|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002990 ID=TCONS_00002990|Name=TCONS_00002990|organism=Clytia hemisphaerica|type=transcript|length=9651bp protein sequence of seven transmembrane protocadherin flamingo >TCONS_00002990-protein ID=TCONS_00002990-protein|Name=seven transmembrane protocadherin flamingo|organism=Clytia hemisphaerica|type=polypeptide|length=2923bp MKLRWLEEELFKLQRYFMILFLFSTVKDVITTDTQFHNPVQDLDKKCKLLRun BLAST on NCBI transcript from alignment at sc0000024:177010..223923- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002990 ID=TCONS_00002990|Name=TCONS_00002990|organism=Clytia hemisphaerica|type=transcript|length=46914bp|location=Sequence derived from alignment at sc0000024:177010..223923- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:177010..223923- >TCONS_00002990 ID=TCONS_00002990|Name=TCONS_00002990|organism=Clytia hemisphaerica|type=CDS|length=342108bp|location=Sequence derived from alignment at sc0000024:177010..223923- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002990 vs. Swiss-Prot (Human)
Match: CELR2 (Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1) HSP 1 Score: 1070.07 bits (2766), Expect = 0.000e+0 Identity = 776/2537 (30.59%), Postives = 1220/2537 (48.09%), Query Frame = 3
Query: 876 RRRRNI--PIYFEKSLYSVDIFEDTKRDSVIRKLKV------NGGSGKYSFSKTEDPKTDILFKVKSDTGDVILLQELNREDGAERFSIDIRAIDLNDPSNSATTTIRVKVLDVNDNAPTFAESSYSITVDEGQVANKYILTVRATDADEGSNQEIRYSIVNKANVQVP--FQIDPISGAIKSTDVLDRETHPYYNFTVRAEDQGK--VKLHTDVSVSITLRDKNDNSPKFSKDVYKLSIPENTTVGSVVFKLDAVDDDIGQNGVIEFRPLDSNLR--FRINTSTGEIILKEAVDFDKYQRFSRFTVVAFDKGSPPKYANTEVEITIE--DVNDNAPRFAKRIFERTSDIMEDIKVGSFVYKLSARDRDSGPNGDITFKLEDGLPQDFPFELDPKSGEITVSKGLDYETTKSYKFGVIAVDNGHPPKKDTTQVVFNIGNVNDNNPKFKQSSYYKEILEDTRRGEAIEKVEAFDPDQLSNEDFEYAIEEGNSDDCFGI--DPFQGVLFLKCDLDYKRKNMYNLKLRVTDADKKPGYAYFKIEVTDANNNSPRFGQDVYQWNVLENADIGTVIKSVLATDADTGENARITYSLQPGSPIDTFGIVNDTGAITTKKKLDRETTKSYTLVVKASDHGKPFKKFGFAXXXXXXXXXXXXKPVFTKNLYTFTIEEDAKIGAVVGHLQATDNDEGRNKEVRYQFKERKHEY--FSINAESGSIRTIKLLDRETIERFTFEVLAIDQGTPALQTSTSVIIDIEDVQDSNPVFTEKVYNFTIPENSLV--EVGRIRATLADDAFRHSMVYSFTK--YQTTFRIASLQGIIRANSPLDYEKQHHYQLHVRVVSDSGREDTAXXXXXXXXXXXXPPILEDFYIFLNALNGKYDPMF------RVPAEDPDVSSVLRYGIITGNEHDFISLNDETGELFLKKSIINT-AAEIRILFEVSDGKYADRAYGHILVSEVTDVMVKNSMFIVLNNATRNDFLKATVLRKFKDSLAQIFDVDGSKIVDASKIFILSIEAFRDPRKGNKNAEMLEIAIAVKSKMADTYMTADFLKDKFYLNATAFTR-SGFDLVSFDFWGEYFCGSESCKNLERCSIQWSNTNQISSTIKSKYVIFRGIYFKPALKCECPHRFHGMKCDKPFNMCFMERCNSNGKCISTDDGFSCKCDHGYTGDFCAFDRQTSSCPIQLNLAKNPCGLRGVCSAKSGGGFDCTCPAKGTDTEYCKLSTRYFPKGSYIAMPGLKKQQRNFDISFQFRTFQANAVLLYNGRYSNQNDFIAVEIVDGQVLFSVNFGKSKDNKEQVTTVQSFNAGGVNDGKWHTVKVQLKNKV---------------ISIAVGESCDIETASVLNSQGTHRYCAASTRVQGEMKTLDLTAPALIGGLPDMQRTFLSPVKDFIGCMRNIVFDHNSLDLSNYLHNFGXXXXXXXXXXXXXDAYCTKYVNGDCHETLDGPKCSCRSRFVGQRC-EKAAEPIRLNANSVLVVDDSQASGSGFSAWRYSMVVKTTQKDAVILEETINGVDG-RLMLKNGYLQYHHKSKLI----LVLDSFFMANGKWNQIQIKWTAN----RLYLSSLYDQHXXXXXXXXXXXXXXXXXF---------GGTGNNKLLACIKAF----TYNG-NDINLLHTSNKHVQKGCLESSLCDTLDCGTGT-CQITSGVAQCHCNGAGYKGPQCLDICKDSPC-NTGTCKHSSSSLSGYVCDCPIGFTGEHCEIAKQKKCPPKTFGKDYCGPCDCKLHENFNETCDPDGQMEPYSYPGKCFCNDDYYLKGG--VCVKCNCLLEGSESSVCDKKTGQCKCKANVIGMKCDKCPGAWQEI-TNGCGEIN-NSCPRTYVDGIWWRRAARGVTQRERCPFNAVGNATRHCDPRKGWQAPDFFDCTSQLFSNIQTLLKPVLTSGKRMTKDLVTSISYKLDFAVSAPKLTFTPHAFYGKDIMIGYDALRLMISYEGNQTAAHLVSADEEQFVGNLLKSAGKLFQTSLSPFWDSIQKKYSGTAGLMKEMERFVNILSKNLAYIKRNRNRRSVTLNTYSQATSNIYFEIKPMVRGN----------------SVDEEKFITLPDSLSSRHIDYYMWKDPSVSVRISDAIFLD--HDELFRINEVNIGLIIYKTLGHLLPTNFDQDNREEGRKYALNVYSDVVTLTIPSIKSLHPLT-EIQITYKNVSQLNSTSTSLVCAFWNYSLSGTVSGGWSPNGCVTKMEVNSSDVTCVCNRMASFALV----GFQYTEIIPRVYQPAFLVYIXXXXXXXXXXXXXXXXXXXSQLKSNANSIHKNLAFVLLLGWIVFTFAINRPDVGKANCRIIAILIHYCLTCAFSWLMVEALHMYRMILEPRDINYGQMMFYYFIGWGAPVIVVGVTAGLKPDGYGTPEFCWISAKVNDSVWTYVXXXXXXXXXXXXXXXXXXXSSCEKANIKG--KKAKLARIRYRLAISFFFLFIMMVTVFGGLLEVSFDMTLLTYIFAGTCALEGVYMFLFYVCFNRKVRREAYNAYKR 8180
RR+RN+ F+ Y + E+ + + L+ G +Y+ D +++ F + TG V +EL+RE + + A D P SA T+ + V D ND+ P F + Y ++ E +LTVRATD D N I Y ++ + F+IDP SG I++ +DRE Y TV A DQG+ T +V +++ D NDN+P+FS+ Y + + E+ T G+ V ++ A D D G N V+ + + N R F ++ TG + + +D++ + ++ V A D G PP +N +T++ D+NDNAP F F+ T ++E + +G V + A D D+G N + ++L G+ DFPF ++ +G I+V+ LD E Y FGV A D+G P + V + +VNDNNP F Q Y + ED G ++ V A D D ++ Y I GN+ + F I G++ L LDYK + Y L + +D ++ A + VTDAN + P F Y NV E+ GT + + ATD DTGENARITY ++ I F I DTGA+TT+ +LD E SYTL + A D+G P +K + I V DVNDN P F ++ Y ++ ED V + ATD D G N V Y F+ F + + SG +RT++ LDRE + ++ A+D+G P +T V + + DV D+ PVF + ++ + ENS + V R+ AT D+ ++Y + F++ G + A LDYE + Y L ++ S + A V+V + D ND+PP+L +F I N F RVPA DPD+S L Y GNE + LN TGEL L +++ N E + VSDG ++ A + V+ +TD M+ +S+ + L + + FL + +L F ++A +V + +++ D G+ L + ++ ++ L+++ YLN + T S ++ FD + C E C+N RC + + + I S V+FR I+ L+C CP F G C+ ++C+ C +G+C S + G++C C GYTG+ C ++ C C G C GGF C CP+ + YC+++TR FP S+I GL +Q+ +F ++ F T + + +LLYNGR++ ++DF+A+E++ QV + + G E TTV F GGV+DG+WHTV+++ NK +++ + CD A S + CAA G K+LDLT P L+GG+PD+ +F ++ F+GCMRN+ D +D+++++ N G+ CPA C+ C + G C D C C F G+ C ++ A P +S++ S W S++ +T Q D V+L+ G L L+ G++ + + L L+ +G W+ Q+ A+ LS Y Q L L +++ GG C++ T G N ++ H + +V++GC CD+ C + C C C+ GY G C ++C +PC + C S+ GY C+CP + G +CE + CP +G CGPC+C + + F+ C+ G+C C +++Y G C+ C+C GS S VCD + GQC CK VIG +CD+C + E+ TNGC E+N +SCPR GIWW R G+ CP + G A RHCD +GW P+ F+CTS FS ++ + + +R L + S +L + T ++G D+ + Y ++++E Q L + + F NLL+ L T+ W+ IQ+ GTA L++ E + + L++N+ R L+ ++ T NI + + +GN D E + LP+S+ P + + H EL + E +IIY+TL LLP N+D D R + + VV++++ + L P + +T + T +C FWN+S+ + +GGWS GC N S V+C CN M SFA++ + EI+P L Y+AL V + L+ F L L+SN + I +NL L L +VF IN+ D+ A C +IAIL+H+ C FSW ++EALH+YR + E RD+N G M FYY +GWG P + G+ GL P+GYG P+FCW+S + +W++ P+ ++ + + ILA +SC A +G KK ++ L SF L ++ T LL V+ D L Y+FA ++G ++FL YV +++VR+ A R
