAATGTATTTTAATTATTCAACTGTGCTATTTAATG AAATCTAGTTCAAAATCGAACTTTTAATAAACTTAAAAAAAAGCTCTAGC ATCTAGGTCGAGATCTCTATTGTCGGCGAATGCTGACATTGGCAAAAAAA TCGAAAATGCTCTTGTCGGTACGCAAAGTGTTAATTTGCCTGGAAGGGTT CAAATAATGACATCAGTCTTTTTTATTTATTATCCAAATATGCTAATGAG CTGAATACGAAATAAAAAAACATTCGATTTTGGAGAAAACCTTAACCATA GTCATACTAGGCTTCTAGAAGCGGATCCTTGTCATATAAGGTAACTTTTG ACAATAACAAACAGTTTTTGATGACGACACGTGACAAATGAGAGGAAATT GAAAATTTCCTTTGTTCTTATCAAAAGCTATTGTAAACGAACAAAGGCTT TAGAAAAAAGTTCCCTGTACTTAAAATGCCTATTTCATCCTAAATATTCA ATGAATAATTCGGAAAAACAAGGGCTATGTTTTAAGCTATTTGGGTGGTA TTGCGAAATATCATAATTCCATTAGCTTCTCTGTTAGCTTATAATTCTGA AAGTTGAAAAAAAATTTGAGTCTCTTTTAAGTCGAACCTCTACAAGTTTG CTCTGATCTTTTAAACCTAACTCCATAACTTAAATTTTCTTAACTCCATA ACCCGTTTATGTATTTGTATACAAAAAATTTTTTTCTAAAAACTTGATCA CTTTTTGGTATTTCTTTACGACGAAGCTATTGAGAAACGTCGGGATTTCA GAGATTAAGGCAGAGAGAAAAGAGAAGAGAAGCGGGCCCTATCCAGGGAT AGTTTCCTACCCCTAGATGGGGAAATCACAGCGCTACCAGACATTGGACT TTGTAATCGCGACACATCAGAGCCGTGCTGTATTGATGATGATACTCGCA CAGTACGGGAGAACGTTGCATTCTCGCAGGTACTGACCATATCATACTGA GTATCATCACCACACCACATTCAATGTCCGGCATATCTACCCATAGTCTT GTATCAGAGTGATGGTACCCTATTCGCCTCACATGACATGGGTTGACCCG TGCCAAGATACATTCACTAGCCAAGTGGATCGTAGCACCGAGTGGGGATC GGACCCTGACCTCCAGCACAAAATTCAAGAACGATGACCACTACACTACC ACGCCGAAATTAAGGCAGGAAACAATAAAATATCAACAAACAAGATAAGC AAGCTTTCATTGTATTGCATTTCCTTAAGTATTGTAAATAATACTTAATT AATCCATAATTTAGCAAAATACTAAAAATATTTGGTAAAAATCATTCCTG GTTAAAAATAATAATATAATTAGCAAGATACACGCTTTTTTTTATAAGAA TATCTTCCATAAGAATATCAGGGTGAAAATTTGCCAAATCGTAAGAATAC CCTAAGAATACCCTTTAGGGTGAATTTTACAGAACTTAATAAGCATACAG TCATTTTGTATTTGGTTAACAGAAAAAACTGCCTCCTTTGTTAGATATAA ATTGAAGCTTAAAGAGTTTGCATATGAGATGAATTAAACAAATGACAGCT TTTTAACAAATTACTTTTTCCACAAAGTAATAAGAATTGAGGAATTGATC GAATTGTCGGTATCGCTGACATCCTCAGAGCCACGTACATAAGCCGAAGA ATTGCTTTCAGAATCTGGCCTAGCCCGGTAGCCATTTATGGCTTTTTGAT AGACTTGGTGGCGCTGATAAGTGGCCCGGTGTAATTTGGCTGACTCGATT TTTTGGCTTTGCTTGAGGTGGTAGCAAATCCAGACCGACAAGACCCAGTC CCTTTTTGGAGAAAAACAAACAGAAAACAATGACCAATAGATCAATTCTT TTTAAATTTTAGAGATATGTTTTTGTTTTATTATAGTTTCATAAACTCTG ATGAGGCTTTATATTTCATTATTTTGGTGTTTTTATATGATTTTTGAAAA CGAAAGTAAAAAAATTTAAGAAGGCAAAATCCTCTAGTCTACTTCGCTGG ACTCAGCGCCATTAAAATCATCAAAAAGTTCAGTCAGAAGTAGAATCTAG TATAATTCTGACAAGTCTTTTTATCTGAAGAATCAAATTTCAGAAAACAC TAAAACTTTTCCTATATACAAATATTTGTCTTTGTAAAATATGTATATAA AAAAAAATTTTTTATCTTATATTCTTCATTATATAATTAGTTTATTCTCT ACGGTTGGTATTAATTAGTATTTTATTATTACTATGGCAGACCAACAATA AATAAATTGGAAAATAAAAAAAAATAAAAATATATCATATGACAACTATC