Sbjct: 170 RRKRNVNTAPQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDALFDSRSNQFFSLDPVTGAVTTAEELDRETKSTHV-FRVTAQDHGMPRRSALATLTILVTDTNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRLLEGSGGSPSEVFEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYT-LRVRAQDGGRPP-LSNVSGLVTVQVLDINDNAPIFVSTPFQAT--VLESVPLGYLVLHVQAIDADAGDNARLEYRLA-GVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRD--AHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTASDGTRQ-DTAQIVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDTGENARITYFME--DSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIP-QKSDTTYLEILVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGDGDFIVESTSGIVRTLRRLDRENVAQYVLRAYAVDKGMPPARTPMEVTVTVLDVNDNPPVFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGELTALVDLDYEDRPEYVLVIQATS-APLVSRATVHVRLLDRNDNPPVLGNFEILFNNYVTNRSSSFPGGAIGRVPAHDPDISDSLTYSFERGNELSLVLLNASTGELKLSRALDNNRPLEAIMSVLVSDGVHSVTAQCALRVTIITDEMLTHSITLRLEDMSPERFL-SPLLGLFIQAVAATLATPPDHVV------VFNVQRDTDAPGGHILNVSLSVGQPPGPGGGPPFLPSEDLQERLYLNRSLLTAISAQRVLPFD---DNICLREPCENYMRC-VSVLRFDSSAPFIASSSVLFRPIHPVGGLRCRCPPGFTGDYCETEVDLCYSRPCGPHGRCRSREGGYTCLCRDGYTGEHCEVSARSGRC------TPGVCKNGGTCVNLLVGGFKCDCPSGDFEKPYCQVTTRSFPAHSFITFRGL-RQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQEQVQLTFSAG------ESTTTVSPFVPGGVSDGQWHTVQLKYYNKPLLGQTGLPQGPSEQKVAVVTVDGCDTGVALRFGSVLGNYSCAAQGTQGGSKKSLDLTGPLLLGGVPDLPESFPVRMRQFVGCMRNLQVDSRHIDMADFIANNGTVPGCPAKKNVCDSNTC--HNGGTCVNQWDAFSCECPLGFGGKSCAQEMANPQHFLGSSLVAWHGLSLPIS--QPWYLSLMFRTRQADGVLLQAITRGRSTITLQLREGHVMLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHAILSFDYGQQRAEGNLGPRLHGLHLSNITVGGIPGPAGGVARG-FRGCLQGVRVSDTPEGVNSLDPSHGESINVEQGCSLPDPCDSNPCPANSYCSNDWDSYSCSCD-PGYYGDNCTNVCDLNPCEHQSVCTRKPSAPHGYTCECPPNYLGPYCETRIDQPCPRGWWGHPTCGPCNCDVSKGFDPDCN--------KTSGECHCKENHYRPPGSPTCLLCDCYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPFAEVTTNGC-EVNYDSCPRAIEAGIWWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPPNLFNCTSITFSELKGFAERL----QRNESGLDSGRSQQLALLLR--NATQHTAGYFGSDVKVAYQLATRLLAHESTQRGFGLSATQDVHFTENLLRVGSALLDTANKRHWELIQQTEGGTAWLLQHYEAYASALAQNM---------RHTYLSPFTIVTPNIVISVVRLDKGNFAGAKLPRYEALRGEQPPDLETTVILPESVFRETPPVVRPAGPGEAQEPEELARRQRRHPELSQ-GEAVASVIIYRTLAGLLPHNYDPDKRSLRVPKRPIINTPVVSISVHDDEELLPRALDKPVTVQFRLLETEERTKPICVFWNHSILVSGTGGWSARGCEVVFR-NESHVSCQCNHMTSFAVLMDVSRRENGEILPL----KTLTYVALGVTLAALLLTFFFLTLLRILRSNQHGIRRNLTAALGLAQLVFLLGINQADLPFA-CTVIAILLHFLYLCTFSWALLEALHLYRALTEVRDVNTGPMRFYYMLGWGVPAFITGLAVGLDPEGYGNPDFCWLSI-YDTLIWSFAGPVAFAVSMSVFLYILAARASC-AAQRQGFEKKGPVS----GLQPSFAVLLLLSATWLLALLSVNSDTLLFHYLFATCNCIQGPFIFLSYVVLSKEVRKALKLACSR 2626 The following BLAST results are available for this feature:
BLAST of TCONS_00002990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.