AAATGACCAATGAATTTTAACACCCAAAATCCTAAAAGACAAAAGACAAA ACAAACCAAATTTCACTAGAGACACATTACTAGAGCAATTAAAATAAATT TAGCGAATAGAAAACCAATATTTAAAATGAAAAGAGATCTAAACCGAAAG AAAATGGGAAAAGTATGAAAAGATGAAGACCGAAGTCTGAGATCAGGTGC TGTACCTAGAGTAAGCATCCACTTTCAATTCCCCCCTTCACTGCAATAAG GTTAGTTGTACACCTCAGCATGTTATAACAATCGTGGAAGCTTGAGTCTA AGTTCATCCCGTGAAAGATTGGGCCGAGGTCTTTCTCTTGAAAAAAGATA ACTGTGGACCAATCGAAACCAAAAGCAGCATGTGTTTCAACAATCAAATT GTTCCCTTCCTGAAGAAACTTGTACGGATTTTCTCCTTCTTTAAAATCAT TTTTCTCTCCGTGAAACTCTTTGTAGCTCTCCTTTAACTGATTCAGAATA GTACAATAGTTTGGTAGGTTATCGTCTAAGTCAACAATTATGAGTATTCC TTCGTTTGTTCGTTTCCTCGCTTCTTTCACTGCTTCTTCAAACGTTTCGA CAAACATTGGTTCGCAACCACCTGGAAAATTGTCTAGTGGCATGACGATA CCTTCTTTGTATTTATATGCTCTCTTATCGGCTACTGATTTTGTTGCCTT GACAATCTGTTGAGTATTCCTAAAATTCTGTTTGAGATTGACCAAAGAAA AGCGTGTCGAAAAATAATCGTAACTTGAACTATGACTTGGAATATTTGTT GTTGGCACAATCCATAAGAAGTCAACGAGTGATATCAGCTTTTCCCATTT CAAGTTATCCATACTGAACATTTTACATTCATCGATGAACAATGCTTTGA TGTCACGTGATTTGATCGTCTCGGCTAAGTCTGTGAATTCCTATTTAAAT AAAATTTGTAAACATGGTTATAATTTTTGATTTCGAAACTTAACGAAATG ATTTCCTTTTGATATTAACCCCCGCATACCCAAATGGCGTGTATATACGT TGAAAATTAGTTAATATACCGAGTCCCCTCGCTATAACTCCTGACTTCTC GATTTAAAAGGGCATAAACAACAACTATTGTCTAACTCTCAAGTTACAAG CTTTTATGGCAGTTTGTAATTTTTGATTTAAAAAAAATGCTATGCGCTGA AAAGGTTAAAGGTTTTTTAAGTTGGCTGACGGTAAATTATGAAAAAAAAG AAAAAAATCAAAAAATCCCAAAGATTTGCTTGAAGAAACCCGATTTGATT TTAATGGTAGTCTTTTTTCAGATTTTTTGCTCAAAGTTGTAAATACCGAG TGTTTCAAAAAAAATTATAGAGATATTGTAATTTCTTGAATTTGACCGAA AGAAATTACATACTACATGGAAACATTCTAATGAGTTGACGCCAATTTTT ATTACTTAATATTGATATGGAGAAAAGGTTTATTGGTTGATCAAAGAATT CCTTAAAACTTACCCACTCATCCTGGAAACGTTCAACAAATATACCATGA CCCTCCTCAAGATCGATTTTCAGACGGTAATATAACATTGACTTTAGTCT TTGAACTCTCAAATCCAAAAAAGCCATCATAACTTTTCCATTGTACTCAA GTCGTTTGTTTAATTGTATTGCTTTTTGCGTAAGCAAGATTGACTTTCCA CCACCAAAAGGCCCAACAATGATCACTCTCCTGTATCGCGGGTCATCGTT GTTCATTATTGCCATCTGTTGGTTGGAGTAGAATAAAATGTTGTGGCTAG TTGAAACATTTTCGATTGCATTGCTTGTGTATTCGACCCATGTTGAGCTT GTGATGGGTGCGACTTGATCTTTTTTCGATACGTGAATTGCAAAAACCAG GATTTTAAGAAGGTTCTTTGCTTCATCCAAAGGATCCGGTGTGGACGTTG CAGCAACAGCTGGGAATCTGTTGAAAATACTAGTTAACCATGGTTGAATG TTGGTTTCCATAGTGATGTAGTGTAGAGTGTTGACTGAAAGTGCATCATT TTCGACACAGATCACCGGGAAATATGTCCAGCCTGGTTTGAGTTGATCTC CTAGTCTCTCCTCGAAGATCTGATGACTTTTTTCCAATTGCTTGAAGACT TTATCATCTGCAATTGTTCGTTTCAGCTCAATCGAGATGATAAGTTTCCT TTCCCAAGATATGATCAGAAAGTCCGTCTCTTTATGCATTTTATATTGCA CGTTTGTCAGAAAGATGAGCGAAGAAAGAACAGCTGTATTTTGGAGAATG TCATCTTTTAATGGTAGAAGCTGATCATAAAAGAAATGTTCAAGCTTTTC GCCAACTTCTGACAGTTCCAATGTGAATAACCATCGAAGGTTTGAATCGT TGCTCGGTGTATCGTCAATCATTTGCTTGATCATCTTTCTGAGGTTTTTC GCCCATAGATTTTGTTGGAGAAGTGTTCCAAGAGGTGATGTGGGCGAGAT CACTGCAAGACATCCTTGAACGAAAACTCCTATATCGAAAGTGGTTTGTG GCAGGGTCACTTGGTCAGTTTTAAGCTCTGCAATAACCAGATACATGATT TGAAGGTTAACAATAAATTTATCAAACGCCTTCTTGTCGATAGTATTAGC ATTGTTTTGCGTTTGCATAAAAGCTTCCAATTCTTTGGTCAGCCAATACG TCGGTGAATGTTGTTTCAAATTAACCAAAAGTCTATCGATGTCTTTTTTG ACGTCATAATTAAGGATAGCGGTAGAGGACTTTTTGTACTGACTCGAAAC AAACGTGGGTGGTATGAAAACACTTTTGCGTTCACTTTGAATGAAAAGAG AACTGTCTCCATACTCCCTTTCGAGAATGAAGTCGGCTGCATCGATAGGA TTCGCTGTGCAATGTGTATTGCCAAGATTAAACTGTTTTGCTTGTCTTTC TGACGTTGATTGTCTGTTATTGAGAATCTGCTGATACAACGATTTGTTGA GAGTACATCTGGTTGGATCGATTGTTAACGGTTTCAATGACAAAACTTTC TGCTTAATAGAAGCCAAATTTTGTGTCTGAGCAGCCATCTTTATTACAAC AACTTGAAAATGCGTTCAAAACATTCAAACTCTTGTACTCATAAACGATA TGTAGATAATAAAAGATTGTTGTTTTTTTTGCTTCTCAGAGCAATATTTC GAGGAAAACAATCATTTAAATAATGCATAGAATGCATCTTTTTTTTATTA GAGCAACTCTATCATATAAGAACAAATATGGTAGACTTTGTTAGCCAAAA CGTGTTTTCGATCAGAACGTTTATCAATCATAAGCATAGAAAAACCCTAG ACTTCAAAACCAAAACTTTAAGAATGAGTCTAGGGAACCATTTCAAGACT TTACGGGAAATTACGCCAACACACAAACATTTTACGCACATGTTTAAACT TTAAAACCTAAAGAGTCAAGAAAATCCGTACGCTTCGAAAATTGTGACGT TCTTATGTAACACGTGTATCTGAATGTTTGTTTTAGACTTCCCCAGTTTG CATTGACAAGCTTCTGAAACTTGAGTGTACGTTTTAGATTTCCCTCTAAC CTTATCATTGATTTAGTAATTTACACGTTTTTTTATAAGAACATCCAAAA TTTTTGAAGCCTTTGAATGTTCTTAACTTTTTAAGTTTTAAGCCTAAAAA TATTCTTACCATGCTCTTTTTTTCGTCATTTTTGTCCATTTTCATATGAA GTTCGGTGTATTAGAGTCTGCAAAGCCTTAAAAATGTTTTTAACTTGTTC TTAACATTTTGTTCTTATAAAAAGAAACGTGTAGCATGCTACCATGTATC AGTCATTGCAACATTATATAACAAATAACTACTATGACCACCGAAATAAC TATATAATAATAACTTTATTATTATGTTATGACTGACCCGTATTATAGAA ACTTTTAGTAAGCGATATAGGTAATTTTGAATTTTTCCCGAAAAAAAACG TCATTTTTCTCATACATCTTTAACCGTTTATATTTTCAATTTTTTATTTG ATTTTATCACTAGGCTGGAGCATACATTGTGGAGATTTTCAACACACAGG CTGGAGGTTTATCTCTTCTCTTCCTGGCTTTCTTTGAATCACTGGCCATT GGTTGGATTTACGGAGCTGATCGTTTACTAGACAATGTGGAAACCATGAT CGGTTATAAACCAAGCCGTTGGTGGTTGTTATGTTGGAAATATTTTGCAC CAATCATCATCTTAGGTATGCGTGACCCTTAGACCACGAGGGACGCGTAT ATGCGTCCAAAACAAGCCAAAATACTGAGTCTCACACTTGAGGCCATAGC TACTGACCACTTGATTTAAAGGGGCATAAACCGAATGCTTTTAGAAAGAC TATACAATTAGCTTTCTAATGTTACCAAAACCATCTTCTAAATCAAAAGC TACCAGATTTTATGGCACTTTAAAGTTTTGAGTTTCAAAAAAAAATCAGA AAAATTTCAACTTTTTCAAAAAAACAGCGCGCACTAAATGTTAATATGCA CCATTGCAATGTCTTCCACGGATCCAACAGCTGATTGGTTGAAAGTGACG TATTGACAGCTACTGATTCCGTGATATAATGTCAGAAGACAATGCAATTG ATTTCTATTTGATTGAGATACTCAACTTTGAAATGAAGATCTCAAAGCAC TAACTGTAGATTCGATATTTGTTGTCCATAGCCTAGTCTNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC TAGCCCCTGTATCTATAAGGCTGGAACACCGGATTCTTCCAGTCGTTTAT ACAAACTAAATCCCGTTTTATTATTATTAGTATTACACGCATTATAAAAG ACTCCAGTCTATCCATAGCCTAGTTATTCAATTGTTTTCACGGCGTCCAC GGCCAGCCGGCATGGCTATCTATCAAATGAATGGAACATCGGAAGGAGCA GGGATTCAAACCGTGAACCCTGGTTTTAGGAACCGCGAACCCCCGGTTTT AGGAACCGCTAATCCCCGGTTTTAGGCACTGGCGCCGTGACCACAGGGTC ATTGTTCCATAAGACTGACTAGTATACTCATTTCTTGCGCATCTGCAATT TTACATTAGATTTCTTTTGTGCATGAGTACACATATTTTATTCATAGTGA CCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAAGAA TATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTTCAG TTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAGCAC ATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGAGAG GTAAGTTTTCCCCGATTTCTCATTTTCTAATCCCAATCGGAATAAATCAC ATTTTGTTGTGTGAAGCACATAGAACATCAAGTTATTCCGTTTCAGACTA CAGCTTTTAAGAAGTTGAGTAGGTCTATTTCATACACGTTTTAGATAATT TTAAGAACATTGAAACAGGCGAAGAACATTTTTAAGCTTAAAACTATAAA AGTTAAGAACATCTGAAGGCTTCAAAATATTTGGTTGTTCTTATAAAAAA ACGCATTTATGAAGTGGATTTATTTCTTATTTTATAATCAGAAATTTGAT GCCTTTTGACAAATATTTTGAAAACGATGTGCGTTGCTAACATATGAGGA CCGCAAAAGAGAAAAGAGAGATTGAACCATAATGATATTTTAGATGTAAG ACGTATATAAACTTTTGAGTGAACTGAGAAAGTGCTAGATAAACAACAAC ATAAGACACGTGTATGGCGTAAAACTCTCTGACCGAATTGGTTGGCAAAA TTCATGATATTCATTACGTAATGTTTTCTACGGAGACACCCTGGTTTTTG CTACTCTGTACCAGAGTGTATCTCACGTTTATCGCTTTGTAGTACACTCA GTGTGCATTGTCTGTTTGATAAAAAAATTCCCGTACGGAGACCTCTGTGA TGAAGTATGATTTATAAATAGCAGCACTTGTCTTCCCCTCTCACAAACAC TCCATGGCAGCGGTCGGTTTAAAAAATCTCAAATGACAAAAGACAATGAC AACAGACCCTCTACGGCAATGAATTTTAAAATAAGCTATAGATACTGGGT CTGTGTACCGACAAGGTTTTTGCCAGTAGTGGCTAATTTCCAACAATTTT TCTCTAGCTTAAATTTCTTGAATTTACTACTACTAATGTGCAAAAAACCG GGGTGTTTTCGCAAAAGAAACCCCCCGTCAAAAGATTATGTTTCCAAGTC TCACGTTGTAAATATCTTCTTTGTTGTTCTATTCCATGGGCTTTTCCAGA AAAGTTTTGTACATGGGGGGTAGAGGATATATTGGATATTTTGTCCGGGG TGGGGGGGTTAGTGGAAAATCTGCAAAATTTGCCTTGTTTTTGTTGTTTG CTCTGTTTAGGGGTAATTTTGAATGTCCGGGGGTCAGCTAATGATTGTCC GGGGGTAAGCTCTGTTGTCCGGGGGGTCATAATTAACTATGTTTGGGGGT AATTTTGAATGTCCGGGGGTCAGCTAATGATTGTCCGGGGGTAAGCTCTG TTGTCCGGGGGGTCATAATTAACTATGTTTGGGGGTAATGGACATTATAT CCTCCCCCCCCCCCCCCATATTAAAATTTTTTCTTGAAAAGCCCCATTTC GTTTAAGTTTACACAACCAACAATTTCCTGCCTTCCTTTCTAATGTCTGC TCTTCGAAGAGAACTTTTGAAGAAAATACAGGTGTAGTCTCCATAACTCG AAAACGCACGAGGAACACAAATTTGTTCGAGTTAAGGAAATTTCGAAATA TGGAGTATGGTTTATAAGGCTCTGCTAATGGGACTAGAGAACTTATTCGA GTTATAGAGTTCCATTATAGCAATAAGTTTTAATATACTCTCAGGTTCCG AATAAACGGAACCCCCCCCCCCCCCCTTGTTAATTTTTCGATTTTTTTCC AACCCCCCGGGCCTTTTTAGGGCCCCCCCCCCCCCCCCCCCTTTTTAATT TTTCGATTTTTTTCCAACCCCCCGGACCTTATTAGGCCCCCCCCCCCCGT TTATTAATTTTTGAAAAATTCCCAGCTACCAAAAAGAAAATTCCTTGTTT TACTCTAAAAAGCCTAAATTTAGTCTATTTTGACCCTTTTTAACGTTTTT AAAGGTTCATTTTTCAACACCCCCGGAAATTAGCCCCCCACCCCTGTTTA TTCGGCACTTGGGAGTACTATGTCAAAAGCAGAACTTGTATTTCTTTTTC TTTTTTTCAGACTTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAATCC AAGAAATCGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTGGC AACGAAAAGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTACT ATTCCTCCCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCATC TTTCAAGGACGCAGAAAAAAAGTTTGGTACATGCTATGTCTTGCACTGTC TCTGAATTTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAATA TAACCATAAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAATA GGAACACTATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTGAC GTTTAGTTCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCAAT TAGATTTAGAACAATAGACCTTATTGGAGTTTTTTTTTCTTAAAAAGTGA TGTACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTGAGT AGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTAAGCTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001643XLOC_001643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002996-exon-sc0000024-1575043694:318776..318791TCONS_00002996-exon-sc0000024-1575043694:318776..318791Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1575043694:318279..318410TCONS_00002996-exon-sc0000024-1575043694:318279..318410Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1575043694:310877..311078TCONS_00002996-exon-sc0000024-1575043694:310877..311078Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1575043694:309042..309244TCONS_00002996-exon-sc0000024-1575043694:309042..309244Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1575043694:306496..307081TCONS_00002996-exon-sc0000024-1575043694:306496..307081Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1510915933:318776..318791TCONS_00002996-exon-sc0000024-1510915933:318776..318791Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1510915933:318279..318410TCONS_00002996-exon-sc0000024-1510915933:318279..318410Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1510915933:310877..311078TCONS_00002996-exon-sc0000024-1510915933:310877..311078Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1510915933:309042..309244TCONS_00002996-exon-sc0000024-1510915933:309042..309244Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1510915933:306496..307081TCONS_00002996-exon-sc0000024-1510915933:306496..307081Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1491911889:318776..318791TCONS_00002996-exon-sc0000024-1491911889:318776..318791Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1491911889:318279..318410TCONS_00002996-exon-sc0000024-1491911889:318279..318410Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1491911889:310877..311078TCONS_00002996-exon-sc0000024-1491911889:310877..311078Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1491911889:309042..309244TCONS_00002996-exon-sc0000024-1491911889:309042..309244Clytia hemisphaericaexon
TCONS_00002996-exon-sc0000024-1491911889:306496..307081TCONS_00002996-exon-sc0000024-1491911889:306496..307081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:306496..318791 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0698617 0 6.2677e-10 0.0472851 0.453805 0 0.300506 0.957539 0.00931448 0.311578 0.0225686 0.454844 0.906289 1.19498e-05 0.279595 0.204052 0.75687 0.596787 1.43201 0.194052 0.96929 0.102903 0.490115 0.232342 0 0 0.864583 1.0956 0.42725 0.464789
Blast
BLAST of TCONS_00002996 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 8.494e-35
Identity = 76/212 (35.85%), Postives = 122/212 (57.55%), Query Frame = 2
Query:    2 GLDSQFAFIEVVLSSLTDEYPRYLRRYKELATLVMCAIAFLLGIPTVLQAGAYIVEIFNT-QXXXXXXXXXXXXXXXXIGWIYGADRLLDNVETMIGYKPSRWWLLCWKYFAPIIILVTFLYGIADWGGIKFGKEYVYPGWAEGVGWLLAFSSMVTIPIGMAHTLYKAHKTXXXXXXXXXXXFRETLRIAFSPNEERIQEIEQARMEKANTA 634
            G+DSQF  +E  +++L DEYPR LR  +EL    +C I++L+G+  + Q G Y+ ++F+   A G+SLLFL FFE ++I W YG +R  DN++ M+G +P  WW LCW +F PII+   F++       +  G  YV+P W +GVGWL+A SSMV IP  MA+       +            ++ +++   P+E+ ++        +A ++
Sbjct:  393 GIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMG-NYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGS-----------LKQRIQVMVQPSEDIVRPENGPEQPQAGSS 592          
The following BLAST results are available for this feature:
BLAST of TCONS_00002996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A18.494e-3535.85Sodium- and chloride-dependent GABA transporter 1 ... [more]
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